Carc022281.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072076.1:11321691-11326629[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.088 6.5 8.3 2.5 3 23 28 49 27 49 0.91 2 30 0.3 22 6.6 0.1 2 23 76 98 75 98 0.95 3 30 0.0011 0.079 14.3 0.9 3 23 123 143 121 143 0.95 4 30 0.81 60 5.2 2.0 1 23 147 170 147 170 0.95 5 30 6.8 5e+02 2.3 0.2 2 22 175 195 175 195 0.91 6 30 2 1.5e+02 4.0 1.1 1 23 202 225 202 225 0.88 7 30 0.0037 0.28 12.6 1.0 1 23 232 255 232 255 0.88 8 30 3.1 2.3e+02 3.4 5.7 2 23 261 282 260 282 0.94 9 30 1.8e-05 0.0013 19.9 1.2 1 20 288 307 288 310 0.94 10 30 0.0011 0.085 14.2 0.3 1 23 316 339 316 339 0.96 11 30 0.016 1.2 10.6 0.4 3 23 382 403 381 403 0.94 12 30 0.97 72 5.0 0.3 2 23 430 452 429 452 0.94 13 30 0.17 12 7.4 0.7 3 23 477 497 475 497 0.95 14 30 0.067 5 8.6 1.9 1 21 501 521 501 524 0.95 15 30 2.2 1.6e+02 3.9 0.3 3 22 530 549 529 549 0.92 16 30 0.58 43 5.7 1.6 1 23 556 579 556 579 0.91 17 30 0.81 60 5.2 2.0 1 23 586 609 586 609 0.84 18 30 0.084 6.2 8.3 3.4 1 23 614 636 614 636 0.95 19 30 0.2 15 7.1 0.7 3 23 689 710 688 710 0.94 20 30 0.53 39 5.8 0.1 2 23 735 757 734 757 0.95 21 30 0.0008 0.059 14.7 0.4 2 23 781 802 780 802 0.96 22 30 0.00016 0.012 16.9 0.5 1 21 806 826 806 827 0.96 23 30 0.11 8.1 8.0 0.2 1 23 868 891 868 891 0.95 24 30 0.54 40 5.8 0.4 2 23 917 939 916 939 0.95 25 30 0.0081 0.6 11.5 0.6 2 23 963 984 962 984 0.95 26 30 0.0002 0.015 16.6 0.0 1 23 988 1011 988 1011 0.98 27 30 0.038 2.8 9.4 0.5 1 23 1015 1038 1015 1038 0.97 28 30 6.1 4.5e+02 2.5 0.3 1 23 1043 1068 1043 1068 0.89 29 30 0.00043 0.032 15.5 2.7 1 23 1077 1100 1077 1100 0.97 30 30 0.0035 0.26 12.7 1.5 1 23 1110 1133 1110 1133 0.95
Sequence Information
- Coding Sequence
- ATGGCGAAACAAAACGCGGAACTGTTGTTGGCATACTCGACCTTGTATCCGTTTCGAATACTGCGCACCAAAGATATACTCTGCGTCTACTGTCGCGAAGAATTCACTGACCCCAATCATTTCCGTAACCATGTGGACGAGTGCCACAAAACGGTGACTGTTACAACCGCGTTCGCGCACTGCTCGAGTGGGAAAGAATCTTTAAAAGTAGACCTAACTAACCTTAAATGCAGGATATGTTCCGCATCGTGTGAAAACTTGGAAGAGATTGCCGCGCACATTCGCGACGCACACGCGATTTCGCAGATCAATACGAATTTCGATCTCGGCTTGCATCCGTACCGTTTGAATAACGAGAAATGGATTTGCGCCGTATGCGACAAGAAATTCGCTTCGCTAATACAACTGTGCAGGCACACCACCTCCCACTATCACAAATATTCTTGCGGCATCTGTAATCGCACGTATCTAACTGCTCAGGCGTTGAAATGCCACACACGGTCTAGTCATTCAGGTGGGAATGTGTGCAGGAAGTGTTGGACCGATTTCCCGACGCTGGAAATGAAGAGGGAGCATGTTAAAACGTCTAAATCCTGCTGGCCGTTCTGTTGCACTGCATGCGGTGAGCGGTTCGTGTCTGGGGAAAAGAGACAGACGCATCTCACCGAGGTACATGGAGAGGAGAGAAAGCAGTACGAGTGTCCTGACTGTGATCTGACTTTCAAATCTCGACGGCCCTTCTACAACCACTTCACGCTAGTCCACAGCGACAACAGCGTCAAGTGCCCGTGTTGCCATCTCAAATTCACTTCCCAAAAACAAATGGAGGAACACAAGTTCAGTCACACCGGAAACAAGCCGTTCCGTTGCGATATATGCTCGAAAACCTTTTCGAGAAGGAAAAATTTGTATCAGCACATATGGATCCACAGCGCCAATAAGCGTTTCGTTTGCGTCGCTTGTAATAAGCAGTTCGCTCAGAAAGTTAGCCTTACTGGCCACTTGAGGTCGCAACACCCAGAGAATACGTCAAATGcCACGGAACCTGTCAGTAGCATACAGAAGGCGAAACAAAACGCAGAATTAGTCTTGCAATACTCGACCGTGTATCCCTTCAGAATACGTCGCGGCAAAGATTTGCTCTGCGTCTACTGCCATGAGGAGTATTCGGATCCGAACGACTATCGGAGCCATATGGACGAGTACCACAAATCGTTCACAGTATCCACCGCGTTCGCGCACTGTGCTAAAAGGAAGGATTACTTAAAGGTCGACCTCACGAACCTCAAATGTAGAATATGCTTCACGCCATGCGATAGTTTGAAAGAGATCGCCGCACACATTCGCGATGTTCACGGAATGTCTCAAATCAATACGGATTTCGACATCGGTATGCATCCATACCGTTTGAATGGCGAGAAATGGATCTGCGCTCTTTGCGATAGCAAATTCGCCTCGCTCATAAAACTTTGTCGACACACGGCCTCCCACTATCAGAAATACACTTGTGATGTGTGCGGGCGCATGTATTTGACCAATGAGGCGTTGAAGTACCACACTCGTTGCAGTCACTCCGGAAGTAATTCGTGCAGGAAGTGTTGGACTGAATTCCCGACGCTGGAAATGAAGAAGGAGCATATTAAAATGTCTAAATCCTGCTGGCCGTTCTGTTGTACGGCGTGCGGGGAACGTTTCTTTTCATGGGAAAAGAAACAAGAGCATCTCACGGAAGTGCACGGACGAGAGAAAAGGGCGTATGCTTGTCCGGACTGCGAGCAAGTGTTCAGTTGTCGGAAACCGTTCTACAAACATTACACTTTAGTTCACAGCGACAACTGCTACAAATGTCCGTGTTGCGATCTCAAATTCAGTACCAAGAACCAAATGGAGGACCACAGATTCGGCCACACGGggtcCACATTGGAAATTCGTGGGCGTAGGGAGAATGACACTGAGAGAAAGAAAATCGTTCTCGTATATCAGACGCCGCAGCGGCGTAACGCGGAACTAATACTCAGACATTCCACCGCCTACCCGTTTAAGACGCGATTTAGTCAGATACTGTGCGCGTTTTGCCACGACGAATACGCTACCCTGTCCAGTTTGCGGTATCACATGCGAGCGGACCACGTCGACACGGACTTTAAAAACGTTTTCTATAGAGCGAAGGATAATCTAATAAAAGTGGACATAACTGATTTGAAATGTAATATATGTCAGCAAGATATAAGGGATGTCGATACTTTGATGGGTCATTTGTCTAGAGAGCACAATAAGCCCGTTAGGTTCAACGCGCGGTTTGGTGTTCTGCCTTACAAGCAAGACGCTGTCGAGTGCTGGGTTTGCGTGTACTGTCAAAAGACGTTTGTTGAGTTCATCCAGTTCAAGCGCCACATAGCTACGCATTTTATGAACTTCAGTTGCGATAAGTGCGGCACGACTTTTATTTCGGAGCACGCGTTAAGGGATCACTTGCGACAAGTGAAGTGCTTTAGGACTGCGTACAAACCGCGGAACGGGAGGGTGTTGAAGCCGCGAACCAACGCCGAGATCATTCTCCAGTGCTCCACGGCTTGTCCGTTCAGAACGTGGAAGAGCAACTTCAGTTGCGTGTTCTGTAGGGTTCAGTCTAGCGATCCGAGCACTCTTCGAGCGCATGTGGTTACTAGACACGAGAATTATGACGTGCAAGCTGCCTTCTATAAAAAGTTAGGCAAAGAGTTCCTCAAGATCGATATAACGGATCTGCAGTGCAAACTGTGCTTCATGCCGATTGAGAATTTCGAAAATTTAACGTACCATTTGAAGAACGATCACCAACAGCCGATTAACTCGGATGCCCAGCTGGGTGTACTCCCTTTCAGACTGAACGACGGATCGATATGGAAATGCACGATGTGCCCCAACGAGTTTAAGGATTTCGTCTCCCTAAATAAGCACACCTCGGAGCATTTCCAGAATTACGTTTGCGATACTTGCGGCGAAGGTTTCATTACGGAGTCTGCTATGATCGCCCACACGAGGGTGCCCCACGAAAACAAGTATAATTGCAGTCGATGCGTTGCGACGTTCTCGACTCTCGACGAGCGGAATGTGCACGTTAAAACACAACATACTTCCACACCCTACATGTGCGTGTACTGTAAGGACAAGCCGCGATTCGCGAATTGGGAGTTGAGGAAGAAACATCTGATGGAAGTCCACAACTATAAGACTGGAGCCGACAAATACGAGTGCACGACCTGTCAGAAGTCCTTCAAAACTCGCTCGGGGAAGTACAATCACATGGCAAGGACTCACAGGCTGAAGAAGGATACGGAGTTAAATTATCCTTGCCATAGTTGCCCGAAAGCGTTCACCACGCAACTGTTCTTGGATAAGCATGTTGCGAAAAAACACTTCGACGTCTAA
- Protein Sequence
- MAKQNAELLLAYSTLYPFRILRTKDILCVYCREEFTDPNHFRNHVDECHKTVTVTTAFAHCSSGKESLKVDLTNLKCRICSASCENLEEIAAHIRDAHAISQINTNFDLGLHPYRLNNEKWICAVCDKKFASLIQLCRHTTSHYHKYSCGICNRTYLTAQALKCHTRSSHSGGNVCRKCWTDFPTLEMKREHVKTSKSCWPFCCTACGERFVSGEKRQTHLTEVHGEERKQYECPDCDLTFKSRRPFYNHFTLVHSDNSVKCPCCHLKFTSQKQMEEHKFSHTGNKPFRCDICSKTFSRRKNLYQHIWIHSANKRFVCVACNKQFAQKVSLTGHLRSQHPENTSNATEPVSSIQKAKQNAELVLQYSTVYPFRIRRGKDLLCVYCHEEYSDPNDYRSHMDEYHKSFTVSTAFAHCAKRKDYLKVDLTNLKCRICFTPCDSLKEIAAHIRDVHGMSQINTDFDIGMHPYRLNGEKWICALCDSKFASLIKLCRHTASHYQKYTCDVCGRMYLTNEALKYHTRCSHSGSNSCRKCWTEFPTLEMKKEHIKMSKSCWPFCCTACGERFFSWEKKQEHLTEVHGREKRAYACPDCEQVFSCRKPFYKHYTLVHSDNCYKCPCCDLKFSTKNQMEDHRFGHTGSTLEIRGRRENDTERKKIVLVYQTPQRRNAELILRHSTAYPFKTRFSQILCAFCHDEYATLSSLRYHMRADHVDTDFKNVFYRAKDNLIKVDITDLKCNICQQDIRDVDTLMGHLSREHNKPVRFNARFGVLPYKQDAVECWVCVYCQKTFVEFIQFKRHIATHFMNFSCDKCGTTFISEHALRDHLRQVKCFRTAYKPRNGRVLKPRTNAEIILQCSTACPFRTWKSNFSCVFCRVQSSDPSTLRAHVVTRHENYDVQAAFYKKLGKEFLKIDITDLQCKLCFMPIENFENLTYHLKNDHQQPINSDAQLGVLPFRLNDGSIWKCTMCPNEFKDFVSLNKHTSEHFQNYVCDTCGEGFITESAMIAHTRVPHENKYNCSRCVATFSTLDERNVHVKTQHTSTPYMCVYCKDKPRFANWELRKKHLMEVHNYKTGADKYECTTCQKSFKTRSGKYNHMARTHRLKKDTELNYPCHSCPKAFTTQLFLDKHVAKKHFDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -