Carc022196.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072076.1:10923234-10926700[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0018 0.13 13.6 1.8 1 23 18 41 18 41 0.95 2 18 0.013 0.98 10.9 0.0 3 23 70 91 68 91 0.96 3 18 0.042 3.1 9.3 0.5 2 23 114 136 113 136 0.95 4 18 0.00031 0.023 16.0 0.1 1 23 141 164 141 164 0.97 5 18 0.0014 0.1 13.9 1.7 1 23 167 190 167 190 0.96 6 18 0.0002 0.015 16.5 0.3 2 23 197 219 196 219 0.94 7 18 0.0025 0.19 13.1 0.4 2 23 227 249 226 249 0.95 8 18 0.049 3.6 9.1 0.6 1 23 254 276 254 276 0.98 9 18 3.8e-07 2.8e-05 25.1 0.3 1 23 282 304 282 304 0.99 10 18 0.0011 0.084 14.2 2.2 1 23 367 389 367 389 0.98 11 18 0.065 4.8 8.7 0.0 2 23 415 437 414 437 0.95 12 18 0.27 20 6.7 0.4 3 23 461 482 459 482 0.93 13 18 0.00051 0.038 15.3 2.2 3 23 490 511 489 511 0.98 14 18 4.9e-05 0.0036 18.5 2.5 3 23 518 539 517 539 0.97 15 18 0.012 0.92 10.9 2.5 1 23 545 568 545 568 0.98 16 18 0.0008 0.059 14.7 2.2 2 23 575 597 574 597 0.95 17 18 0.28 21 6.7 2.0 1 23 603 625 603 625 0.90 18 18 0.015 1.1 10.7 1.0 1 23 631 654 631 654 0.89
Sequence Information
- Coding Sequence
- ATGTTGCTGCATTACGGGAACGTGCTACCGTTTAACTGGAACACACGCGGGTTCAGATGCTTCTATTGCGGCAAGGAAATCAAAGACTGCGACTCACTCAAAGAGCACACGGCTATAACCCATAAAGCGGTGGACTTAGAGGCGTTTATACCTCAAAAGATTATTTCCAAACATGTCCCCGTCAAAATTGACGTGACGCATTTAGCCTGTCGAGTCTGCGACATATCTTTATCCAGCGTAGAAGACTTAATAGCGCATATAATCACTATTCACGATGAAGAATACGATAGTTCAGTCGGCGTATGCGTTTTTCCATTCAGACTGAACAAGAACATGCTGAAATGCGTTTTGTGTGACGAGAAATACGATAACTTCACATCGCTAATGGGACACATGTATAAACAGCACATGGAGCATACGTACGTCTGCCAGATATGCGGAGCGAGTTACATAGACGAAATCCGTTTAAAGCGACACATCAAAAACGCGCATGTCGGTCATAAGTGTAAAATTTGCGGGAAGATCTTCGACGCGGCACACCAAGTTGTCAAGCATAGAGAACGTATTCACGGCATCCAGAAATCCGTGGAATGCAACTTGTGTAGTGCCAATTTCAAGAGCCAATATCAGTTGAAAGTGCATATGGGGAAAATCCATAACGTCGAAAAGTATAGACTCAAATGTGAACTTTGTCCTAAAGTCTGTACAACGAAAGGGGCGATGTTGTTGCATGTACAATCTGTCCATGCGGATGCAAGATTCGAGTGCGACATTTGCGAATACAAAACCGGTATTAAATGGATGTTGAAACTGCATAAACGTAAGCATTTCGGCGAGAAGAATTATACGTGTAGCATTTGTGACGTGAAGTTTGGGAGGTCCAGCAATTTGCGGGCCCATATCAAAGTGCATACGGGGGAAGCTAGAGGTGGCCAGAGAGCTGTCAAAGAAGTAGACTCTGACGATGAACTGGTACTGGCTGCGTTGGCGCCCAGACCCGCCCTGACGCCGAAGGATAAGAGGAAAATCATGAGGAACAACGTCCTGCAAGTGCTCCTGAAGTCTACCGTCATGCCTTTCCGCTGGCTGAAGAGTTCCTACCGCTGTTTCTACTGCTACGAGATATTCCAAGAGCCGTCAGACTTGAAAAATCATCAGCACGTCCACATAGGCGACGAAATCAAAGAGCAAGCGATGAACAACTACTGGGACTCCGTCGTGTACGTCGACATATCGAGTATATCGTGCAAGCTTTGCCCCGAAAACATCACGGATCTGTACGAACTGATAGACCACTTGATATCTCAACACGGAGTGGTTTACAACAAAGACGTCGGCATTTGCATGGTCGCGTTTAAACTGGACAACTTCACGGTGTACTGTCTCGCTTGCGGCGCAAGCTTCTACACGTTTGGACCCTTGCTTCATCATACGAATAAAGACCACAAAGGGACTTCGGCTATCTTGTGCGATGTTTGCGGGCAACACTTTAAACACGCGAATCTTTTGAGGTTACACGTGAAGACAGTTCACGAAAACTTAGGGTTGCTATGCCCGGAGTGCGGCGAGAAATTCGAGACGCGTTCCAAGCTAAAGACCCATCAAAAGCACCAGCATAACATGGGCAAGAAATACAAATGCCTGGTGTGCCCGTTGACTTTCCAGAGCCATTACAAACGGTCCAGGCATATGGCGACGGACCATAAGAATCGGGAGGAGATTAAATGCCTGCATTGCCCCAAGACTTTCGTCTTCCGAAGTATGATGATGACTCACTTGAGGGACACGCATTTGAAGGTCCGGAACCACATCTGTGGAGTCTGCGGCTTCAAGGCTTTCAACAGCAACCGGCTTAAGATGCACATGTACAAACACAGTGGCGAGAAGAACTTCAAGTGTACAGCCTGCGACAAAGCTTTTACTACTAAGAAGATAATGCGCGCTCATTTCGCTCGCATGCACAAAATGGTGCAGCAACCTGTGGTGTCTTACGAACACTCTTATGTCCAACACAATATTTAA
- Protein Sequence
- MLLHYGNVLPFNWNTRGFRCFYCGKEIKDCDSLKEHTAITHKAVDLEAFIPQKIISKHVPVKIDVTHLACRVCDISLSSVEDLIAHIITIHDEEYDSSVGVCVFPFRLNKNMLKCVLCDEKYDNFTSLMGHMYKQHMEHTYVCQICGASYIDEIRLKRHIKNAHVGHKCKICGKIFDAAHQVVKHRERIHGIQKSVECNLCSANFKSQYQLKVHMGKIHNVEKYRLKCELCPKVCTTKGAMLLHVQSVHADARFECDICEYKTGIKWMLKLHKRKHFGEKNYTCSICDVKFGRSSNLRAHIKVHTGEARGGQRAVKEVDSDDELVLAALAPRPALTPKDKRKIMRNNVLQVLLKSTVMPFRWLKSSYRCFYCYEIFQEPSDLKNHQHVHIGDEIKEQAMNNYWDSVVYVDISSISCKLCPENITDLYELIDHLISQHGVVYNKDVGICMVAFKLDNFTVYCLACGASFYTFGPLLHHTNKDHKGTSAILCDVCGQHFKHANLLRLHVKTVHENLGLLCPECGEKFETRSKLKTHQKHQHNMGKKYKCLVCPLTFQSHYKRSRHMATDHKNREEIKCLHCPKTFVFRSMMMTHLRDTHLKVRNHICGVCGFKAFNSNRLKMHMYKHSGEKNFKCTACDKAFTTKKIMRAHFARMHKMVQQPVVSYEHSYVQHNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -