Carc022301.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072076.1:11471468-11477382[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 5.1 3.8e+02 2.7 0.5 3 23 58 79 56 79 0.90 2 22 2.9 2.1e+02 3.5 0.1 2 23 105 126 104 126 0.94 3 22 0.011 0.83 11.1 2.4 2 23 149 170 148 170 0.97 4 22 0.079 5.9 8.4 0.3 1 23 174 196 174 196 0.97 5 22 0.21 15 7.1 3.0 1 21 201 221 201 224 0.85 6 22 8.2e-05 0.0061 17.8 3.1 1 23 230 253 230 253 0.98 7 22 0.0043 0.32 12.4 2.2 2 23 261 283 260 283 0.97 8 22 0.008 0.59 11.5 3.0 1 23 289 311 289 311 0.98 9 22 3.6e-07 2.7e-05 25.2 0.5 1 23 317 339 317 339 0.98 10 22 0.08 5.9 8.4 2.2 3 23 390 411 388 411 0.95 11 22 1.6 1.2e+02 4.3 0.1 2 23 436 458 435 458 0.92 12 22 0.18 13 7.3 6.0 1 23 480 502 480 502 0.98 13 22 0.055 4.1 8.9 1.1 2 23 507 528 506 528 0.95 14 22 0.06 4.4 8.8 0.4 1 22 533 554 533 556 0.86 15 22 0.0011 0.079 14.3 4.4 2 23 564 586 563 586 0.96 16 22 0.011 0.84 11.1 1.0 1 23 593 616 593 616 0.96 17 22 0.11 8.1 8.0 2.1 1 23 622 644 622 644 0.97 18 22 2.8e-06 0.00021 22.4 1.8 1 23 650 672 650 672 0.99 19 22 0.00066 0.049 14.9 6.5 1 23 678 701 678 701 0.98 20 22 0.15 11 7.5 0.5 3 23 726 746 725 746 0.98 21 22 2.8e-06 0.00021 22.4 1.8 1 23 752 774 752 774 0.99 22 22 0.00038 0.028 15.7 5.6 1 23 780 803 780 803 0.97
Sequence Information
- Coding Sequence
- ATGTCTCCTTTCTTTGTAGGGCCGGGAGACGTGTTAAAAGGCCCTGCAAAACCTACAAACATAAAACGCCTCAGCTTGGATGGAAGGATCAAACATCTGGACAACATCACAACACTTTTCAAGTACACGAACGCGACGCCGATTCGCTGCGAGAAAGACTCGAGATATGGATGTTGTTTTTGCGCAGAGCTTTTCGGAGATCCGGCGGAACTCAAGCAGCACAACATAAAAACACATCAATCCGTCATGGACTCCATCATGAGAGGGAAAAGACTTTACGATTACCTTGTGAAACTGGATATAACCGGATTAACATGCAACCTCTGCACAATAGATCTGGATAACCTGGACGCAATGATGCTGCACCTAAAAGGCCACAAGAAGCCAATGCATATGGACATCAACAACCACATAGTCCCGTTCAGTTTTGACACAGACGATCTGAAGTGCGCGATCTGCAAAACCGGGTTCAACTCGTTCCGGCAATTGTACCTGCATATGCACTCGCATTACAGAAATCATGTTTGTGATGTGTGCGCAGCCGGTTTCGTGAACGAGAAATCATTCGATGTTCACTACCAGACGCATCAAAAAGGCGTGTTTCACTGCAAATACTGCCAGAAGGAATTCGATACGCTTAGCAGGAAGAGGTCTCACGAATCCGGAGTGCATACGAACTCCCAAAGGTTCAGATGCAGTTACTGCAGCGAGAAATTCAGCAACTCCAGCAAGAAAGAGAAGCATATACGTAAAGTTCACAACGTTAGAGCGAGAGAGGTGAAGTGTAAATTGTGCGAGCGAGTGTGTTCGAGTATGGAGTCTCTACGGGTGCATACGAAAAGAGATCACTTGATGGAGAGGAATTACGAGTGTAAATTCTGCAACAATAAGTACTTCCGTCTCAACGAGCTGAAGAAGCACACGGCTACGCACACGGGCGTGAGGGAGTACCCGTGTGAAGTGTGCCACAAGTCGTTCGCCCGGAAGACCGCTCTGGTGGAGCATATGCGTGTGCACGCAGACGCTAGAACGTTGAAGGCGAGAGATCCCTTGACCGCAAACAGGGGTACCAACATCGAAAGGAACAAGCACATCGACAACATTACTACACTCTACCATCACACCAACGCCACACCTATTCGCGCCCAAAAAGACATCGGCTATGGATGTTGCTTCTGCGAAAAGTTCTGCGCGACACCCGCCGAGCTGAAGATCCATACCAAGTTGGCTCATAGGTCTGAAAAACCGCAGATGAGACACAGGTCTGTCAAAAACTACCACGTCAAACTCGACATAAGCGACCTACAGTGCAATGAATGCAACGCCAGAATAGACAAACTAGAAGACATGATGCTCCATCTCAAGGAAACGCATAAAGAAGTCATCCATTTAGACATAAACAACCAAATAATGCCTTTCAAATTTGACGGTGGAGAATTTAAATGCGTGTTCTGTGGAACTGAGTTCCACAAATTCAAGAAACTAGCCGAACACATGCACAGGCATTACAGAAACTGCGTATGTGAGGTCTGCGGCGCGGGTTTCATTAATGACAAATCGTTCCACGCGCATTTCCAAGTTCACCAGACCGGCGTGTTCCCTTGCAAGTTTTGCGAGAAAGTTTTTAACACAATCGCAAAGAAGAAGGCGCACGAATCGGCCGTGCATATACACTCGCAGTTATTAAACAAATGCGGGTACTGCGACAAAAAGTTCAAGACCCACAGGAGTAAGCAGAAGCATATGGCGAGCGAACACGGCGTGGCGTCTGAGAGATATCTATGTAAACAGTGTGAGAAGGTGTGTTTGACCGCCAACGCCTTGCGAGTCCACATCCGTCGGGATCATTTGAAGGAGCGACCGCACGTGTGTCAGTTGTGCGATTTTTCGTCGTACAAGCGAATCGGTCTGTATAACCACATGTTAAAGCACACTGGGGTCAAGAATTTCCAGTGCGACGTCTGCCAGAAGTTCTACGCGCGGAAGAAGACTCTGAGAGAGCACATGCGTATCCACGAAAATGACCGGCGGTTCAGGTGCGGGCATTGCGACTGCGCCTTCGTGCAGAACTGCAGCCTGAAAGCGCACTTGCGGTCGAAGCATGGGGACATTCCCTTAGTTTTCAACACAACCGCAAAGAAGGCGCGGGACCATTTGAAGGAGCGGCCGCACGGGTGTCAGTTGTGCGATTTTTCGTCATACAAGCGAGTGGGTCTGTACAACCACATGTTAAAGCATACTGGGGTCAAGAATTTCCAGTGCGACGTCTGCCAGAAGTTCTACGCGCGGAAGAAGACTCTGAGAGAGCACATGCGTATCCATGAAGACGACCGGCGGTTCATGTGCGGGCATTGCGGCTGCGCCTTTGTGCAGAACTGCAGCCTTAAGGCGCACTTGCGGTCGAAGCACGGGGACATGCCCTTAATTTAA
- Protein Sequence
- MSPFFVGPGDVLKGPAKPTNIKRLSLDGRIKHLDNITTLFKYTNATPIRCEKDSRYGCCFCAELFGDPAELKQHNIKTHQSVMDSIMRGKRLYDYLVKLDITGLTCNLCTIDLDNLDAMMLHLKGHKKPMHMDINNHIVPFSFDTDDLKCAICKTGFNSFRQLYLHMHSHYRNHVCDVCAAGFVNEKSFDVHYQTHQKGVFHCKYCQKEFDTLSRKRSHESGVHTNSQRFRCSYCSEKFSNSSKKEKHIRKVHNVRAREVKCKLCERVCSSMESLRVHTKRDHLMERNYECKFCNNKYFRLNELKKHTATHTGVREYPCEVCHKSFARKTALVEHMRVHADARTLKARDPLTANRGTNIERNKHIDNITTLYHHTNATPIRAQKDIGYGCCFCEKFCATPAELKIHTKLAHRSEKPQMRHRSVKNYHVKLDISDLQCNECNARIDKLEDMMLHLKETHKEVIHLDINNQIMPFKFDGGEFKCVFCGTEFHKFKKLAEHMHRHYRNCVCEVCGAGFINDKSFHAHFQVHQTGVFPCKFCEKVFNTIAKKKAHESAVHIHSQLLNKCGYCDKKFKTHRSKQKHMASEHGVASERYLCKQCEKVCLTANALRVHIRRDHLKERPHVCQLCDFSSYKRIGLYNHMLKHTGVKNFQCDVCQKFYARKKTLREHMRIHENDRRFRCGHCDCAFVQNCSLKAHLRSKHGDIPLVFNTTAKKARDHLKERPHGCQLCDFSSYKRVGLYNHMLKHTGVKNFQCDVCQKFYARKKTLREHMRIHEDDRRFMCGHCGCAFVQNCSLKAHLRSKHGDMPLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -