Carc008246.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- znf711
- Assembly
- GCA_036785405.1
- Location
- CM072062.1:6803326-6813514[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0069 0.51 11.7 1.8 2 23 57 78 56 78 0.96 2 19 2 1.5e+02 4.0 0.8 3 23 86 107 84 107 0.91 3 19 0.00015 0.011 17.0 5.3 1 23 143 165 143 165 0.97 4 19 6.1e-06 0.00045 21.3 2.5 1 23 171 193 171 193 0.96 5 19 0.00093 0.069 14.5 0.6 1 21 199 219 199 220 0.94 6 19 0.0094 0.7 11.3 0.2 3 23 239 260 238 260 0.95 7 19 0.0011 0.082 14.2 3.9 1 23 607 629 607 629 0.98 8 19 4.3e-05 0.0032 18.7 2.0 1 23 636 659 636 659 0.92 9 19 0.00027 0.02 16.2 0.4 3 23 699 720 698 720 0.92 10 19 0.00027 0.02 16.2 0.4 3 23 760 781 759 781 0.92 11 19 0.00027 0.02 16.2 0.4 3 23 821 842 820 842 0.92 12 19 0.00027 0.02 16.2 0.4 3 23 882 903 881 903 0.92 13 19 0.00027 0.02 16.2 0.4 3 23 943 964 942 964 0.92 14 19 0.00027 0.02 16.2 0.4 3 23 1004 1025 1003 1025 0.92 15 19 0.00027 0.02 16.2 0.4 3 23 1065 1086 1064 1086 0.92 16 19 0.00027 0.02 16.2 0.4 3 23 1126 1147 1125 1147 0.92 17 19 0.023 1.7 10.1 0.9 1 23 1155 1178 1155 1178 0.93 18 19 0.0012 0.088 14.1 3.7 1 23 1184 1208 1184 1208 0.98 19 19 0.003 0.22 12.9 3.3 1 21 1214 1234 1214 1235 0.95
Sequence Information
- Coding Sequence
- ATGGAATCTAATATGTCTTTTTTTAGTTTACCTTTCGTAGATTCAGAGACTACCGATCTAGACTTGCCATCCCACAGTGGGCTTTTGGGCTCGGACGATGTTCTGGCACAGTTCCTAACCGCCGATGGGCCTTTGGAAGAACCTGATTTGAATGGACCAACGACCCTGCACTGTGAAATATGCCAAAAGCGTTTTGATAACGCCAAGAAGTATTATGGACACTTACGAATACATTCCAAAGATAATGATTGGATATGTGATAAATGTCCAGAGGAGAAGTTTCCTAGTAAGCAGGCTCTGATGAAGCACTGCCTCACTCACAAGCCCCTGGCACGAGTGTGGAAGTGCCTGCAGTGCACCATGGCCTTCGAGGCTCTGTGGCGACTTCAGCAACATGTGTTTGCTATACACCTGCATTATAGATCTCACAAGTGTGACCAGTGTGATAAATCTTTTCACAAACTATCAGATTTGAAGAAGCATCAAGATATTCATAACAaaatgaaaaattttgcttGCACATTCTGTGAGAAAAAGTTCAGCGACAAATCAAACCTCAAGAGGCATACGCTGCTTCACTCCAAGATTAAACCTTTTGCCTGTACTGGCTGTCAAAACAGATTCACTCAGTTAGCCTCCCTAAAACGTCATCAACAAAAGTGCAACTGTTATATTAGTCAAAATGACCATCAggataaaagtagaaaaaactACTGCCGAGTGTGTGGCGCGACATTTCAATATAAAAGCGCATTGCTGGAACATTATATAAGacAACACACAACTAATACTGAGGAACAAAAGGAGGTccaaacaaatgaaagcaatatTGATATGAGCAGAACTGAAGACAACATTGTTGACGATATTCTATCAGCAGAAGACGATTACATGGCCATGTCTACTCAGCAGGACCTCTACAACCAAACCAACGCGCAGTCACTAAATATGCCAGACACGAATACATATGATAGTTTAATGCAAATAGAATTCCTCAAAGAAATGAATCAGTTGCATATACTGGACGATGAGATACTGTACAACGATTTAGACTTCGACAGCTTACAAAACAGTCATATTTTTAACAGTATTGCTGAGACAGAGGATTTTACCAATAGGAACGAAGAAGAAATATTGTTTGATTTCCATGACGTAGGCAGAAGTGAAGATCAAGACATCGGACTGGGTGGCGTGAAACCACACTTGCCAGACGAGCTACTGAATGTAGACCACATGAACACTCCTGTGCCGAGTGAAGAaaggcttcaaactccaacagtATCCGTCAACGAGTGCGCGACTATATTTGAACGCGATGTCGACTTAGAGGAGAGTACCAATTTAGCTGCAAATTTGAACCAATTGATAGGGGAAAACAGTGTTCACTACATTGCGACTGAAGACGACGATATGTTCATAATCAGTTTGAAGAGCGAAATGGATGCGGAAAAGTTGACCGACTTGTTGAACATCGACGTTAAAGCCGACACCGCTGGCTCCGGAGACGTGTCAGAGTCGGAGGATATGCTTCAAGATCTCGAtgaaaagagtagaaaaattcTAGACAATATACAACCTTTTGTGATCAGCGCGCAGCCCCCAGCACCAGTGAGACAAATAAAAATCGAAGTAAACTGTGATTACCGCAACGTCATTGAAAAGGATTTGGAAATCCTTGAAAGCGGTAAAGACAAGCGCCAATTGAACAACAATAAAGTAAAAattgttaatattataaaacatgaaaatatcaaagaagGCAGAAAAGATGACGCAAAAAAAGATGATGGGAAAAAAGGAAAACATAAGCAGTCCACTTTTGTTTGCAAGATCTGTAACAAGACATTTAACAAAAAAGACAATTGCAGATCCCACGTAGCGACTCACTCCGCGTCTCTGCGGCGTCACCGTTGCAGCGTGTGCGGCGAGCGCTTCAGCTACCGCTCCTCGCTCAACAagcaccgcgccgcgcgccacgAGCCGCGCGTGCAGCCCGCGCACGCCTGCGCGCTCTGCGACCGCGTCTTCCCCGCGCAGTGGCTGGTGAGCATGCAGCTGTGTTGTCATCTCCGCCAGCGACCCACTCCGCGTCTCTGCGGCGTGTGCGGCGAGCGCTTCAGCTACCGCTCCTCGCTCAACAagcaccgcgccgcgcgccacgAGCCGCGCGTGCAGCCCGCGCACGCCTGCGCGCTCTGCGACCGCGTCTTCCCCGCGCAGTGGCTGGTGAGCATGCAGCTGTGTTGTCATCTCCGCCAGCGACCCACTCCGCGTCTCTGCGGCGTGTGCGGCGAGCGCTTCAGCTACCGCTCCTCGCTCAACAagcaccgcgccgcgcgccacgAGCCGCGCGTGCAGCCCGCGCACGCCTGCGCGCTCTGCGACCGCGTCTTCCCCGCGCAGTGGCTGGTGAGCATGCAGCTGTGTTGTCATCTCCGCCAGCGACCCACTCCGCGTCTCTGCGGCGTGTGCGGCGAGCGCTTCAGCTACCGCTCCTCGCTCAACAagcaccgcgccgcgcgccacgAGCCGCGCGTGCAGCCCGCGCACGCCTGCGCGCTCTGCGACCGCGTCTTCCCCGCGCAGTGGCTGGTGAGCATGCAGCTGTGTTGTCATCTCCGCCAGCGACCCACTCCGCGTCTCTGCGGCGTGTGCGGCGAGCGCTTCAGCTACCGCTCCTCGCTCAACAagcaccgcgccgcgcgccacgAGCCGCGCGTGCAGCCCGCGCACGCCTGCGCGCTCTGCGACCGCGTCTTCCCCGCGCAGTGGCTGGTGAGCATGCAGCTGTGTTGTCATCTCCGCCAGCGACCCACTCCGCGTCTCTGCGGCGTGTGCGGCGAGCGCTTCAGCTACCGCTCCTCGCTCAACAagcaccgcgccgcgcgccacgAGCCGCGCGTGCAGCCCGCGCACGCCTGCGCGCTCTGCGACCGCGTCTTCCCCGCGCAGTGGCTGGTGAGCATGCAGCTGTGTTGTCATCTCCGCCAGCGACCCACTCCGCGTCTCTGCGGCGTGTGCGGCGAGCGCTTCAGCTACCGCTCCTCGCTCAACAagcaccgcgccgcgcgccacgAGCCGCGCGTGCAGCCCGCGCACGCCTGCGCGCTCTGCGACCGCGTCTTCCCCGCGCAGTGGCTGGTGAGCATGCAGCTGTGTTGTCATCTCCGCCAGCGACCCACTCCGCGTCTCTGCGGCGTGTGCGGCGAGCGCTTCAGCTACCGCTCCTCGCTCAACAagcaccgcgccgcgcgccacgAGCCGCGCGTGCAGCCCGCGCACGCCTGCGCGCTCTGCGACCGCGTCTTCCCCGCGCAGTGGCTGGTGAGCATGCAGCTGTGTTGTCATCTCCGCCAGCGACCCACTCCGCGTCTCTGCGGCGTGTGCGGCGAGCGCTTCAGCTACCGCTCCTCGCTCAACAagcaccgcgccgcgcgccacgAGCCGCGCGTGCAGCCCGCGCACGCCTGCGCGCTCTGCGACCGCGTCTTCCCCGCGCAGTGGCTGCTAAAACATCACAAGGAACGCGATCACGACCAGTTGAAACCCTACAAGTGTGACGAGAAGGATTGCAACAAAAGTTTCTATAAGAATTGCGATCTAGTCATTCATAAAagGAGCCACACCGGCGAGAAGCCTTTCAAGTGCGAGGTTTGCAACAAGGCGTACCAGCACGTGTCGCACCTGCACCGCCACGAGCGCTCCGTCGACTGCACCCGACGAACCAGCGTTCcgtcatcagaagtgggatcgaaCGATCCCACAGCTGCGGTTCCCAGCACCTCCAGAAACGTAAGTTCCCAGCCCGCACAAATAACGGCAGAAAATTCATCACACAACGCCACGCATACACCGGAGAATGTGTCCACTCTACCGGTGCAGCCAGCCGCTGCATCCGCAAACATCGACATGCCAGCTAGTTTGCTCATGCAGATGATGCAAACTATGAGAGAAATGTCTGAACGGTTGTCGGTACCGCGGCCACCCGAAAAGGTAAAAATTAATGACATATTTCTACCATCTTACGATCCTGACACTAACGTTGGTATTCGAGAATGGTGCCAGCACGTCACACAGGCGATAGACTTGTATAACCTCAATGATTACGAAGTTCGGATGAAGGTAGGTAGTCTGCTTAAAGGACGAGCCAAATAA
- Protein Sequence
- MESNMSFFSLPFVDSETTDLDLPSHSGLLGSDDVLAQFLTADGPLEEPDLNGPTTLHCEICQKRFDNAKKYYGHLRIHSKDNDWICDKCPEEKFPSKQALMKHCLTHKPLARVWKCLQCTMAFEALWRLQQHVFAIHLHYRSHKCDQCDKSFHKLSDLKKHQDIHNKMKNFACTFCEKKFSDKSNLKRHTLLHSKIKPFACTGCQNRFTQLASLKRHQQKCNCYISQNDHQDKSRKNYCRVCGATFQYKSALLEHYIRQHTTNTEEQKEVQTNESNIDMSRTEDNIVDDILSAEDDYMAMSTQQDLYNQTNAQSLNMPDTNTYDSLMQIEFLKEMNQLHILDDEILYNDLDFDSLQNSHIFNSIAETEDFTNRNEEEILFDFHDVGRSEDQDIGLGGVKPHLPDELLNVDHMNTPVPSEERLQTPTVSVNECATIFERDVDLEESTNLAANLNQLIGENSVHYIATEDDDMFIISLKSEMDAEKLTDLLNIDVKADTAGSGDVSESEDMLQDLDEKSRKILDNIQPFVISAQPPAPVRQIKIEVNCDYRNVIEKDLEILESGKDKRQLNNNKVKIVNIIKHENIKEGRKDDAKKDDGKKGKHKQSTFVCKICNKTFNKKDNCRSHVATHSASLRRHRCSVCGERFSYRSSLNKHRAARHEPRVQPAHACALCDRVFPAQWLVSMQLCCHLRQRPTPRLCGVCGERFSYRSSLNKHRAARHEPRVQPAHACALCDRVFPAQWLVSMQLCCHLRQRPTPRLCGVCGERFSYRSSLNKHRAARHEPRVQPAHACALCDRVFPAQWLVSMQLCCHLRQRPTPRLCGVCGERFSYRSSLNKHRAARHEPRVQPAHACALCDRVFPAQWLVSMQLCCHLRQRPTPRLCGVCGERFSYRSSLNKHRAARHEPRVQPAHACALCDRVFPAQWLVSMQLCCHLRQRPTPRLCGVCGERFSYRSSLNKHRAARHEPRVQPAHACALCDRVFPAQWLVSMQLCCHLRQRPTPRLCGVCGERFSYRSSLNKHRAARHEPRVQPAHACALCDRVFPAQWLVSMQLCCHLRQRPTPRLCGVCGERFSYRSSLNKHRAARHEPRVQPAHACALCDRVFPAQWLVSMQLCCHLRQRPTPRLCGVCGERFSYRSSLNKHRAARHEPRVQPAHACALCDRVFPAQWLLKHHKERDHDQLKPYKCDEKDCNKSFYKNCDLVIHKRSHTGEKPFKCEVCNKAYQHVSHLHRHERSVDCTRRTSVPSSEVGSNDPTAAVPSTSRNVSSQPAQITAENSSHNATHTPENVSTLPVQPAAASANIDMPASLLMQMMQTMREMSERLSVPRPPEKVKINDIFLPSYDPDTNVGIREWCQHVTQAIDLYNLNDYEVRMKVGSLLKGRAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -