Carc022221.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072076.1:11056695-11062700[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.13 9.8 7.7 0.1 2 23 19 41 18 41 0.96 2 26 0.0063 0.47 11.9 2.6 3 23 65 85 63 85 0.96 3 26 0.35 26 6.4 0.2 1 23 89 111 89 111 0.96 4 26 0.004 0.3 12.5 0.7 1 23 116 139 116 139 0.96 5 26 0.78 58 5.3 3.3 1 23 146 169 146 169 0.94 6 26 3.6e-06 0.00027 22.1 4.2 1 23 176 199 176 199 0.98 7 26 0.021 1.5 10.2 0.7 3 23 207 227 206 227 0.97 8 26 8.9e-07 6.6e-05 24.0 0.9 1 23 233 255 233 255 0.99 9 26 0.98 73 5.0 0.3 1 23 362 385 362 385 0.92 10 26 0.019 1.4 10.4 0.1 2 23 414 436 413 436 0.96 11 26 0.0004 0.029 15.6 0.5 1 23 484 506 484 506 0.98 12 26 0.006 0.44 11.9 0.7 1 23 511 534 511 534 0.97 13 26 0.3 22 6.6 0.5 2 23 542 564 541 564 0.96 14 26 1.2e-05 0.00086 20.5 2.3 3 23 573 593 571 594 0.93 15 26 0.0031 0.23 12.8 0.5 1 23 600 622 600 622 0.97 16 26 2.3e-05 0.0017 19.5 3.1 1 23 628 650 628 650 0.98 17 26 0.054 4 8.9 0.5 1 23 737 760 737 760 0.91 18 26 1.7 1.2e+02 4.2 0.0 2 23 787 809 786 809 0.93 19 26 0.14 10 7.7 2.1 2 23 832 853 831 853 0.97 20 26 1.6 1.1e+02 4.3 0.0 1 23 857 879 857 879 0.85 21 26 0.51 38 5.9 2.9 1 19 884 902 884 904 0.86 22 26 0.036 2.7 9.5 1.5 2 23 915 937 914 937 0.93 23 26 0.00094 0.07 14.5 1.1 2 23 945 967 944 967 0.96 24 26 0.00029 0.021 16.1 1.2 1 23 973 995 973 995 0.95 25 26 2e-05 0.0015 19.7 1.2 1 23 1001 1023 1001 1023 0.98 26 26 8.8e-05 0.0065 17.7 4.5 1 23 1029 1052 1029 1052 0.98
Sequence Information
- Coding Sequence
- ATGTTCATTACGGATTTAAGGCTCTATACCGTGAAGTTAGATATAACAGACTTGCAATGCACAATTTGTGACAGTGAAATATCTACCCTCGAAGGACTCATGGATCACTTGATGAAGTCTCACGAGCGGACCATACACACGGACATAAAGAATCAGCTGATACctttcaaatttgaaggcgACGATCTGGACTGCGCTCTGTGCTCGACGAAATGTTCGACTTTCAAAAATTTAACGAACCACATGAACGTTCACTACAGCAACTTCGAGTGCAGCGCCTGTGGCGCCGGTTTCATTAACAATGATGTTCTACGATGCCATGAAAGAATACACAAGACGGGTACGTTCCAGTGCGATCTGTGCCCCAAAACGTTTGACACGCTTGTGAGGAAAAGGACTCATATTAACGTAACGCACAAGAAATCCAGCAGAAACCACAAGTGCGGATACTGTGACGAGCTGTTTAACGACTACCACAAGAagaatttacatttaaatgAGATACACGGAGAGAAGTTGTTGACGTACAAATGCGATGTGTGTGATAGGACGTTTAGGAAGCACACGCTTTTGAAGAACCACATGAGGAAGATACATTTCATGGAGAGGGATGTCCTATGCGACTTTTGCGATATGAGGTTTTTCGCCCGCAAAGATCTGGTGCGGCATATGGTGAAGCATACGGGAGTGCGGAACTACCGCTGCGATTTGTGCGGGAAGGCTTTCGGTAGGAGTTTTACTCTCAAACAACATATGAAAGTACACACAAAAGAACGTAAACACTCGGATAGAGAAAATGAAGAAGACGGAAGTGTAATCAAAGTCACTATAACAAGACTATCGCTACAAGAAGATATAATAGACATAGAAGATGTAATAGATACAGAAGATGTAATAGATACAGAAGATGTAATAGATAAAGATGATATAGAATACAATCCGGAAAAAGTAAAGAAACCAAGCGGTAAAAAGGAAGCCGTCAAAATTAAACCTATAAAAGAATTGTCCAAGCATCACAATAATATCATAGAAGTACTTAAATGCTCTAATGCTACTCCAATTCGCGGTAAAAGCGATATCGGTTATATGTGCTGCTATTGCGCAGACCAATATCCTGATCCAGCTGATTTGAAAGCACACACACTAGCTAAACACGACAATGCAGACGATCCAAACGCtattttcctgaaaaaaaaggatttaaagaaatataacGTTAAAGTTGACATCACGGGATTGAAATGCAAAACATGTTCGGAACCTCTAAATAATTTGGACGACTTAATCGATCATTTGATAACGGagcacaaaagaaatatatacaCGGACGTAAAGAATCACATGATTCCGTTTAAATTCGAAAGCGGAGATCTGAAATGCTTTATTTGCTCAAACGTGtacacgaaattcaaaattcttcTGGAGCATATGCATAGACATTGCAGGAATTTCGAGTGCGAGCTATGCGGCGCTAGTTTCTTCAACCGCAGATCCTTGTTGAACCACGAGCAAAGTCACAACGTTGGAGAATTCAAATGTGAACAATGCGAGAAGGTTTTCGACAACGTCCAAAAGAAGCAGTCTCACGTGCGCATCGTCCACGTCCATGGATACCTGTTGAACAAATGCGGGTATTGCAACCAGAAGTTTCCAGGGTACAGGATGAAAGCTGAGCATTTGAAGACCGTGCACGGGATCGGGACAGGACGTATCGCCTGTCAAGCTTGCGATAAAAGCTTCTCAAATAAAGATTCTTTAAGGAAACACGTCAAACGCCACCATTTGATGGAGAGTCGTTATAATTGTACAGAGTGCGAGATGAAGTTTTACTCGGGCAAGGATCTGGAGGAGCATATGGTGAAGCACACGAAGACCCGCAGCTTCGAGTGCAAGGTGTGCTCGAAGCGGTATGGCAGGCAGCACACGCTGCGCGAACATATGAGGATACACGAGAACGATCGCCGGTTCAAGTGCGATCACTGTGCACGCCGTCACAAAACAATTGAAATATATATCGAAGGATCGACAAAAAAATCTAGAAAGCAAACACCGGAAATAGTATTGAAAAAGCGCGGAGAATTACGGATACAGAACCATCGagagataataattaaaaagggCGGAGAGTTGCAGAAGCACCGCTTCAACCTGAGAGAGATCCTTCTTAACACTAACGCGACGCCCATACGCTGTCGAGGCGGCATCGGATACGCTTGTTGCTTTTGCGACGACCAGTTCCCCGATCCAGCGGACTTGAAAAGACACACGATAGACTCCCACGACGAAAACACCAAACTGAACTTCATGAAAGGCAAAGACATGTACAAGTTCCACGTTAAACTCGATATCACAGCGTTAAAATGCAACATCTGCAATGCCGACCTCGATACTCTAGAACAAATCATAGACCACTTGAAAGAAGTCCACGATAAAGAACTGTATACCGACATTAAGCAACAAATCCTGCCTTTCAAGTTCAACACCGAACAGCTGGAGTGTTTTATTTGTCAGAACGTCTACCACAAATTCAAGTCCCTCCTAGAGCACATGAATACGCATTACCGGAATTTCATATGCGAAGTGTGCGACGCCGGCTTCGTGAGTCGGGTGATTCTAGCGCAGCACGCTGAAGGCCATAAAACCGGCATCTTCAATTGCGATTACTGTTCTAAAACCTTTGACACATTCAGGAAGAAACGCTCGCACGAGAAGTGCGTGCACACTGATTCGGCCACTCTGAACAAATGCGGGTATTGCAACGAAAAGTTTAAGGACTATCGCAAGAAGGAGCGGCATTTAAGCGAAGTGCATGGGGTAAATTCGCACATGGTGACGTGCCAAGCCTGCGGGAAGGCGTTCCACAATCAGAAGGAGTACACCGTTCACGTGAGGAGGTTACATTTGATGGACCGACGGTTTAAGTGCACAGAGTGTGACATGTCATTTTTTTCGTCGGCGGAGCTGAAGAGCCATAGCGTGAAGCACACGGGAGTGAGGAAGTTTGAATGCGAAGTGTGTCACAAGGCGTATGGACGCCTGAAGACTCTGCGGGAGCATATGAGGATCCATATGGACGATCGGCGCTTCAAATGCGAGCATTGCGGGCAGGCGTTCGTGCAGAAGTGCAGTTGGCGCGGGCATATGCGGACTAAACATGGGGAACAAGTCTAA
- Protein Sequence
- MFITDLRLYTVKLDITDLQCTICDSEISTLEGLMDHLMKSHERTIHTDIKNQLIPFKFEGDDLDCALCSTKCSTFKNLTNHMNVHYSNFECSACGAGFINNDVLRCHERIHKTGTFQCDLCPKTFDTLVRKRTHINVTHKKSSRNHKCGYCDELFNDYHKKNLHLNEIHGEKLLTYKCDVCDRTFRKHTLLKNHMRKIHFMERDVLCDFCDMRFFARKDLVRHMVKHTGVRNYRCDLCGKAFGRSFTLKQHMKVHTKERKHSDRENEEDGSVIKVTITRLSLQEDIIDIEDVIDTEDVIDTEDVIDKDDIEYNPEKVKKPSGKKEAVKIKPIKELSKHHNNIIEVLKCSNATPIRGKSDIGYMCCYCADQYPDPADLKAHTLAKHDNADDPNAIFLKKKDLKKYNVKVDITGLKCKTCSEPLNNLDDLIDHLITEHKRNIYTDVKNHMIPFKFESGDLKCFICSNVYTKFKILLEHMHRHCRNFECELCGASFFNRRSLLNHEQSHNVGEFKCEQCEKVFDNVQKKQSHVRIVHVHGYLLNKCGYCNQKFPGYRMKAEHLKTVHGIGTGRIACQACDKSFSNKDSLRKHVKRHHLMESRYNCTECEMKFYSGKDLEEHMVKHTKTRSFECKVCSKRYGRQHTLREHMRIHENDRRFKCDHCARRHKTIEIYIEGSTKKSRKQTPEIVLKKRGELRIQNHREIIIKKGGELQKHRFNLREILLNTNATPIRCRGGIGYACCFCDDQFPDPADLKRHTIDSHDENTKLNFMKGKDMYKFHVKLDITALKCNICNADLDTLEQIIDHLKEVHDKELYTDIKQQILPFKFNTEQLECFICQNVYHKFKSLLEHMNTHYRNFICEVCDAGFVSRVILAQHAEGHKTGIFNCDYCSKTFDTFRKKRSHEKCVHTDSATLNKCGYCNEKFKDYRKKERHLSEVHGVNSHMVTCQACGKAFHNQKEYTVHVRRLHLMDRRFKCTECDMSFFSSAELKSHSVKHTGVRKFECEVCHKAYGRLKTLREHMRIHMDDRRFKCEHCGQAFVQKCSWRGHMRTKHGEQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -