Carc025337.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072081.1:2713629-2734835[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.12 8.8 7.8 1.1 2 23 258 280 257 280 0.95 2 18 0.0016 0.12 13.8 1.1 1 23 288 310 288 310 0.98 3 18 0.0022 0.16 13.3 0.6 2 23 344 367 344 367 0.94 4 18 0.012 0.89 11.0 0.8 2 21 372 391 372 392 0.91 5 18 0.0078 0.58 11.6 2.1 2 23 409 432 409 432 0.88 6 18 0.012 0.89 11.0 0.8 2 21 437 456 437 457 0.91 7 18 0.013 0.95 10.9 0.9 2 21 474 493 474 494 0.91 8 18 0.0078 0.58 11.6 2.1 2 23 522 545 522 545 0.88 9 18 0.0078 0.58 11.6 2.1 2 23 550 573 550 573 0.88 10 18 0.013 0.98 10.8 2.1 2 21 578 597 578 598 0.93 11 18 0.0085 0.63 11.5 1.0 2 21 615 634 615 635 0.92 12 18 0.00029 0.021 16.1 0.6 2 23 650 671 649 671 0.94 13 18 5.8e-05 0.0043 18.3 0.2 1 23 676 698 676 698 0.98 14 18 0.00024 0.018 16.3 5.6 1 21 707 727 707 732 0.94 15 18 0.009 0.67 11.4 2.1 1 23 740 763 740 763 0.91 16 18 0.0028 0.21 13.0 0.3 1 23 769 792 769 792 0.96 17 18 0.031 2.3 9.7 0.4 3 19 806 822 804 823 0.89 18 18 0.021 1.5 10.2 0.6 1 23 836 859 836 859 0.97
Sequence Information
- Coding Sequence
- atggGCGAAATAAACATTAATATAGAAGGATATAATGTAAACGGAATATGCGTGGGATGTCTAAATTATAACAGGAAAATGTTTTACACGGAAGAAACGAAGCAGTGCTTTAAATATTTAGCGAACATCGATGTCCCCGATGGCCTATCAATCCAGGTGTGCTGGGAATGTCTGGCCAGTGTGCGAAGAACCATGAAGTTTAGACAGCAAATATTGAACTCTTATGAGATTCTCATCGCATATTCCAAAAAGCAATCATTCCTGAACTCGCCCACAGATCTATCTAGTCACGCGATACAGCGCCTGTCTGTGACCAAGTTCGAGATGTTCTCTGAACTGCCCGCAAAGGTGGAAGTGCCAATGGAGGAAATTAAGTGTGAAGTGGAAAAGACTGAGAGTGTTGATGAAGCGATCAAACTTCAAACTGTCCTGCAAGAAGCAGAAAACTTAACAGAGATCGAAATTAAGGAAGAATTAGATGACACACAATCCGATTTAATGCACTACAGTCTAGAAGACTCCCAGGACATCGCGCAGAGCTCAGAAGATGACCTAGCGCTGTCCCAGCTGAAGAAAGAAgacaaaaagaagaagagaGGCAGGAAAAAGAAGGAGAAAGTCAAACGGAAAGAAGAAAAGGCCAAATTAAACAGCAGAAAGTTGAAGAACCTTCCGGAGCACCTGGTGAAGCTGTACAAAATGGATGAACAGGAGATGTGGAGCGTCAGAGAGAAGGACGCTGCGAGCGAAGCGTTCCTTAGACTGAAGAATAAGTGCACAACCTGTCTCATTGGGTTCAACACAAGCAAGCAGATGGATACGCATATGAACGGGAAACACACTCCGAAATCTGAAAACGATTACCAGTGCGAGATTTGCAAAGCGTACTTCATTACTAAAGACAATATCAAGATGCACAAGAAACTGCACCTCATGGCCTACAGATGTCGCGAATGCAACTTGGTCACGACGGTGAAGAAAATCATGTTGGCTCACGAGTGCGCAAAATATGCTATCGAAGCTAACAATGTGTGTCCGGACTGTCCTAACAAGACTTTCAGCACCAAATCCAAACTGCTGTACCACAGAAGCGTAACGCACCAAGAGAAGCCGCAGTGCGACTGCTGCGGGAAAGTGTTCGCCAACAAGATGACGCTCAAATACCATCTCAACGCCGAGGCAGCACTGCTTCGCCACAGAAGCGTGACGCACCAAGAGAAGCCGCAGTGCGACTGCTGCGGGAAAGTGTTCGCCAACAAGATGACGCTCAAATACCATCTCAAAAGCGTGACACACCAAGAGAAGCCGCAGTGTGACTGCTGCGGGAAAGTGTTCGCCAACAAGATGACGCTCAAATACCATCTCAACGCCGAGGCAGCACTGCTTCGCCACAGAAGCGTGACGCACCAAGAGAAGCCGCAGTGCGACTGCTGCGGGAAAGTGTTCGCCAACAAGATGACGCTCAAATACCATCTCAATGAGTGTGCTATACGGTTCAATATCGCTTGTGGCGCCGAAGCAGCACTGCTTCACCACAGAAGCGTGACGCACCAAGAGAAGCCGCAGTGCGACTGCTGCGGGAAAGTGTTCGCCAACAAGATGACGCTCAAATACCATCTCAAAAGCGTGACGCACCAAGAGAAGCCGCAGTGCGACTGCTGCGGGAAAGTGTTCGCCAACAAGATGACGCTCAAATACCATCTCAAAAGCGTGACGCACCAAGAGAAGCCGCAGTGCCACTGCTGCGGGAAAGTGTTCGCCAACAAGATGACGCTCAAATACCATCTCAACGCCGAGGCAGCACTGCTTCACCACAGAAGCGTGACGCACCAAGAGAAGCCGCAGTGCGACTGCTGCGGGAAAGTGTTCGCCAACAAGATGACGCTCAAATACCATCTCAAGATCTTGCCTCAAAACAAGGATGAGCCAAAAGAGAAGCTCGTCATCCCTTGCAAGGGTTGCGACAAAGTGTTCCATTCTAAGAAGAGCTATAGAGCGCATGTAGTCATCCACGACGGGCTCTCGTACCCTTGCCCGGTGTGCGGCAAGCTGTTCCAGTGGAAGCGGAACCTCGCGCGACACATGCGGAACCACCGCGAGAAGGAAGAGGGCGCCACGCACCAGTGCCGCGAGTGTGGCAAGACCTTCTCCAGCCGGGACTGCTACAACAACCACATGAAGCTGAGCAAGCGGCACGCGCACGAGAGctcctacatCCACGCGTGCCAGTTCTGCGGGAAGAAGTTCGCGACGCGCTGGTGCATGAACGACCACATCGACTGGGAACACCTCAAGATCATCAAGTACCAGTGCTCCATATGCTTCAAGCCATTTAAGACAGCGAAAATTATGGTGGCGCACATGAACAACATACACGAGGGCAAAAACAAGAGGGAGCCGGACGGAGAGCACCTGTGCGAGATATGCGGGAAATCGTACAAGACTGTGAAGCGACTGAAGGGTCACGTGTGGGCGATGCACACGAACCGCTCCGAGGCGAAGAGCTTCAAGTGCCCGCTGTGCCCCGCCACCTTCAGCTGGCAGACGTCCACctacaagcacatcaagatgatgCACTACACCAAACGACTCAAGCAGCCGCGAGTGACTGCCAAGAAGCCAGAAGCCTACCCGGGAATCGAACTGGCGAACCGCATGCAGTACTTCCAGCAGAGCATCGCCAACAACGCAGGgaacgcgccgccgccgctaaTAGATATCGTGCACGCttga
- Protein Sequence
- MGEININIEGYNVNGICVGCLNYNRKMFYTEETKQCFKYLANIDVPDGLSIQVCWECLASVRRTMKFRQQILNSYEILIAYSKKQSFLNSPTDLSSHAIQRLSVTKFEMFSELPAKVEVPMEEIKCEVEKTESVDEAIKLQTVLQEAENLTEIEIKEELDDTQSDLMHYSLEDSQDIAQSSEDDLALSQLKKEDKKKKRGRKKKEKVKRKEEKAKLNSRKLKNLPEHLVKLYKMDEQEMWSVREKDAASEAFLRLKNKCTTCLIGFNTSKQMDTHMNGKHTPKSENDYQCEICKAYFITKDNIKMHKKLHLMAYRCRECNLVTTVKKIMLAHECAKYAIEANNVCPDCPNKTFSTKSKLLYHRSVTHQEKPQCDCCGKVFANKMTLKYHLNAEAALLRHRSVTHQEKPQCDCCGKVFANKMTLKYHLKSVTHQEKPQCDCCGKVFANKMTLKYHLNAEAALLRHRSVTHQEKPQCDCCGKVFANKMTLKYHLNECAIRFNIACGAEAALLHHRSVTHQEKPQCDCCGKVFANKMTLKYHLKSVTHQEKPQCDCCGKVFANKMTLKYHLKSVTHQEKPQCHCCGKVFANKMTLKYHLNAEAALLHHRSVTHQEKPQCDCCGKVFANKMTLKYHLKILPQNKDEPKEKLVIPCKGCDKVFHSKKSYRAHVVIHDGLSYPCPVCGKLFQWKRNLARHMRNHREKEEGATHQCRECGKTFSSRDCYNNHMKLSKRHAHESSYIHACQFCGKKFATRWCMNDHIDWEHLKIIKYQCSICFKPFKTAKIMVAHMNNIHEGKNKREPDGEHLCEICGKSYKTVKRLKGHVWAMHTNRSEAKSFKCPLCPATFSWQTSTYKHIKMMHYTKRLKQPRVTAKKPEAYPGIELANRMQYFQQSIANNAGNAPPPLIDIVHA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -