Carc008606.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072062.1:13300002-13304739[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.6e-05 0.0012 20.0 0.7 1 23 164 187 164 187 0.94 2 10 0.0019 0.14 13.5 3.4 2 23 193 214 192 214 0.97 3 10 1.4e-08 1.1e-06 29.6 1.9 1 23 220 242 220 242 0.99 4 10 0.00043 0.032 15.5 0.2 1 20 248 267 248 269 0.96 5 10 6.9e-05 0.0051 18.0 0.9 2 23 281 302 280 302 0.97 6 10 4.3e-05 0.0032 18.7 4.3 1 23 308 330 308 330 0.97 7 10 0.00024 0.018 16.3 3.4 1 23 336 358 336 358 0.98 8 10 4.3e-06 0.00032 21.8 5.0 1 23 364 386 364 386 0.97 9 10 3.2e-05 0.0024 19.1 0.6 2 23 393 414 392 414 0.97 10 10 0.00018 0.014 16.7 4.6 1 23 420 443 420 443 0.97
Sequence Information
- Coding Sequence
- ATGGAGGCGGAAATAGGGTGTGTTACGATTAAAATAGAACCCGATATTATGTTATCCACTGAATCCGAAAACAATATTGGTTTTTCTGATAATAATGGAACACAAAATCGTGGAAATGATAACAGCAAACCAGTAGAAGAACCTGCCCCTGCATTTGAACCCGTATTTGTAAGGGTAAAGAAAGAACCCGAGTTCTGTGATGACACTATTAAAACAGAGCCCTCATCTTCAAATAGGCTCCTGGGGAGCTGGCATGACGTTCCAATCAAATATGAACCTGTGTGGAATGGTGATGGAAACGAGAAACAAAAGATAAATGTAGAAGTTTCTATAAAAACTGAACCAGCTGATACTGAACCTGCAATCGAACACCAAAACTGTGATTATATTATACCAGACTCAGTTCCAGAAGTCCAGAGACCTTTTAATCTGTATGTAAACAATGTTCCTGACTCAATTTTTAGTTTAAACTCTGCAGATGCAAGCAAGCACACTTGCCCTGTATGCCACAAAGCATTTGCAAATAAAGGGAACGTAAGCAGACACTTGATAGAGGCACACACGCAAGCACAACTAGAGTGCAATGTGTGCTTTCGAAAATTCAACAAAAAGGGACATTACGATAAACATCTCCTCACCCATAACGCAGAGAAACGTTTTAAATGCGAAGAGTGTGGCAAAAAGTTTCGTACCTCATCGAATTTGGAGCAACACAAGCGCATACATCTACTGGTGAAACCGTTCCAATGTCAGCAGTGCACGCGACAGTTTGCCGTCAAAGCCAACCTCGCCAAACACCAGGGCTCGGGCAGGTGTAAAGTCCCAAACCCGGATCCGATAGTTTGCACCGTATGCAACAAGGTCTTCCAGAAAGAGTTCCTGCTCAAAAGTCATTTACGTAGACACACCACGGAGCGTCCCTTCGAATGCGACAAGTGCAAAATGTGTTTCAAATACAAATCGACGTTGATACGACACGTTCAACTACACAGTAACATTAAACCTTACTCCTGTAATATATGCAAAAAGAAATTCACCCACTCGGGGCTCATTAAACCTCACATGAGAAAACACACCGGTGAGAAGCCTTATACGTGTCCTATATGCAACAAAACTTTCGCACACAAACATAACATGCAGAGGCATACGGTGAGACATGCGAAGCAAAAAAATTTGGTTTGCGAAGTGTGCAATAAGAAATTTCCAAAAGAAAGTCGGTTGATATACCACATGAAGACCCATACTAAAGCTAAGCCTTTCAAATGTGGAGTTTGCACCAAAACTTTCTCACATAAACAGAATATAATCAGGCATTACAGCAGAAAGCATCCGAACGATACGTACAGCTGTAAAGACACAGATGCGAGTGTTGCCAAAGATGTGTGGGAGAATGTAGTGTTAAAGAAGAATATGCAAGTCAAAGTAGAAGTCAAGGAAGTTGTCAGCAGTGACGATGAACCATTATTGCGTATTCAAAAAGAGGCTGAGGAGATTataggaaaataa
- Protein Sequence
- MEAEIGCVTIKIEPDIMLSTESENNIGFSDNNGTQNRGNDNSKPVEEPAPAFEPVFVRVKKEPEFCDDTIKTEPSSSNRLLGSWHDVPIKYEPVWNGDGNEKQKINVEVSIKTEPADTEPAIEHQNCDYIIPDSVPEVQRPFNLYVNNVPDSIFSLNSADASKHTCPVCHKAFANKGNVSRHLIEAHTQAQLECNVCFRKFNKKGHYDKHLLTHNAEKRFKCEECGKKFRTSSNLEQHKRIHLLVKPFQCQQCTRQFAVKANLAKHQGSGRCKVPNPDPIVCTVCNKVFQKEFLLKSHLRRHTTERPFECDKCKMCFKYKSTLIRHVQLHSNIKPYSCNICKKKFTHSGLIKPHMRKHTGEKPYTCPICNKTFAHKHNMQRHTVRHAKQKNLVCEVCNKKFPKESRLIYHMKTHTKAKPFKCGVCTKTFSHKQNIIRHYSRKHPNDTYSCKDTDASVAKDVWENVVLKKNMQVKVEVKEVVSSDDEPLLRIQKEAEEIIGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00354381;
- 90% Identity
- iTF_00354381;
- 80% Identity
- -