Carc022219.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coenonympha arcania
Gene Symbol
-
Assembly
GCA_036785405.1
Location
CM072076.1:11048551-11053220[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.41 30 6.2 0.3 1 23 78 101 78 101 0.96
2 22 2.7 2e+02 3.6 0.0 2 22 126 146 125 148 0.88
3 22 0.05 3.7 9.0 2.4 2 23 171 192 170 192 0.97
4 22 0.014 1 10.8 0.2 1 23 196 218 196 218 0.97
5 22 0.0079 0.58 11.6 1.3 1 23 223 246 223 246 0.93
6 22 0.1 7.7 8.0 2.4 2 23 254 276 254 276 0.94
7 22 3.3e-05 0.0024 19.0 3.8 1 23 283 306 283 306 0.98
8 22 0.00015 0.011 16.9 6.8 1 23 312 334 312 334 0.98
9 22 3.2e-05 0.0024 19.1 2.7 1 23 340 362 340 362 0.98
10 22 1.4 1e+02 4.5 0.9 1 23 455 478 455 478 0.89
11 22 0.012 0.9 11.0 1.8 2 23 549 570 548 570 0.96
12 22 3e-05 0.0023 19.1 0.3 1 23 574 597 574 597 0.95
13 22 0.00025 0.018 16.3 5.0 1 23 621 644 621 644 0.98
14 22 3e-05 0.0022 19.2 0.8 2 23 651 672 650 672 0.97
15 22 2.2e-07 1.7e-05 25.9 1.9 1 23 678 700 678 700 0.98
16 22 0.04 3 9.3 0.2 2 23 879 900 878 900 0.97
17 22 0.0026 0.19 13.1 0.1 1 23 904 926 904 926 0.98
18 22 0.00059 0.044 15.1 0.6 1 23 931 954 931 954 0.98
19 22 0.86 64 5.1 2.5 1 23 961 984 961 984 0.82
20 22 1.1e-05 0.0008 20.6 1.4 2 23 992 1014 991 1014 0.97
21 22 0.31 23 6.5 3.7 2 23 1021 1042 1020 1042 0.96
22 22 4e-07 2.9e-05 25.1 0.9 1 23 1048 1070 1048 1070 0.99

Sequence Information

Coding Sequence
ATGgatagcggtagcaaacctgccatctgcgtcggaggTCCCCTTCAAAAAATCGGAAAAGCTGAACAGTCAAGCGCAGACACGAAAGCCGAGATAAGTACAAAGAACAAGAATTTAAAATGGAATTTAGACGCGAAATGTATTCGAGTTTCCGAGAAGCATAGAAAGAATCTGTTCGAGATACTGATAAACTCTAACGCAACGCCGATCAAGAAAAGAGTGGATCAGCGATACGCGTGTTTCTTTTGCCCTCTCGCGTGTCCGGAACCTGTGGACTTAAAATTACATACCCTTCGGTACCATAATCCGAATACCATAAGGAAGGTCGTTACGGATTTAAAGGTTTACACTGTTAAACTGGATATAACCGGCTTGCAATGTTCCATTTGTGAAAGTGATATATCTACACTTGAACAACTCATGGAGCATTTGGTCGCAGCTCACGAGCGGACCATATACAAGGACATAAAAAATCAACTGGTGCCGTTTAAGTTCGAGGGAGACGAACTTCGATGCGCTTTATGTCAGACCAAATGTGCAACTTTCAAGGGTTTAACAAGCCATATGAACAGTCATTACAATAACTATCAGTGCAACGTTTGCGGGGCTGGTTTCATAAACGCTGATGTTTTACGATGCCATGTAAAGATACACGAGACGGGGACCTACAAATGTAGTCTCTGTCCCAAAACGTTTGATACGCTAGTGAAGAAAAAAGCTCATACGTATGTAACGCACGAAAAATCCAGCAGGAACAGGCAATGCGGACACTGCGATGAAGTGTTTAACGACTACCACAAGAAGATTTCACATTTAAATGAAATGCATGGCGAGAAGCTGTTGACGTTCAAATGTGATATTTGTGGTAGAATATTCAGGAAGCATACACTTTTGAAGTACCACATAAGAAAGACGCATTTGTTGGAGAAGGATTTTCAGTGCAACCATTGTGATATGAAGTTTTTCGATCGCCAACATCTAACAAGGCACATGGTCAAGCATACGGTGGAGCGAAACTACCATTGCGATACCTGTGGTCAGGCTTTCCGTAGCAGAATTAATCTCATACATCATCTGAAGGTACACAAGTCAGAACCTCCAAAAATTGAGAAGCAATCGCCAATATATTTAGTTCCTATGGATTCAGACAATGAAACTGAGCAAAGCAATCCTCTTCAAATAATCGAAAAAGCGGAAATGTCAAGCGGAGACATGGAAGCTGGGACAAGTACAAAGAAAAAGAATTATAGAAAGAATTTAGATGCGGAATGCTTCCTAAACAGTGAAAAGCATAGAAAGAATCTTTTCGAGATACTGATAAATTCTAACGCGACGCCGATCAAGAAACGAGTGGAACAGGGATACATGTGTTTCTTTTGCCCTTACGCATGCCCGGATCCCGGGGATTTGAAATTTCATACCTTACAGGATCATGGCGAGGATACTATAAGAGAAGTCGTCACGAATTTGAGGGTTTACACTGTTAAACTCGATATAACGGGCTTGCAGTGTTCGATTTGCGAAAGCGATGTTATGTGTTCTCTAGAACAACTCATGGAGCATTTGGTCACAGAACACGAGCGGACCATATACAAGGACATAAAGAATCAACTGGTGCCGTTCAAATTCAAAGGACAGGAACTGCGATGCGTTCTATGCCCGACCAAATGTGCAACTTTCAAGAGCCTAACCAGCCACATGAACATTCACTTCAAGAACTTCAAGTGCAAAATCTGTGGGACTGGCTTCATTAACACTGATACTCTAAGAACACATCTTAACGCGGTACACAGAAAATTATTTAACGACCATCGCAAGAAGAATTTAGCTTTAAATGAAAAGCACGGCGAGAAGCTATCGTTCAAATGCGATGTTTGTGATAAAACATTTAGGAAGCATACATTTTTGAAGTATCACGTAAGAAGGGTACATTTTTTGGAGAAGGAGCTTCAATGCGAGGATTGTGATATGAAGTTTTTCGATCTCAGAGATCTAAAGAGGCATATAATGAAGCATACGGGGGAGCGAAACTACCATTGCGATACTTGCGGCAAGAGTTTCGCCAGGAGATCAAATCTCATACAACATCTAAAGGTGCACATGCAAGAACGTCCAAAACTCGAAAATGACACCCAAAAATTAGTCACCGTGGATTCTGAAAGTGAAACTCTTCAAACAATTAGTACGGTGGAAAAATCAAGTGCAGTGAAAACTGGGAAAAGTACAAAGAAAAAGAATTTTAGAAAGGATTTAGATGCAGAATGCTTCGGAGTTACTGAGAAGCATAGAAAGAATCTGTTCGAGATACTTATAAACTCTAACGTAACGCCGATAAAGAAACGAGTGGATCAGGGATACAAGTGTTTCTTTTGCCCTGTCGCATGTCCGGAACCTGTGGACTTAAAATTTCATACCCTACAGGACCATGACGAGGATACCATAAGGAAGGTCATTATGGATCTGAAGGTTTATACTGTTAAACTGGATATAACTGGCTTGCAATGTTCGATTTGCGAAAGCGATATATCTACACTTGATCGATTCATGGAGCATTTGGTCACAGCTCACGAGCGGTCCATATACAAGGACATAAAAAATCAACTGGTGCCGTTTAAGTTCGAGGGAGACGAACTGCAATGTGCTCTATGCCCGACCAAATCCGCTAGTTTCAAGGGTTTAACGAGTCACATGAACATTCACTACAATAACTTTCAGTGCAAAGTCTGCGGGGCTGGCTTCATAAACAGTGAGATTCTACGGACTCACACGCAGATACACAAGACAGGGAACTTCCAATGTGATCTTTGTCCCAAAACGTTTGACACCCTCGTCAAGAAAAACAATCATATTAAAATGGTACACAGAAAGTTGTTCAAGAGCTACAAGTGTGGCTATTGCAAAGAGGTTTTCAACGAGCATCGCAAGAAGGTTATGCATTTAAGTGAGAAGCACGGGGAAAAGTTGGTGGCTCTCAAATGTAATGTGTGCGACAGGGAGTTTAATCAGAACACCCTTTTGAGGACTCACATAAGGAAGACGCATTTGTTGGAGAAGACAGTTCAATGCGAGCAGTGTGACATGAAATTTTTCTGTCGCAAATATTTGACGAATCATATGGTAAAGCACACGGGAGAGCGAAACTACCGCTGCGATTTGTGTGGGAAGGCTTTCGGCAGGAGTTTTACTCTTAAACAACATATGAGGGTGCACACGAAAGAACTTCGGAAGGTCGAGGATGAGGCGCCAAAATATACGGGCAGTGACACTGAATAG
Protein Sequence
MDSGSKPAICVGGPLQKIGKAEQSSADTKAEISTKNKNLKWNLDAKCIRVSEKHRKNLFEILINSNATPIKKRVDQRYACFFCPLACPEPVDLKLHTLRYHNPNTIRKVVTDLKVYTVKLDITGLQCSICESDISTLEQLMEHLVAAHERTIYKDIKNQLVPFKFEGDELRCALCQTKCATFKGLTSHMNSHYNNYQCNVCGAGFINADVLRCHVKIHETGTYKCSLCPKTFDTLVKKKAHTYVTHEKSSRNRQCGHCDEVFNDYHKKISHLNEMHGEKLLTFKCDICGRIFRKHTLLKYHIRKTHLLEKDFQCNHCDMKFFDRQHLTRHMVKHTVERNYHCDTCGQAFRSRINLIHHLKVHKSEPPKIEKQSPIYLVPMDSDNETEQSNPLQIIEKAEMSSGDMEAGTSTKKKNYRKNLDAECFLNSEKHRKNLFEILINSNATPIKKRVEQGYMCFFCPYACPDPGDLKFHTLQDHGEDTIREVVTNLRVYTVKLDITGLQCSICESDVMCSLEQLMEHLVTEHERTIYKDIKNQLVPFKFKGQELRCVLCPTKCATFKSLTSHMNIHFKNFKCKICGTGFINTDTLRTHLNAVHRKLFNDHRKKNLALNEKHGEKLSFKCDVCDKTFRKHTFLKYHVRRVHFLEKELQCEDCDMKFFDLRDLKRHIMKHTGERNYHCDTCGKSFARRSNLIQHLKVHMQERPKLENDTQKLVTVDSESETLQTISTVEKSSAVKTGKSTKKKNFRKDLDAECFGVTEKHRKNLFEILINSNVTPIKKRVDQGYKCFFCPVACPEPVDLKFHTLQDHDEDTIRKVIMDLKVYTVKLDITGLQCSICESDISTLDRFMEHLVTAHERSIYKDIKNQLVPFKFEGDELQCALCPTKSASFKGLTSHMNIHYNNFQCKVCGAGFINSEILRTHTQIHKTGNFQCDLCPKTFDTLVKKNNHIKMVHRKLFKSYKCGYCKEVFNEHRKKVMHLSEKHGEKLVALKCNVCDREFNQNTLLRTHIRKTHLLEKTVQCEQCDMKFFCRKYLTNHMVKHTGERNYRCDLCGKAFGRSFTLKQHMRVHTKELRKVEDEAPKYTGSDTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-