Carc022199.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072076.1:10941510-10954179[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.095 7.1 8.1 2.0 1 23 237 259 237 259 0.96 2 16 0.0013 0.098 14.0 0.1 3 23 289 310 287 310 0.94 3 16 0.015 1.1 10.7 0.4 2 23 331 353 330 353 0.95 4 16 0.00022 0.016 16.5 2.1 2 23 359 381 358 381 0.95 5 16 0.037 2.7 9.4 0.3 1 23 386 409 386 409 0.94 6 16 1.8 1.3e+02 4.2 0.1 2 23 412 434 411 434 0.95 7 16 0.0023 0.17 13.3 1.2 2 22 441 461 440 461 0.95 8 16 0.0086 0.64 11.4 0.8 1 23 519 542 519 542 0.96 9 16 0.23 17 6.9 0.1 3 23 571 592 569 592 0.92 10 16 0.047 3.5 9.1 0.1 3 23 616 638 614 638 0.95 11 16 0.00069 0.051 14.9 0.6 3 20 645 662 643 666 0.90 12 16 0.074 5.5 8.5 1.0 1 23 671 694 671 694 0.97 13 16 0.00047 0.035 15.4 0.2 2 23 700 722 700 722 0.94 14 16 5.1e-05 0.0038 18.4 4.7 1 23 726 749 726 749 0.97 15 16 6.5e-05 0.0048 18.1 0.4 2 23 756 777 755 777 0.96 16 16 0.0054 0.4 12.1 2.5 1 23 783 805 783 805 0.97
Sequence Information
- Coding Sequence
- ATGGAGTTCCACGAGATAGTGGTAAAAGACACCCCGGGACTGTGCCGGTGCTGTCTTTCCGAGGGGTGTTACAAAGATCTGAGCACCGAATACACTTGGATGGATGAGCAAGAAATTTACGCTGATATGTTATTGGAATGCTTTGATATTAGTATATCCCAACACATGGAGGGCCCCAATGGTCCGAACCGGCTGATCTGCGAGGTGTGCATCACCCGGCTGCGGGACGCGTGCAACTTTAAGAAGCAAGTCCTGGACTCAGAGAAGAAGTTTGTGGACATGGTCGGGAGAGGGGCATTTAAGAGGATGGAAGCACAAGCATACTCGGAGCCGATGAAGTCAGAAGGCGGTGTGGAGCTGCATCCGCTGGAGGAGACGGAGATAGAGTACCTGGAAGATGACGTCATTGACTATGACATGGATGGAAACAAAGAAGAATCCGAGCCAACTGTCTCCGAAGACGTACTGGTCTCTACTTTACCCATCAAGGCTAAACGGGGACGTCCCAAAAAGACCGTAGTCAAACCCGAGAAGAAGAAAACTGAGAAGAAAAAACTCAAAATGGAGGACAAACCTAAAACCAAGACTGCAAAAGATGTTAAACCTCGGAAACGTAACGGCTGCGAATCGTCCTCGATGCGTAGACGGAGGAATCTGCAGTTGTTGTTCAACAACACGGCGATTATACCGTTTAAATGGCGCGGGAAATACCTGTGTTTCTATTGCAGCAAAGATATCACAGAGTATAACGAGCTAAAGAAGCATACGAAATCCCACGGCAATTGCTCGACTATGGATCACTCTCTAAAGGTCCTGAAAGGTGGACAGAACATGGAAATCAAGATCGATATATCCGAAATCGCTTGCGAGATTTGTAGCGAAGAATTTTCAAACTTAGATGACCTCCTCAACCATTTATTCCGCAAACATAATTTAGAGTACGACAGAAATGTCGAAATGGCATTAGAAGAGTATAAATTAGTGGATCTCAGTTGTTTGGTGTGCAATCAAAAGTTTAGTTACTTCGGCTACTTAGTGTCTCACGTCAATAGTAACCATCCTAAAAACTGCCTCATCTGCGATAAATGCGACCAAAAGTTCAACAAAAAGAGAGACCTGTTCTCCCATATGAAAAACTATCACAGGGAAGGAGGTTACGTATGCGATGCGTGCCCCCAAAGTTTTAGTTCCCTCAACATACTCAGAAAACACAGGATCAACAGACACATGACGAGATGCAGCGTTTGTTATTTACGACTACCCTCAGCTGTGTTAAAACAAAAGCATATGGAGATAGAGCATCCAGACGATGGTTCCTTGCAATGCGATATATGCTACAAGGAATTTCATACGAAACAAGGCCTCAAAATGCATTTACGCAAATGTAAAGGAGACATCTTCGAAATAAAAGGCGTGAAGAAAGAAGAATACGACATGGATCTGGACACAAACTACGAAAGCACAAAAAGACCTAGCGTTAAACAAATCAGAGAAAACATCGTCACCGTCATAAACATGTCTACAGCCGTACCGTTTAATTTCTACAAAAACAAATTCAACTGTTTCTATTGCTCCCAAGATTTCCCCGACTCGGATTCAATGAGAGAACACACTTTGATGCAGCATCCCATATGTGATGTTAAGGAAAAATGCATCAGAAAATGCCGAGAGTCCGTCGCATGCGTCAAAATTGATATTTCCTCGCTAGCTTGCAAGATTTGCTTCGAATCTATGAGCGATTTGGAGAATCTACTAGATCATTTGATATTAAAACACCAGGCGAATTATGATAAATCGATCACCACGTGCCTGCAGCCTTATAGATTAATCAAAGATAACATGGCATGCCCGATTTGTCCCAACGAAGTTTTTCGATTCTTCGGAACTTTACTCAAGCATATGAACAACGAAcacacaaataataatataatatgcgtGTATTGCGGTCAAACGTTTAGACGGGATCAGAATTTAAGGGTGCATATTTGGAGGCATCATAGAGACGGGAGGTTTAAATGCTCCATATGCAATGCTGAATGCAATATACCATCCAGGTTGTATATGCATATGGCGAAATCCCACGGAGTCAAAGCTGCTAAATGCCCGAAGTGTCCCGAAAGTTTTGCGACGCAGTATTTGCGTCAGAAACATTTAATCGAAGCCCACGATTCCGGTCACAAATGCAGCTATTGCGGCAAACTGTTTACAAGGAACTCCTTCATGAGGGATCACATACGACGGACGCATTTGAAGGAGAAAAATGTTGAATGTTCGATATGTGGTATGAAGTTCTTCAACAATATTCTCTTGCGTCGTCACATGGTGAAACATAGTGGGGAGAAGAACTTTCACTGTGATTTGTGCGGGGAGAGATTCTACTGGAGGAAGAGTCTTCGCACACATATGGCCAGACATAACAAACAGATTAGTCCGATGTGA
- Protein Sequence
- MEFHEIVVKDTPGLCRCCLSEGCYKDLSTEYTWMDEQEIYADMLLECFDISISQHMEGPNGPNRLICEVCITRLRDACNFKKQVLDSEKKFVDMVGRGAFKRMEAQAYSEPMKSEGGVELHPLEETEIEYLEDDVIDYDMDGNKEESEPTVSEDVLVSTLPIKAKRGRPKKTVVKPEKKKTEKKKLKMEDKPKTKTAKDVKPRKRNGCESSSMRRRRNLQLLFNNTAIIPFKWRGKYLCFYCSKDITEYNELKKHTKSHGNCSTMDHSLKVLKGGQNMEIKIDISEIACEICSEEFSNLDDLLNHLFRKHNLEYDRNVEMALEEYKLVDLSCLVCNQKFSYFGYLVSHVNSNHPKNCLICDKCDQKFNKKRDLFSHMKNYHREGGYVCDACPQSFSSLNILRKHRINRHMTRCSVCYLRLPSAVLKQKHMEIEHPDDGSLQCDICYKEFHTKQGLKMHLRKCKGDIFEIKGVKKEEYDMDLDTNYESTKRPSVKQIRENIVTVINMSTAVPFNFYKNKFNCFYCSQDFPDSDSMREHTLMQHPICDVKEKCIRKCRESVACVKIDISSLACKICFESMSDLENLLDHLILKHQANYDKSITTCLQPYRLIKDNMACPICPNEVFRFFGTLLKHMNNEHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCSICNAECNIPSRLYMHMAKSHGVKAAKCPKCPESFATQYLRQKHLIEAHDSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSICGMKFFNNILLRRHMVKHSGEKNFHCDLCGERFYWRKSLRTHMARHNKQISPM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00354399;
- 90% Identity
- iTF_00354399;
- 80% Identity
- -