Carc025168.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072081.1:783329-795702[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00021 0.016 16.5 0.1 1 23 186 209 186 209 0.95 2 18 0.00012 0.009 17.3 0.8 2 23 234 256 234 256 0.96 3 18 3e-05 0.0022 19.2 0.3 1 23 262 284 262 284 0.98 4 18 3e-05 0.0022 19.2 0.3 1 23 311 333 311 333 0.98 5 18 3e-05 0.0022 19.2 0.3 1 23 360 382 360 382 0.98 6 18 3e-05 0.0022 19.2 0.3 1 23 409 431 409 431 0.98 7 18 3e-05 0.0022 19.2 0.3 1 23 458 480 458 480 0.98 8 18 3e-05 0.0022 19.2 0.3 1 23 507 529 507 529 0.98 9 18 3e-05 0.0022 19.2 0.3 1 23 556 578 556 578 0.98 10 18 3e-05 0.0022 19.2 0.3 1 23 605 627 605 627 0.98 11 18 3e-05 0.0022 19.2 0.3 1 23 654 676 654 676 0.98 12 18 3e-05 0.0022 19.2 0.3 1 23 703 725 703 725 0.98 13 18 3e-05 0.0022 19.2 0.3 1 23 752 774 752 774 0.98 14 18 0.0084 0.62 11.5 0.3 2 22 783 803 782 807 0.92 15 18 3.2e-05 0.0024 19.1 0.5 1 23 815 838 815 838 0.93 16 18 0.3 22 6.6 5.2 1 23 844 867 844 867 0.96 17 18 0.00062 0.046 15.0 0.2 3 23 877 898 876 898 0.91 18 18 0.041 3 9.3 0.1 1 23 904 927 904 927 0.96
Sequence Information
- Coding Sequence
- ATGAACGAGCTGTGTACGACTTGTTTAATTGGCGGGCGGAATCTATATATTATAGAAGGGACTGATATGGAGCACCTTTTCCTTCAAATTCTAAATGAAATATCGGTGTGCTGGGAGTGCTGCGCGCTGCTCCGAAGATTCCAGCGGTTCAAGAGACAAGCGCAGGAATGCTGCACAGAGCTGCTGGGTGTAGCTTATCAGAGCTCAACACACAGACAGCACAAGTCTCGCCTCTCGACCCAACACCTGCACAGCATCAGCTACCCGGAGCCCATCAGCACGGCTGTCAAGGTGGAAGGTGACCCCAGCATCAAGCCCGAGCCCCTGGAAGACAGTGACACCCACTTTGAGCCAGAGACCTTTGTTAATGACCTGCAAGTAGCTGGTGATGTAGAAATAACTAAAGGGATGAAGGAGAAAAAGACTTTAAAAAAGAAATCGAAACAGAAAGTGaaattaaaaaggaaaaaagagAAAGTGGTCATCAAAGAGAGCTCGGACGCAGGCAGTGACTGCGCCGATTTTGATGCAACAGAGAGCGGTACAGAAGCGGGCTTCCCCTGTGGCCTTTGCCAGCAGAGTTTCCGAGATGAGGAAGAATTGGCGAAACATATAGATAGTCAACATTCTATAAAAGAGTCCGTGAAACAGAACGGCGCGCCGCGGCCGCGTAACAGAGAGCCCCTGCCGGACAAACCCCAGTGCGTCGAGTGCGGGAAGATGTTCAGCTCGCGCAAGACCTACCGATACCATCTCAACGTGCTCCACCGCGGACAGAACCGCTACCCGTGCCCGCGCTGCGGCAAGGTGTACCAGTGGAAGTCCAACCTGGGCCGCCACATGCGCAGCCACAAGGTACGCGACcacccgagccgcaggcgagcggCTTTACACGTTTGTTGCAGCGTGCTCCACCGCGGACAGAACCGCTACCCGTGCCCGCGCTGCGGCAAGGTGTACCAGTGGAAGTCCAACCTGGGCCGCCACATGCGCAGCCACAAGGTACGCGACcacccgagccgcaggcgagcggCTTTACACGTTTGTTGCAGCGTGCTCCACCGCGGACAGAACCGCTACCCGTGCCCGCGCTGCGGCAAGGTGTACCAGTGGAAGTCCAACCTGGGCCGCCACATGCGCAGCCACAAGGTACGCGACcacccgagccgcaggcgagcggCTTTACACGTTTGTTGCAGCGTGCTCCACCGCGGACAGAACCGCTACCCGTGCCCGCGCTGCGGCAAGGTGTACCAGTGGAAGTCCAACCTGGGCCGCCACATGCGCAGCCACAAGGTACGCGACcacccgagccgcaggcgagcggCTTTACACGTTTGTTGCAGCGTGCTCCACCGCGGACAGAACCGCTACCCGTGCCCGCGCTGCGGCAAGGTGTACCAGTGGAAGTCCAACCTGGGCCGCCACATGCGCAGCCACAAGGTACGCGACcacccgagccgcaggcgagcggCTTTACACGTTTGTTGCAGCGTGCTCCACCGCGGACAGAACCGCTACCCGTGCCCGCGCTGCGGCAAGGTGTACCAGTGGAAGTCCAACCTGGGCCGCCACATGCGCAGCCACAAGGTACGCGACcacccgagccgcaggcgagcggCTTTACACGTTTGTTGCAGCGTGCTCCACCGCGGACAGAACCGCTACCCGTGCCCGCGCTGCGGCAAGGTGTACCAGTGGAAGTCCAACCTGGGCCGCCACATGCGCAGCCACAAGGTACGCGACcacccgagccgcaggcgagcggCTTTACACGTTTGTTGCAGCGTGCTCCACCGCGGACAGAACCGCTACCCGTGCCCGCGCTGCGGCAAGGTGTACCAGTGGAAGTCCAACCTGGGCCGCCACATGCGCAGCCACAAGGTACGCGACcacccgagccgcaggcgagcggCTTTACACGTTTGTTGCAGCGTGCTCCACCGCGGACAGAACCGCTACCCGTGCCCGCGCTGCGGCAAGGTGTACCAGTGGAAGTCCAACCTGGGCCGCCACATGCGCAGCCACAAGGTACGCGACcacccgagccgcaggcgagcggCTTTACACGTTTGTTGCAGCGTGCTCCACCGCGGACAGAACCGCTACCCGTGCCCGCGCTGCGGCAAGGTGTACCAGTGGAAGTCCAACCTGGGCCGCCACATGCGCAGCCACAAGGTACGCGACcacccgagccgcaggcgagcggCTTTACACGTTTGTTGCAGCGTGCTCCACCGCGGACAGAACCGCTACCCGTGCCCGCGCTGCGGCAAGGTGTACCAGTGGAAGTCCAACCTGGGCCGCCACATGCGCAGCCACAAGGCTCGCGACAACAACGAGCTGTACTGCGCTCTGTGCGACAAGCGGTTCGCGTCCGTCGCCACCTACCGGCAGCACCTGCGCGTGTCGCGGCAACACGTCTCCGAGAAGGACTTCACTTTTATGTGCAACGAGTGTGGCAAGAAGTTCGTGAATAAAACCCGGCTGCGAGACCACATCGACTGGGAGCACCTCAACAAGATCAAGTTCCGCTGTCAGCTCTGCAACAAGCCATTCAAATGCCACACCTCGCTGTACGTGCACTTGCAGAACGTTCACCGCAACAAGGAGAAGAAGGAGAACCTGTGCCACGTGTGCGGCAAGTCTTATCCAAACGCTGCCAAGCTGAAGTACCACATAGTGGCGATGCACACTAGCGAAACTCCGTACCGCTGCGCTCAGTGCGGTGCGGCCTTCGGCTGGTACTCCTCGCTGTACCGGCACGTGAGGGAGGTACACTACAAGATGAAGCTCCAGCCGAACAGAATAAGGAAACAGAAGCTGAAAAAGTCCACGGATCTGCTGCCGCCCTTGCCTCTTCTGCCGCCCCTGCACTCGGCCGCCCCGCCGACCTAG
- Protein Sequence
- MNELCTTCLIGGRNLYIIEGTDMEHLFLQILNEISVCWECCALLRRFQRFKRQAQECCTELLGVAYQSSTHRQHKSRLSTQHLHSISYPEPISTAVKVEGDPSIKPEPLEDSDTHFEPETFVNDLQVAGDVEITKGMKEKKTLKKKSKQKVKLKRKKEKVVIKESSDAGSDCADFDATESGTEAGFPCGLCQQSFRDEEELAKHIDSQHSIKESVKQNGAPRPRNREPLPDKPQCVECGKMFSSRKTYRYHLNVLHRGQNRYPCPRCGKVYQWKSNLGRHMRSHKVRDHPSRRRAALHVCCSVLHRGQNRYPCPRCGKVYQWKSNLGRHMRSHKVRDHPSRRRAALHVCCSVLHRGQNRYPCPRCGKVYQWKSNLGRHMRSHKVRDHPSRRRAALHVCCSVLHRGQNRYPCPRCGKVYQWKSNLGRHMRSHKVRDHPSRRRAALHVCCSVLHRGQNRYPCPRCGKVYQWKSNLGRHMRSHKVRDHPSRRRAALHVCCSVLHRGQNRYPCPRCGKVYQWKSNLGRHMRSHKVRDHPSRRRAALHVCCSVLHRGQNRYPCPRCGKVYQWKSNLGRHMRSHKVRDHPSRRRAALHVCCSVLHRGQNRYPCPRCGKVYQWKSNLGRHMRSHKVRDHPSRRRAALHVCCSVLHRGQNRYPCPRCGKVYQWKSNLGRHMRSHKVRDHPSRRRAALHVCCSVLHRGQNRYPCPRCGKVYQWKSNLGRHMRSHKVRDHPSRRRAALHVCCSVLHRGQNRYPCPRCGKVYQWKSNLGRHMRSHKARDNNELYCALCDKRFASVATYRQHLRVSRQHVSEKDFTFMCNECGKKFVNKTRLRDHIDWEHLNKIKFRCQLCNKPFKCHTSLYVHLQNVHRNKEKKENLCHVCGKSYPNAAKLKYHIVAMHTSETPYRCAQCGAAFGWYSSLYRHVREVHYKMKLQPNRIRKQKLKKSTDLLPPLPLLPPLHSAAPPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -