Carc022198.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072076.1:10932156-10939038[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00057 0.042 15.1 9.7 1 23 13 36 13 36 0.97 2 18 0.00039 0.029 15.6 0.2 2 23 43 64 42 64 0.96 3 18 0.015 1.1 10.7 2.2 3 23 112 132 110 132 0.95 4 18 0.31 23 6.5 0.1 3 23 161 182 159 182 0.89 5 18 0.00062 0.046 15.0 1.4 2 23 203 225 202 225 0.95 6 18 3.7e-05 0.0027 18.9 0.5 1 23 230 253 230 253 0.96 7 18 6.8e-05 0.0051 18.0 2.2 1 23 258 280 258 281 0.95 8 18 0.0018 0.14 13.5 0.4 2 23 284 306 284 306 0.94 9 18 0.075 5.6 8.5 3.8 3 22 315 334 314 334 0.96 10 18 0.0083 0.61 11.5 2.0 1 23 384 407 384 407 0.93 11 18 0.49 36 5.9 0.0 2 23 435 457 434 457 0.91 12 18 0.0008 0.06 14.7 0.1 2 23 480 502 479 502 0.96 13 18 1.3e-05 0.00097 20.3 0.1 3 23 509 530 508 530 0.94 14 18 0.4 29 6.2 5.0 2 23 535 557 534 557 0.93 15 18 0.00075 0.055 14.8 4.3 1 23 562 585 562 585 0.97 16 18 1.5e-05 0.0011 20.1 7.0 1 23 589 612 589 612 0.98 17 18 0.00035 0.026 15.8 0.3 2 23 619 640 618 640 0.96 18 18 2.8e-05 0.0021 19.2 0.6 1 23 646 668 646 668 0.97
Sequence Information
- Coding Sequence
- ATGAGGCGGCATCAAATAGATGCACACGGTTTCGGTCACAAATGCCAGTATTGTCACAAACTCTTCACCAGAAACTCGCATATGAAGAACCATGTGAGACGGTTGCACTTGAAAGAGAAGAACGTCGAATGCAACGTTTGCAAGGAGAAATTCTTCGATCGTGCCCTTTTAAATGTCCATATGGTGAAGCATATAGGCGAGAGGAATTACCACTGTGATGTGTGCGATGAAGCCCCGTTCGAGGACTGCACATCTGTGCGGAGACGGAAAAATTTGCAAACTCTGTTCAACCACACCACAATATTGCCTTTCAAGTGGCGCGGGAAGCACCTTTGCTTCTATTGCGGCGCGAGCCTTACCGACTACGTTGAGTTTAGGAAACACACAAAATCCCACGGCCATTGCGACACCACGGATCACTCGCTAAAACTCATCAAAGGCAACCACATAGAGCTCAAAATCGATATATCGGAAATAGCCTGCGAAATCTGTTCCGAACCCTTCAGGAGTTTCAACGAAATTATCGACCATTTGACCGGCAAACACGATTTGGAATACGACAAATCTGTGGATATACCATTTCAGGAGTACAGATTGGCGGACTGCCGGTGTAACTTGTGCGACCAAGAGTTTACGTATTTCGGGAATTTGATCACGCACACGAATATCGCGCACcctaaaaatagttttatatgcGATAACTGTGGCTTGACTTTTAATAAGAAGAGAGACTTGGCTGTGCATTTGAGGAATTATCACAAAGACGGTGGGCACACTTGCGAAGAATGTTCAGAAGTATTCCCAACCAAGATTTTACTAAACAATCATCAGAACAGCCATCATTTTCGCAGATGCAAGCTATGCAATGCAAAGTTCCCGTCTTATACTTTGCTCCAAAAGCATATTTTAGCTGATCATCCAGATGGTAGCAGTGAAAAGCTGTGTACATACTGTTCGAAACAATGCAAAACCGTCCCAAGCTTAAAGCATCACTTGAGAAAATGCAAGATGAAAAACCTCAAGGTCATAGAAGCGTTCCCAGAAGAAACCCTACAGCCTAAAAAGAAGAGAGATATAACTCAAATCAGAAAGAACATTCAATGTATATTGAACATGTCAACAGCGATACCGTTTAGGTTCTTTTCTAGATTCTCCTGCTTTCACTGTTCTAAAAACTTTGTCGAGTTTGACGAATTAAAAACCCACGTCGTATCCGAGCATCCCGTTTGTGATCTTAAAGATAAAAGCATGAAGAAATGCAAAGGTGAAAGGATCACTGTCAAGATAGACGTGGCAAATTTATCTTGCAAAGTGTGTTACGAAACTATAGACAATTTGGAGGATCTAATAGATCATTTGATTGCAAAACACAACGCGTTATACGACAAATCGATAACGGGGTGTTTTGATCCGTTCAAAATTGTCAAAGACAATATCCCTTGTAACATATGCCCGAGCGTGTTCCGATATTTCGGTACGCTCCTCCGCCACATAAATTCCGAGCACAGTAACAATAATAAGATATGCGATTACTGTGGGCGGAGTTTCAAAAATGTTGCCAATCTAAACGTTCATATAACGTACGCTCATACAGGCGCATGCGCTTGCGACGTTTGCGGTGCCAAATACAAGAACCAGTGGTGTCTGGGGCGGCACAAAGCGAAATGCCACAACGTTAAGGACTTTCAATGCTCGAAATGCCCCGAAAAGTTCCAGTCTCAGTACCACAAACAAAAACACATGATTAAGGAGCACGAGATTGGCCACAAATGTACCCATTGCGGGAAAATGTTCACGAGGAACTCTTTCATGAAGGACCACATCCGTCGCACTCATTTGAAGGAGAAAAACGTCCCTTGCTCGGTGTGCAATGAGAAGTTTTTTGATAACTACCTTCTAAGGCTGCATATGGTCAAGCATAAAGGCGAGAGGAACTTCAGTTGCGAGGTTTGCGGGAAGGCGTTCTTAAGGCGAAGTAATTTGAATTCGCATAAAGAAATGCATAGAAAGTACGGGCATGTTTAA
- Protein Sequence
- MRRHQIDAHGFGHKCQYCHKLFTRNSHMKNHVRRLHLKEKNVECNVCKEKFFDRALLNVHMVKHIGERNYHCDVCDEAPFEDCTSVRRRKNLQTLFNHTTILPFKWRGKHLCFYCGASLTDYVEFRKHTKSHGHCDTTDHSLKLIKGNHIELKIDISEIACEICSEPFRSFNEIIDHLTGKHDLEYDKSVDIPFQEYRLADCRCNLCDQEFTYFGNLITHTNIAHPKNSFICDNCGLTFNKKRDLAVHLRNYHKDGGHTCEECSEVFPTKILLNNHQNSHHFRRCKLCNAKFPSYTLLQKHILADHPDGSSEKLCTYCSKQCKTVPSLKHHLRKCKMKNLKVIEAFPEETLQPKKKRDITQIRKNIQCILNMSTAIPFRFFSRFSCFHCSKNFVEFDELKTHVVSEHPVCDLKDKSMKKCKGERITVKIDVANLSCKVCYETIDNLEDLIDHLIAKHNALYDKSITGCFDPFKIVKDNIPCNICPSVFRYFGTLLRHINSEHSNNNKICDYCGRSFKNVANLNVHITYAHTGACACDVCGAKYKNQWCLGRHKAKCHNVKDFQCSKCPEKFQSQYHKQKHMIKEHEIGHKCTHCGKMFTRNSFMKDHIRRTHLKEKNVPCSVCNEKFFDNYLLRLHMVKHKGERNFSCEVCGKAFLRRSNLNSHKEMHRKYGHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00954816;
- 90% Identity
- iTF_00354375;
- 80% Identity
- -