Carc002406.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coenonympha arcania
Gene Symbol
-
Assembly
GCA_036785405.1
Location
CM072057.1:2897899-2907967[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 9e-06 0.00067 20.8 1.0 2 23 192 213 191 213 0.98
2 28 0.0041 0.31 12.4 0.3 2 20 267 285 266 287 0.93
3 28 3.1e-05 0.0023 19.1 0.3 3 23 320 341 318 341 0.96
4 28 0.00069 0.051 14.9 0.5 1 23 392 414 392 414 0.98
5 28 0.18 13 7.3 0.2 1 23 443 465 443 465 0.95
6 28 0.0012 0.091 14.1 1.9 2 23 513 534 512 534 0.95
7 28 0.00015 0.011 16.9 2.3 2 23 571 593 571 593 0.97
8 28 2.3e-05 0.0017 19.5 1.0 1 23 643 666 643 666 0.97
9 28 0.00031 0.023 16.0 0.2 1 23 719 741 719 741 0.97
10 28 0.029 2.1 9.8 5.4 2 23 753 774 752 774 0.96
11 28 0.011 0.85 11.0 0.8 2 23 786 807 785 807 0.96
12 28 0.013 0.98 10.8 0.7 1 23 817 839 817 839 0.97
13 28 2.7 2e+02 3.6 6.0 1 23 868 890 868 890 0.89
14 28 0.0017 0.13 13.6 2.3 1 23 901 923 901 923 0.98
15 28 0.00015 0.011 16.9 1.5 1 23 931 953 931 953 0.98
16 28 0.0031 0.23 12.8 0.1 2 23 973 995 972 995 0.97
17 28 1.3 95 4.6 0.9 1 23 1013 1035 1013 1035 0.91
18 28 0.14 10 7.6 3.7 1 23 1042 1064 1042 1064 0.97
19 28 0.066 4.9 8.7 0.5 2 23 1075 1099 1074 1099 0.93
20 28 0.0024 0.18 13.2 0.2 2 23 1122 1143 1121 1143 0.95
21 28 0.25 19 6.8 0.3 2 20 1147 1165 1146 1166 0.93
22 28 0.0032 0.24 12.8 0.2 2 23 1224 1245 1223 1245 0.95
23 28 2.3 1.7e+02 3.8 4.2 5 23 1255 1273 1252 1273 0.94
24 28 0.022 1.6 10.2 0.7 2 23 1284 1306 1283 1306 0.95
25 28 2.5 1.9e+02 3.7 5.5 2 23 1323 1341 1323 1341 0.92
26 28 1.6 1.2e+02 4.3 1.3 2 20 1345 1363 1345 1365 0.90
27 28 0.3 22 6.6 0.4 2 23 1414 1435 1413 1435 0.93
28 28 0.0049 0.36 12.2 0.6 2 23 1446 1468 1445 1468 0.95

Sequence Information

Coding Sequence
ATGGCACTCAAGCTTGGAAAATGTAGGCTTTGCCTCAAACTGGGCGACTTCTATTCCATCTTCACAGTTGATAACAACATGCAGTTGGCCGAAATGGTCATGGAATGTGCGCGAGTGAAAATATACGATGGCGATGGACTCCCGGATAAAATTTGCAGCGAGTGTATACAGAAGCTGAGCAGCGCCCACATCTTCAAGCAGCAGTGTGAACGCTCTGACCAAGAGCTGCGTCGTAACTATGTTCCTccaccagGTTTCAGTCCAACTCCACCGCCAAACAGACAGAGCAGCGACTCTGCCTTCTCATCCCACACGGAAACTTCCAAGCCGTCCTCTTCCACTGAGAGTCAAGTCACTCCCGTCAGTCGAACTAGGAAGAGGAGTAGGGACAGTATCGAGGAGGCTTCCACCAGCAGTTACTCCAATTACAAACCAGGGAGTTCCAAAAGAGTTGATGAGCTGCGCATGTCCCAAAAAAAACCAAGGATTTCCCAAACGTCCGACTCTGACTATGAAGACAACAGTGCTTCATTCTACTCCGGTGAAACAGATTCAGATGAACCCTTGCAAAACAAATGCAGTCAGTGCCCCAAATCATTCAGATCAGCGAAAAGTTTGGCCATGCACATGAGACTGCACAAAAGGCAATCCAACTCCCAAACCTCTCAGAATCAAAACGAGCAAACACAGAGCGCCAACACCGAAAAGGGCAAGAAAGAAAATGCAACCCCCGAGGCGAGCAAGAAAAGAAGTGCAGACGAAGAAATGAGGGACgcaaacgacgacgacgacaaatTGAACTGCGATAAATGCGGGAAGCAGTTCAAACTGAACATAATGCTGAAGAGGCATTACGATATATGCTTCAAGTCGCCGCAGAAAGAGCTCCTAGTGTCATTGGAACCCATAGACGCTTTGATTCAACTCCCGAATCAATCGGGAACGGGGAAAATAGATTGCGAAATGTGCTCTACGAAATTCAAAACGATAGATAACTTAGAGAAGCATATGAGAATAGTTCACGCGGCGGTTTTGAAAAAGGAACGGTTTTCAGTAAGCAATGAAAACGGAGTAGATTGCGTTCCTTGCGTCTTTTGCAATCAGCCCTTCGAAGATTACTATGTCCACAGTGCTCACTTGTCGTCGTGCCCTGAAAAGACTGATGCGGCAACCTTCGAATGCACCGTTTGCAAGAAGGTTTACGCTAAAAAAGCGTCCTACATACTACATGTTAAGATGCATTTTTTTCAAATAGCTTTTCCAAAAGATACGCCTGAAAAGCCTTCGAGTAAACCTACCGCTAGTAACGGGCGCGATAAGGAAAGTCATCAATGTCGCATGTGCACCGCAAAACTGCCGACGCAAGAGGCATTGATCAATCACTTGGCGGCACATATGAACAAGGTCGAGGACGAGGATGTTCCCGACGATGGCGCCTTCGATGATGGCGCTGATGTCGCCGATGACGAGTCGagAGCAAGTTCCGGCGGAGACTCATCAGACTTTACGTCCTCTCGCGTAACGAGCGGACCACTCAAATGTAGGTACTGCGACAAGGAATTCAAGTACAAGAAAGCTCTGTCCTCGCACGAAGACAGACACATCAGCGGCGAAATTAAGATCGAGAAGACCGAGAAAAAAAACCACTCCTACCGGTCGGACAACGAGTCTGATATGGAGTCGAGTGAAGACGAGGGCGGGGGAGACAACACTTGCGACATATGCGAGAAGCAGTTCTCGTACAAACGCCTCCTCATCAAGCACAAGAGGACGAAACATTGCATGACGGCGGGCACGAAGCGAGCGAAGATCAACCTCAAAGACTGCTCCGTCCGCTGTTTGATCTGCGACATCGAGATGAAAGTGAGCGCGATCAACGAACACAACCAGACGCACATCGCGGCGAACATGAAGCCGCGCAACCTGTACACCTGCAAGGAGTGCGGCGAACAGTTTAAGAGTTGTAGTGGGCTCGCGAACCACATCAAGCTGGTGCACCGCCTGCACCAGCCGTCGACCAAGAAGATTATTGTGCCATCGGCGGACGTGGCGGATTTTTGTGAGGTCGTTGTGACAAAGGCGGAACCCCTGGACGATGTTCAGAGTCACAACGGCTATGAGGTTTCCGTCGACGCGACCGTCAGCATGAGCGGCTTCACGTGCCCCGTGTGCAGCAAGACGCTGCCCACGCTCGTGTCGCTCAAGAGACATGTCAACTGGCACAAGAACGTGGGGAACAACATGGAGAAGAAGCTCGAGTGCTTCGTCTGCAAAGAGATATTCAGGTTCCAGTGCCACTACAAGATCCACATGCGGCAGCACTACAACGACACCAACATCGACCCTCAGCTGCTCACGTGCCCCACCTGCGGCCGCAAGAGCAAGCACCTGCGCGCCGCGAAAGCGCACATGAACTGGCACAAGCAGACGCGCTTCAAGAACAAGGACTACGAGTGCTCCATCTGCAAGCGCGTGTTCCAGTTCCGCAAGGTGTACCTCTCGCATATGGCCATCCACTTCAAGCGCGGCGAGAGCGCGTCCACCGCCGTCGTCGGCAGCGTGGAGCCGCTCAGCCTCGACCGCAGCAAGCTGGACGGCGCGCACGTGTGCCACCTGTGCGGCAAGGTGTGCGACTCGGAGAACTCGCTCAAGTGCCACGTGACTTGGCACAACTCCAAGACGCTGCTGTACGGCTCGCGGCACGAGTGCGACATCTGCAACGTGCAGTTCACCAACAAGCGCCGCCTCGAGCTGCACACCCGCTCGCACTTCGAGGACGACAACGGCCCCTTCAAGTGCCACATCTGCGGGAAGGGCTACATCGTCGAAGACTACTACAAGCGGCACTTGAAGGGCCACAACTTCGACCACCAGTCGCACAAGAAGCGCATCGAGAAGCTGCGGAAGGACAAAGTGAAGTGTCCCATCTGCGAGCGATACTACCCGGACCTCGTTCGTCTCATCCGACACTTGCGGCGGACGCACCCCGAGAGCAAAATGATCAAGGAAGACCCCGACGCGCCGCCTCCCATGTACTACTCGTGTAAACTGTGCGCCAAGGTTTTCTTAGACGAGCGAAGATTGCAGCACCATGAGGAAGCTCACCTGAGGAAACCCGAATTCTTTAAGTGCAAATTTTGCGGGAAGAAGACTATCTCGCTCAAAAATCATAGGGTTCACATCAAGGGTCACTTGACCCAGAAATATATCGAGGAGCCTTTGAAGTGTACGATCGAAAACTGTGACGAGACGTTCGGGCGCGGCTACGACCTGCACTACCACTTGCGCGACGCGCACGGCATCAACGAGACGTGGATAGCGGAGCGCGGGCCGCGGACGCCCGACGGGCCTCTCAAGGAGCTGCAGTGCTCCATATGCTACAAGGTGCTGGCCAGCCGCGGCAACTACGAGAGACACATCGACTATCACAACTCTCTCCGGTGCAACTACTGTTTCGAATACTTCACTAGCTCCCGGTTCCTCGAAGGCCATTTGGCGTTCAGCTGCGAGAAGAAAAAATTAATCGGCGACACCGAGATCTACGCGAAGAAAGTGAAGTGCCACATGTGCTACAAAGCTTTCCACTTGCAAGTGAAGCTGGACTGCCACCTGCGCACGCAGCACGACATCACTACTTTCAAAGAAGCCTCCGAGGGCAAGAAGGAGATCGTCTGCGACTACTGCTTTAAGGTGTTCGAAAACGAGTACGCTCTCAGCACCCACAAAATCTACCACCGCACCATCGGCTACTACGGGTGCATCTACTGCAACCGGAAGTTCAACACGATGACGTTGTACCGCAAACACAAGAACCACCACTTCTCCCAGCTCAACGTCGACAACCCCAACAAGTGCGAGCACTGCGACGAGACCTTCGTCGCGTTCAGGGAGATGATATACCACATGCGGGACGTGCACGGCGACGACAAGGAGTGGATCGTGTTGCCCAAGGACGACGTCGAGGAGGAGTGCGGCATCTGCCACAAGACGTTCTTCAACCTGCACAGACATATGGACTACCACGAAGAGAACCGGTGCAAGAAGTGTGGGGAGTACTTCTTCTCGTCGTTAGACTACGATAACCATCTGTGCGCAGTCGACAGCGATGAAGAAGTCACCGAGGCTAACACTAACGGAGTCCGGACTGTGTACGAAGAGTGTGCCTTCTGCTTCAAACCGATCACTAAGATCAGCTCAAAGAAGAAGCACGATATAATCCACAAGGGATCCGGATCAATTTCGTGCCGGTTCTGCCCGCTCAAGTTCAAAACCATTGACGCGTTCAACATCCACGCGTTCTCGCATCGAAGCAGAAAGTATAAGAAGAAGCCGATTAAATGTCGAAAGTGCGGCGAAAAGTTTGTGAAGTATGGTCCGTTTATGAGGCACATGAAGGATGTCCACAAGTCGTCGAAGAAGCTTCACTACAGGGCTACAGTCATGCCGGAAGAGTGCGTGGTCTGCCACGAGAAGTTCCCCAACCTACACAACCACTACCGCGCGCATCTGCAGAACCAGTGTCACCAGTGCTTCAAGTACTTCACGTCGTACAAAGTGTTTTCTATGCACCAGTGCGATAAGGAAGACTCGAATCCGTCTAAAGTTTTCACGTGTGACGCGAACTTGATTGAACTCATTAATACGTATGTTCCTAAAGATGAGAAGGATGATGAAAAGTATTACGGttacgaagaagaagaagaggaagACGAAGAAGTAGATATTGAGACGGTGGATCAGAAGGTGCCCCTTGCTATTAAACCTTTGAATAAAACTGATGTCCCCGATCAGGTATCACAAGATGAAGATAGCCAAAACTCGATAGACATCGACGAGGCAAATGTCCACGAGATGGCCCACGCTCCAATAATATCCGACGTCCTCTCCCTTTTCAAGAAGAAGGAGGAAATGAGAAATTTAGACGATGGCCAGAACAATTCGAATGGTGATGTTGTGGTCCTAACAGACGATGATTCTGTGGGTTTTGAAGATAATATTGTGACCGTTATAACTATAGATGACGATGATTAG
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTVDNNMQLAEMVMECARVKIYDGDGLPDKICSECIQKLSSAHIFKQQCERSDQELRRNYVPPPGFSPTPPPNRQSSDSAFSSHTETSKPSSSTESQVTPVSRTRKRSRDSIEEASTSSYSNYKPGSSKRVDELRMSQKKPRISQTSDSDYEDNSASFYSGETDSDEPLQNKCSQCPKSFRSAKSLAMHMRLHKRQSNSQTSQNQNEQTQSANTEKGKKENATPEASKKRSADEEMRDANDDDDKLNCDKCGKQFKLNIMLKRHYDICFKSPQKELLVSLEPIDALIQLPNQSGTGKIDCEMCSTKFKTIDNLEKHMRIVHAAVLKKERFSVSNENGVDCVPCVFCNQPFEDYYVHSAHLSSCPEKTDAATFECTVCKKVYAKKASYILHVKMHFFQIAFPKDTPEKPSSKPTASNGRDKESHQCRMCTAKLPTQEALINHLAAHMNKVEDEDVPDDGAFDDGADVADDESRASSGGDSSDFTSSRVTSGPLKCRYCDKEFKYKKALSSHEDRHISGEIKIEKTEKKNHSYRSDNESDMESSEDEGGGDNTCDICEKQFSYKRLLIKHKRTKHCMTAGTKRAKINLKDCSVRCLICDIEMKVSAINEHNQTHIAANMKPRNLYTCKECGEQFKSCSGLANHIKLVHRLHQPSTKKIIVPSADVADFCEVVVTKAEPLDDVQSHNGYEVSVDATVSMSGFTCPVCSKTLPTLVSLKRHVNWHKNVGNNMEKKLECFVCKEIFRFQCHYKIHMRQHYNDTNIDPQLLTCPTCGRKSKHLRAAKAHMNWHKQTRFKNKDYECSICKRVFQFRKVYLSHMAIHFKRGESASTAVVGSVEPLSLDRSKLDGAHVCHLCGKVCDSENSLKCHVTWHNSKTLLYGSRHECDICNVQFTNKRRLELHTRSHFEDDNGPFKCHICGKGYIVEDYYKRHLKGHNFDHQSHKKRIEKLRKDKVKCPICERYYPDLVRLIRHLRRTHPESKMIKEDPDAPPPMYYSCKLCAKVFLDERRLQHHEEAHLRKPEFFKCKFCGKKTISLKNHRVHIKGHLTQKYIEEPLKCTIENCDETFGRGYDLHYHLRDAHGINETWIAERGPRTPDGPLKELQCSICYKVLASRGNYERHIDYHNSLRCNYCFEYFTSSRFLEGHLAFSCEKKKLIGDTEIYAKKVKCHMCYKAFHLQVKLDCHLRTQHDITTFKEASEGKKEIVCDYCFKVFENEYALSTHKIYHRTIGYYGCIYCNRKFNTMTLYRKHKNHHFSQLNVDNPNKCEHCDETFVAFREMIYHMRDVHGDDKEWIVLPKDDVEEECGICHKTFFNLHRHMDYHEENRCKKCGEYFFSSLDYDNHLCAVDSDEEVTEANTNGVRTVYEECAFCFKPITKISSKKKHDIIHKGSGSISCRFCPLKFKTIDAFNIHAFSHRSRKYKKKPIKCRKCGEKFVKYGPFMRHMKDVHKSSKKLHYRATVMPEECVVCHEKFPNLHNHYRAHLQNQCHQCFKYFTSYKVFSMHQCDKEDSNPSKVFTCDANLIELINTYVPKDEKDDEKYYGYEEEEEEDEEVDIETVDQKVPLAIKPLNKTDVPDQVSQDEDSQNSIDIDEANVHEMAHAPIISDVLSLFKKKEEMRNLDDGQNNSNGDVVVLTDDDSVGFEDNIVTVITIDDDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01092303;
90% Identity
iTF_00354365;
80% Identity
-