Carc022294.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072076.1:11396584-11405260[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00067 0.05 14.9 0.6 1 23 269 291 269 291 0.98 2 15 0.87 64 5.1 0.1 3 23 316 337 314 337 0.94 3 15 0.0049 0.37 12.2 0.5 2 23 359 380 358 380 0.95 4 15 0.0039 0.29 12.5 1.3 1 23 384 407 384 407 0.97 5 15 0.00092 0.068 14.5 0.1 1 23 414 437 414 437 0.97 6 15 0.00083 0.062 14.6 3.1 1 23 472 495 472 495 0.95 7 15 0.0077 0.57 11.6 0.2 1 23 501 523 501 523 0.96 8 15 0.048 3.6 9.1 0.5 1 18 529 546 529 546 0.91 9 15 0.0077 0.57 11.6 0.2 1 23 563 585 563 585 0.96 10 15 0.011 0.85 11.0 1.4 1 21 591 611 591 612 0.96 11 15 0.00083 0.062 14.6 3.1 1 23 614 637 614 637 0.95 12 15 0.0077 0.57 11.6 0.2 1 23 643 665 643 665 0.96 13 15 0.0093 0.69 11.3 1.9 1 22 671 692 671 692 0.96 14 15 0.003 0.22 12.9 0.2 1 23 709 731 709 731 0.97 15 15 0.0012 0.086 14.2 2.8 1 23 737 759 737 759 0.99
Sequence Information
- Coding Sequence
- ATGGCCAATGTGATGGAGAATAAAATTAAAGGGCCCATTATCAACCCTGGACTGTGCCGTTGCTGCCATTCGATAAAGAAATGCCGTCTCCTCACTTCAGAGTATGACTTCAATGGCACCAAGGAGGTGTATTCAGATATGTTTATGGACATTTTTGGCCTTATTTTCCCGCACCTGGATGGAGACAGCATGGACTGCTGCATCTGCGCCACGTGCGTCGCGCGGCTGCGGGAGGCCGGTGCGTTCCGGCGGCAGGTGCTGCAGTCCCAGCAGCTGTTCCTGGAGTCCAGGCTTAAGGAAAGTGAAAAGAATGCGGTGGAGGTTAAAATAGAGCCGTGCGACGCCGACCTTCAACATGATGCTGATGGTGATGATGCTGACCGAAATGACGATTATCATGAAGATGATACAAACATGGATGAATCAGCAGGCGCAGATGTCACAAGTAAGAAAGATAAGTCATTAAAGAGAAGTAGGACCGATCAAAGAGAGACCACCGCTGAGAAGATTAAGAAAATGCGACAGAAAATGGAAGAGTTGCTGCGTGAAAGCAAAGattCTAATACAAACAAAGAGGATACAAAAACAAAGAACACAACAGCAGAGAAGATTTTGATCATGCGCAAGAATGCGGAGAAGTTATTACAGGATGAGAAGTCCCACACAAAGACGCCAAGCGACCCGTGCATGGACGAGCCCCGCACGGACGAGCCCCGCATGGACGAGCCCCGCATGGCGCGCGCGAACCTCGCGGTGATCGTGGGCTGCTCGTACGTGTGCCCGTTCCTCAACCGCATCAGCTTCTACTACTGCTTCTACTGCAAGGACCAGTTCACGGACCCCGCGGAGCTGCGCGCTCATACGCTGACGCACGACCCGCGGCTGTTCGAGACCACGCTGGAGCCCCACATCAAGgtaccGAGCGTCGACATAACCCGCATCGACTGCAGGCTGTGCTCAGAGAAAATCGACGACATCGACGCCTTCAAGAGGCACATCACTACCGAGCACAAGAAGCTTTTATATCCCGTCACTAACGAGTTTTTAAAGTTCAAACTGACGCTAAACTCTCTCACCTGTACGGAATGCAACGGGAGCTTCCAATTCTTCGACGCGTTAAAGAAGCATATGATTGACCACTTCGGCACCCACACATGCGACGAATGCGGCGACCGATTCATAGAAATAACCCAACTACGTTCGCACATACGGAAAAAACATAAAAAGGTAGACGCGAATTACCCTTGTGAGATCTGTGGGAAGAACCTCAAGTCAAAATACAGTATGGGGCTACATATAGCTACAGTTCACGAGAAGAGACCGACGGTGAATTGCTACAAATGCGACTCTTCGTTCTTATCTCACGCGTTGAGAAACCGCCATTTGATCGAGGTGCACGGTGACAAACGGACGTTCCCTTGTAAATTGTGTGATAAAGTGTACAACAGGCGGAAAACGTTGATAGAGCACAACCGGCACAAGCACCTGAAGGTGTACAACCACCAGTGCGAGCTGTGCGCGCAGCAGTTCTACCTGCCTTCGGCGCTGCAGGAGCACATGGCGGGACACACCGGGGAGCGGAACTTCAAATGCGATCAGTGCGACAAGAGCTACCCGGGCCTCAAGTCTCTGCAGCGGAAAACGTTGATAGAGCACAACTGGCACAAGCACCTGAAGGTGTACAACCACCAGTGCGAGCTGTGCGCGCAGCAGTTCTACCTGCCTTCGGCGCTGCAGGAGCACATGGCGGGACACACCGGGGAGCGGAACTTCAAATGCGATCAGTGCGACAAGAGCTACCCGGGCCTCAAGTCTCTACAGTGCCACATGCGGGATACGTTCCCTTGTAAATTGTGTGATAAAGTGTACAATAGACGCAAAACGTTGATAGAGCACAACCGGCACAAGCACTTGAAGGTGTACAACCACCAGTGCGAGCTGTGCGCGCAGCAGTTCTACCTGCCTTCGGCGCTGCAGGAGCACATGGCGGGACACACCGGGGAGCGGAACTTCAAATGCGATCAGTGCGACAAGAGCTACCCGGGTCTCAAGTCTCTGCAGTGCCACATGCGGCGGAAAACGTTGATAGAGCACAACCGGCACAAGCACCTGAAGGTGTACAACCACCAGTGCGAGCTGTGCGCGCAGCAGTTCTACCTGCCTTCGGCGCTGCAGGAGCACATGGCGGTGCACACCGGGGAGCGGAACTTCAAATGCGATCAGTGCGACAAGAGCTACCCGGGTCTCAAGTCTCTGCAGTGCCACATGCGGTCGCACAAACGATAG
- Protein Sequence
- MANVMENKIKGPIINPGLCRCCHSIKKCRLLTSEYDFNGTKEVYSDMFMDIFGLIFPHLDGDSMDCCICATCVARLREAGAFRRQVLQSQQLFLESRLKESEKNAVEVKIEPCDADLQHDADGDDADRNDDYHEDDTNMDESAGADVTSKKDKSLKRSRTDQRETTAEKIKKMRQKMEELLRESKDSNTNKEDTKTKNTTAEKILIMRKNAEKLLQDEKSHTKTPSDPCMDEPRTDEPRMDEPRMARANLAVIVGCSYVCPFLNRISFYYCFYCKDQFTDPAELRAHTLTHDPRLFETTLEPHIKVPSVDITRIDCRLCSEKIDDIDAFKRHITTEHKKLLYPVTNEFLKFKLTLNSLTCTECNGSFQFFDALKKHMIDHFGTHTCDECGDRFIEITQLRSHIRKKHKKVDANYPCEICGKNLKSKYSMGLHIATVHEKRPTVNCYKCDSSFLSHALRNRHLIEVHGDKRTFPCKLCDKVYNRRKTLIEHNRHKHLKVYNHQCELCAQQFYLPSALQEHMAGHTGERNFKCDQCDKSYPGLKSLQRKTLIEHNWHKHLKVYNHQCELCAQQFYLPSALQEHMAGHTGERNFKCDQCDKSYPGLKSLQCHMRDTFPCKLCDKVYNRRKTLIEHNRHKHLKVYNHQCELCAQQFYLPSALQEHMAGHTGERNFKCDQCDKSYPGLKSLQCHMRRKTLIEHNRHKHLKVYNHQCELCAQQFYLPSALQEHMAVHTGERNFKCDQCDKSYPGLKSLQCHMRSHKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00354494;
- 90% Identity
- iTF_00354494;
- 80% Identity
- -