Carc013018.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072067.1:4411469-4422118[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0014 0.11 13.9 2.4 1 23 10 32 10 32 0.96 2 22 6.5e-05 0.0048 18.1 0.2 1 23 125 147 125 147 0.98 3 22 0.013 0.94 10.9 0.0 3 23 229 250 227 250 0.90 4 22 0.0047 0.35 12.3 0.3 1 23 266 288 266 288 0.94 5 22 0.0047 0.35 12.3 0.3 1 23 324 346 324 346 0.94 6 22 0.0047 0.35 12.3 0.3 1 23 382 404 382 404 0.94 7 22 0.0047 0.35 12.3 0.3 1 23 440 462 440 462 0.94 8 22 0.0047 0.35 12.3 0.3 1 23 498 520 498 520 0.94 9 22 0.0047 0.35 12.3 0.3 1 23 556 578 556 578 0.94 10 22 0.0047 0.35 12.3 0.3 1 23 599 621 599 621 0.94 11 22 0.0047 0.35 12.3 0.3 1 23 657 679 657 679 0.94 12 22 0.0047 0.35 12.3 0.3 1 23 715 737 715 737 0.94 13 22 7.7e-05 0.0057 17.9 0.2 1 23 766 788 766 788 0.98 14 22 0.0015 0.11 13.8 0.2 1 23 794 816 794 816 0.97 15 22 0.081 6 8.4 0.1 1 19 822 840 822 842 0.95 16 22 2.4 1.8e+02 3.7 0.1 7 23 852 868 852 868 0.97 17 22 0.081 6 8.4 0.1 1 19 898 916 898 918 0.95 18 22 2.4 1.8e+02 3.7 0.1 7 23 928 944 928 944 0.97 19 22 0.0015 0.11 13.8 0.2 1 23 974 996 974 996 0.97 20 22 0.00087 0.065 14.6 0.3 1 23 1085 1107 1085 1108 0.95 21 22 0.014 1.1 10.7 0.1 1 23 1121 1143 1121 1143 0.97 22 22 0.021 1.6 10.2 0.0 1 20 1302 1321 1302 1324 0.94
Sequence Information
- Coding Sequence
- ATGGTGGCGCACCAGAACGACCGGCCGCACGCCTGCAACCTGTGCGGCGTGCGCTACGTGCGCAAGTGCGACCTCATGAACCACCTCAAGGTGCACGCCATGGTGCCGGACACGCCTGACATGGTGGACTATGaaGAAGTAATCGCGCCTGAGGTGgtgaaaacaaagaaaaagaGAGGCAGACGGAAAAAGAATCCAGAACCTGTGGAGAACGGCGTGTGGGAGCACATGACGTCGGCGCGCACGCAGCAGTGGTCGCGGCGCGGCCGCACGCCGCCCAAGCCGCCCtccccgccgcgctcgccgccctccccctcgccctcgccctcgcccccgccgcccgcgccgccgcccgccgacccctCGCGCCCCTTCGTGTGCAGCCACTGCGGCGTCGGCTTCGCCAGGGAGAAAGCCCTGCAGTCGCATGCAAGGGTGCACGGCGGGGACTCGCCCGTGGagtgcggcgagtgcggcgAGCTGTGCTGGTCGCGCGAGGCGCTGCGCACGCACTGCGCCGCGCGGCACCCGCACctgccgcacgccgcgcccgccgccgaccacGCCTACGAGGACAACTCGGGCGATGACATGGAGTTCCGACTATCGCCGACCCCGCACAGCGGCAGCGAGCGCGAGCGGGAGCGGGACCGCGCGGTGGACGTGCGCGGGCCCGAGCTGTTCTGCGGCGACTGCGGCGTGGCGTTCCAGCGCGTCGACCTGCTGCGGAGACACGTGGCCGCGGCGCACAGCTACAAGCGGCACGACAGCACGAGCAGCACGTGGGAGCAGGAGCACACGTGCGACGTGTGCGGCGAGAGCTGCaccgacgcgctgcagctgctGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGctgctGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGGTACAGTGAGCAGCACGTGGGAGCAGGAGCACACGTGCGACGTGTGCGGCGAGAGCTGCaccgacgcgctgcagctgctGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGctgctGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGGTACAGTGAGCAGCACGTGGGAGCAGGAGCACACGTGCGACGTGTGCGGCGAGAGCTGCaccgacgcgctgcagctgctGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGctgctGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGGTACAGTGAGCAGCACGTGGGAGCAGGAGCACACGTGCGACGTGTGCGGCGAGAGCTGCaccgacgcgctgcagctgctGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGctgctGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGGTACAGTGAGCAGCACGTGGGAGCAGGAGCACACGTGCGACGTGTGCGGCGAGAGCTGCaccgacgcgctgcagctgctGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGctgctGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGGTACAGTGAGCAGCACGTGGGAGCAGGAGCACACGTGCGACGTGTGCGGCGAGAGCTGCaccgacgcgctgcagctgctGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGGTACAGTACAGTGAGCAGCACGTGGGAGCAGGAGCACACGTGCGACGTGTGCGGCGAGAGCTGCaccgacgcgctgcagctgctGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGctgctGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGGTACAGTGAGCAGCACGTGGGAGCAGGAGCACACGTGCGACGTGTGCGGCGAGAGCTGCaccgacgcgctgcagctgctGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGctgctGGCGCACGCTGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGGTACAGTGAGCAGCACGTGGGAGCAGGAGCACACGTGCGACGTGTGCGGCGAGAGCTGCaccgacgcgctgcagctgctGGCGCACGCGGAGCTGCACGCCGAGCGCCCGCGCACCAACAACAGATTAAAAAGAATGTCCCGAGGCAAAAATAACACGTCAACTAACGTCGGTGCAAGACAGTTCCCATGTAGAGAATGTgGCAAGGTGTTCGGGTCGCGCAGCTCGCAGCAGATCCACGTGCGCATCCACACGGGCGAGCGCCCCTACGCGTGTCGGTTCTGTTGGAAGGCCTTCGCGGACGGCGGCACTCTGCGCAAACACGAGAGGATTCACACCGGTATGCGCCCCTACGCGTGTCGGTTCTGTTGGAAGGCCTTCGCGGACGGCGGCACTCTGCGCAAACACGAGACACCGGTATGGTGCATCTATACTATTGCAGGCAAGGTGTTCGGGTCGCGCAGCTCGCAGCAGATCCACGTGCGCATCCACACGGGCGAGCGCCCCTACGCGTGCAAGGTGTTCGGGTCGCGCAGCTCGCAGCAGATCCACGTGCGCATCCACACGGGCGAGCGCCCCTACGCGTGTCGGTTCTGTTGGAAGGCCTTCGCGGACGGCGGCACTCTGCGCAAACACGAGACACCGGTATGGTGCATCTATACTATTGCAGGCAAGGTGTTCGGGTCGCGCAGCTCGCAGCAGATCCACGTGCGCATCCACACGGGCGAGCGCCCCTACGCGTGCAAGGTGTTCGGGTCGCGCAGCTCGCAGCAGATCCACGTGCGCATCCACACGGGCGAGCGCCCCTACGCGTGTCGGTTCTGTTGGAAGGCCTTCGCGGACGGCGGCACTCTGCGCAAACACGAGAGGATTCACACCGAGAGGAGCATTTTAGGGATTAAACTGAGGGACAAGATACCGAATTCACGAATCAGAGACTTAACGAGATTGGAGGATGCAGCCGAGTTGGCGTGCAAACTAAAGTGGCGCTGGGCCGGACACGTGGCTCGTGCCCGCGATGCGCGCTGGAGCGAGCTGGTGCTGCACTGGTGGGGCGGGGCCGCTGGAGCGACGACCTGGTGCGCCTGGCGGGCGCGACCTGGACGCGTctggcgcgcgaccgacagcaGCGAGAAGCCGTACGCGTGCGcggtgtgcccgcgcgcgttcaACCAGCGCGTCGTGCTGCGCGAGCACGTGCGCTCGCACCACTCCGCGCCCGACCGCCGCGCCAACGGTGGATACCAGTACACTTGCGTGGTGTGCGGCCGACCCCTGCACTCGAGCGCGGAGCTAGTTCAACATCTAATTCAGCACTGCGATGCAAACACCGCCCTGAAGAGGCAACCTCAGAGCGGGCCGAGGAAATACAAGCGGCGACGGAAAATCAAGACCGAGTCGCCCTCTCCGTTGAACTGGGGTCGCGCGTCGCcctcgccgccgcgctcgcccgcGCCGTCCCCCGCGCGCTCGCCGTCCCCCTCGCGCACCGTGTCGCGCTCCCCCTCGCCGCCGGCGCGCGtcggccgcgccgcccgctcgcAGCGCGCGCCCCGCCCGGCGCCGACGAccgcgccgcgtcgccgccgccgccgcgtgcccgccgcgccgccgcgccccaaGATGATACACACGGAGGAGCTTCGCCCCAAACCCAAACAGACGCGGAGCCGGAGACCGCCCAGACACCCCGCGGACGACCTCCGAGTGATCGGCGCGCAGTCAccctcgccgccgcccgccgccgcgtcCCCCGCGCCCCTCGCACCGCTTGCGCCCGACGACGGGCCCTACAAGTGCGAGATGTGCGCCATGGTGTTCCCGCGACGAGACGCCCTGCTCCTCCACGTGCCGTTGCACATATGA
- Protein Sequence
- MVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAMVPDTPDMVDYEEVIAPEVVKTKKKRGRRKKNPEPVENGVWEHMTSARTQQWSRRGRTPPKPPSPPRSPPSPSPSPSPPPPAPPPADPSRPFVCSHCGVGFAREKALQSHARVHGGDSPVECGECGELCWSREALRTHCAARHPHLPHAAPAADHAYEDNSGDDMEFRLSPTPHSGSERERERDRAVDVRGPELFCGDCGVAFQRVDLLRRHVAAAHSYKRHDSTSSTWEQEHTCDVCGESCTDALQLLAHAELHAERPRTNNSCWRTRSCTPSARAPTTGTVSSTWEQEHTCDVCGESCTDALQLLAHAELHAERPRTNNSCWRTRSCTPSARAPTTGTVSSTWEQEHTCDVCGESCTDALQLLAHAELHAERPRTNNSCWRTRSCTPSARAPTTGTVSSTWEQEHTCDVCGESCTDALQLLAHAELHAERPRTNNSCWRTRSCTPSARAPTTGTVSSTWEQEHTCDVCGESCTDALQLLAHAELHAERPRTNNSCWRTRSCTPSARAPTTGTVSSTWEQEHTCDVCGESCTDALQLLAHAELHAERPRTNNRYSTVSSTWEQEHTCDVCGESCTDALQLLAHAELHAERPRTNNSCWRTRSCTPSARAPTTGTVSSTWEQEHTCDVCGESCTDALQLLAHAELHAERPRTNNSCWRTLSCTPSARAPTTGTVSSTWEQEHTCDVCGESCTDALQLLAHAELHAERPRTNNRLKRMSRGKNNTSTNVGARQFPCRECGKVFGSRSSQQIHVRIHTGERPYACRFCWKAFADGGTLRKHERIHTGMRPYACRFCWKAFADGGTLRKHETPVWCIYTIAGKVFGSRSSQQIHVRIHTGERPYACKVFGSRSSQQIHVRIHTGERPYACRFCWKAFADGGTLRKHETPVWCIYTIAGKVFGSRSSQQIHVRIHTGERPYACKVFGSRSSQQIHVRIHTGERPYACRFCWKAFADGGTLRKHERIHTERSILGIKLRDKIPNSRIRDLTRLEDAAELACKLKWRWAGHVARARDARWSELVLHWWGGAAGATTWCAWRARPGRVWRATDSSEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGYQYTCVVCGRPLHSSAELVQHLIQHCDANTALKRQPQSGPRKYKRRRKIKTESPSPLNWGRASPSPPRSPAPSPARSPSPSRTVSRSPSPPARVGRAARSQRAPRPAPTTAPRRRRRRVPAAPPRPKMIHTEELRPKPKQTRSRRPPRHPADDLRVIGAQSPSPPPAAASPAPLAPLAPDDGPYKCEMCAMVFPRRDALLLHVPLHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -