Carc018724.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- PRDM5
- Assembly
- GCA_036785405.1
- Location
- CM072073.1:6050374-6055785[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.94 70 5.0 0.2 3 21 26 44 25 45 0.93 2 19 0.0015 0.11 13.8 6.3 1 23 67 90 67 90 0.97 3 19 2.9 2.2e+02 3.5 0.1 2 23 98 120 97 120 0.90 4 19 8.9e-05 0.0066 17.7 0.9 1 20 125 144 125 146 0.94 5 19 9.2e-07 6.8e-05 23.9 0.2 1 23 157 180 157 180 0.96 6 19 0.011 0.84 11.1 5.3 1 23 186 209 186 209 0.97 7 19 0.0016 0.12 13.8 0.2 2 23 216 237 215 237 0.96 8 19 0.045 3.3 9.2 0.1 1 23 242 264 242 264 0.97 9 19 0.25 19 6.8 0.2 1 16 270 285 270 287 0.84 10 19 2.3 1.7e+02 3.8 0.1 3 23 291 312 289 312 0.91 11 19 0.25 19 6.8 0.2 1 16 318 333 318 335 0.84 12 19 2.3 1.7e+02 3.8 0.1 3 23 339 360 337 360 0.91 13 19 0.25 19 6.8 0.2 1 16 366 381 366 383 0.84 14 19 2.3 1.7e+02 3.8 0.1 3 23 387 408 385 408 0.91 15 19 5.4e-07 4e-05 24.7 1.4 1 23 414 436 414 436 0.98 16 19 0.024 1.8 10.1 1.5 1 23 439 461 439 461 0.95 17 19 7.1 5.2e+02 2.3 0.5 8 23 480 495 469 495 0.78 18 19 1.4e-06 0.0001 23.4 0.7 1 23 499 521 499 521 0.98 19 19 1.2 90 4.7 0.7 3 23 529 552 528 552 0.83
Sequence Information
- Coding Sequence
- ATGCCCCCTAAAAGAAGATTAGGGCGGCCCCCGGGCactaaaaacaaaaagaaaattaagacTGAAAATGAACACTGTGAATTTTGTAAGGTGTCTTACGATTCTGCCGAGGCCTATGAAGAGCATTTGCAATTTTGCAAGAAATCACTATTGCAGAATGCATTAGTGGTGAATAGTGACGGTAATCAGGATAAGGTCTACAGCTGCAAACAGTGCAATAAAAAGTTTAAACTGCAGCATAGCTATAAGAGCCATCTCAAAAATGAGCATTCAAAGGCTCCAGGCAGTGTCAGTTGTAAACAATGTTATGTTGTCTGCCCAAACGTCGATGTGTTGGCCAAACATGTGGAGCTAATCCACCAGAGGGAGATATTCGAGTGTGAGGACTGCGGCACAAAGTTTGTCAGACGCTCTCATGTCTCGAGGCACAAGTTGCAGAAAGGATGCGATGGGAGCAACGTCAACTCGTTTCCATGTGAGATTTGTGATGCCAGATTCACAAGGAAAGATAACCTGATGGTGCACCTGCGGCTGCAGCACATCAACAAGAACAACTACATCTGCAAGCATTGTGATTACCACACAAGGAACTTCTCCAAGTTGATTATTCATACACAGAGGTTGCACATAGAGAACTACCAACTGGAATGCGACCACTGCGGAAAGATTACTGGCTCTCGTGCAGCTATGACTAAGCATTTGGAGATTCACGGTGAAAAGAAATATGCATGTGATGTGTGCGGCTACAACACGTACACCGTCGAGGTGATGAGACGCCACGTCCTGACACACGTTCCCGACAAGCCGCACAAGTGCCCGCTGTGCCCGCGCTCCTACATTTACCATGCCCTATTCACTAACATGCTTGTTTGTGTTGACCAGTGCGGCTACAACACGTACACCGTCGAGGTGATGAGACGCCACGTCCTGACACACGTTCCCGACAAGCCGCACAAGTGCCCGCTGTGCCCGCGCTCCTACATTTACCATGCCCTATTCACTAACATGCTTGTTTGTGTTGACCAGTGCGGCTACAACACGTACACCGTCGAGGTGATGAGACGCCACGTCCTGACACACGTTCCCGACAAGCCGCACAAGTGCCCGCTTTGCCCGCGCTCCTACATTTACCATGCCCTATTCACTAACATGCTTGTTTGTGTTGACCAGTGCGGCTACAACACGTACACCGTCGAGGTGATGCGGCGTCATGTCCTGACGCACGTGCCCGACAAGCCGCACAAGTGCCCGCTGTGCCCGCGCTCCTACATCCAGAAGGTGCAGCTGCAGCGCCACATGTTGACGCACTCGGGGCACTGCTGCGTCGTCTGCGGGGACTCCTTCAAGACTGAGGCCAAATTGCTAGTTCACGAACGTGAACACAGCACGGGTGATAAATTGTTGGCCTGTCCGTTTGAAAAGTGCCCATACAATAAAAAGGAGATGAAGAACAAGAAATGCCTCGAAACACACATAAAAGAGCACTATTCACCCTACGAGTGCGAGGTCTGCAAGAAGCGGTTCACCAACGAGGCGAACATGCGGCGGCACCTGGCGACGCACGCGCTGGAGAAGCCGCGGCGCTGCATGTACTGCGTGAACGCGCGCGCGTACGTGCGCGGCGAGCACCTCATCCGCCACGTGCGCAAGTCGCACCCGCAGGTGTTCcgcgagcgcctgcagcacgTGCGCCGCGTCTTGGTGAGCAGCATTCACACCTCGCTTCAAGAAGCGGTTCCAACGAGGCGAACATGCGGCGGCACCTGGCGACGCACGCGCTGGAGAAGCCGCGGCGCTGCATGTACTGCGTGA
- Protein Sequence
- MPPKRRLGRPPGTKNKKKIKTENEHCEFCKVSYDSAEAYEEHLQFCKKSLLQNALVVNSDGNQDKVYSCKQCNKKFKLQHSYKSHLKNEHSKAPGSVSCKQCYVVCPNVDVLAKHVELIHQREIFECEDCGTKFVRRSHVSRHKLQKGCDGSNVNSFPCEICDARFTRKDNLMVHLRLQHINKNNYICKHCDYHTRNFSKLIIHTQRLHIENYQLECDHCGKITGSRAAMTKHLEIHGEKKYACDVCGYNTYTVEVMRRHVLTHVPDKPHKCPLCPRSYIYHALFTNMLVCVDQCGYNTYTVEVMRRHVLTHVPDKPHKCPLCPRSYIYHALFTNMLVCVDQCGYNTYTVEVMRRHVLTHVPDKPHKCPLCPRSYIYHALFTNMLVCVDQCGYNTYTVEVMRRHVLTHVPDKPHKCPLCPRSYIQKVQLQRHMLTHSGHCCVVCGDSFKTEAKLLVHEREHSTGDKLLACPFEKCPYNKKEMKNKKCLETHIKEHYSPYECEVCKKRFTNEANMRRHLATHALEKPRRCMYCVNARAYVRGEHLIRHVRKSHPQVFRERLQHVRRVLVSSIHTSLQEAVPTRRTCGGTWRRTRWRSRGAACTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -