Carc025874.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coenonympha arcania
Gene Symbol
Znf711
Assembly
GCA_036785405.1
Location
CM072081.1:8862578-8867289[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 6.9e-06 0.00051 21.2 2.5 1 23 123 145 123 145 0.97
2 30 0.0006 0.045 15.1 5.0 1 23 151 173 151 173 0.99
3 30 0.00068 0.051 14.9 4.7 1 23 179 201 179 201 0.97
4 30 0.0024 0.18 13.2 6.8 1 20 207 226 207 229 0.95
5 30 0.00013 0.0096 17.2 1.7 1 23 235 257 235 257 0.97
6 30 0.0012 0.087 14.2 0.3 1 23 263 285 263 285 0.97
7 30 0.00011 0.0083 17.4 1.0 1 23 291 314 291 314 0.95
8 30 0.00014 0.011 17.0 0.9 1 23 320 342 320 342 0.99
9 30 0.17 13 7.4 0.5 10 23 354 367 352 367 0.92
10 30 0.0062 0.46 11.9 3.3 1 23 373 395 373 395 0.98
11 30 2.3e-05 0.0017 19.5 3.5 3 23 403 423 401 423 0.96
12 30 0.23 17 6.9 1.7 1 23 429 451 429 451 0.98
13 30 0.083 6.2 8.3 1.1 1 23 457 479 457 479 0.98
14 30 8.9e-05 0.0066 17.7 2.2 1 23 485 506 485 506 0.97
15 30 0.00028 0.021 16.1 0.2 1 23 512 534 512 534 0.97
16 30 0.0069 0.51 11.7 1.0 1 23 540 562 540 562 0.97
17 30 8.2e-05 0.0061 17.8 3.6 1 21 568 588 568 590 0.96
18 30 0.00026 0.019 16.2 0.7 1 23 596 618 596 618 0.96
19 30 0.002 0.15 13.4 0.6 1 23 624 646 624 646 0.98
20 30 0.0029 0.21 12.9 3.7 1 23 652 674 652 674 0.96
21 30 0.00023 0.017 16.4 0.9 1 23 680 702 680 702 0.98
22 30 0.00012 0.0087 17.3 8.2 1 23 708 730 708 730 0.98
23 30 0.25 18 6.8 0.4 1 23 736 758 736 758 0.96
24 30 0.00084 0.062 14.6 2.4 1 23 764 786 764 786 0.98
25 30 0.0004 0.03 15.6 4.1 1 23 792 814 792 814 0.98
26 30 0.016 1.2 10.6 3.5 1 23 820 842 820 842 0.98
27 30 0.09 6.6 8.2 9.1 1 23 848 870 848 870 0.98
28 30 0.00023 0.017 16.4 3.1 1 23 876 898 876 898 0.99
29 30 0.0011 0.082 14.2 1.1 1 23 904 926 904 926 0.98
30 30 2.1 1.6e+02 3.9 2.2 1 23 932 954 932 954 0.97

Sequence Information

Coding Sequence
ATGGAGAAGGAAACCAAAGAACTGCGCATCCTACGCGTCGTGCTGTCCAAACTGAAGATGCAGAATCTACCTACCGGTGACTGTTCTGTCGTGAACTCCACTGATTTCGAGAAGTTCATTGCCAAGATCACGCCGAAGAAAGATGCCGACGGAGGGTACCACAGAGTAAAAACAGAGTTgatagaagaagaagaagaagaaataaaagAGGGAAATTACGATGATTCTGATTCTAACAGATCTGCGGACAGTAAGCAGGCACCGTCAGATGGTGAAGGCAGTTCATCATGGACAGATTCTCACTCTCTCACTGCAGATAAACCATCAAAGATGAAACGTGCAAAGCGTACGACACCTGCGGAAACACACATATGCACTGTGTGCAACAAGTTGTTCCGATACAAAGGCAACCTGGTGCAACACATGAGGACCCACACCAGAGAAAAACCCTACACCTGTCCGCATTGCTCGCACGCCTGCAGCAGCCAGAGCGCTATGAAAAGTCACATCAAAATTCACACCGGAGAGAAATCACACTCGTGCCCGTACTGTGAATACAGATGTATCACAAAATCAACAATGACAGTACACATCAGAAGGCATACCGGAGAACGCCCCTACATATGTACACAGTGTCACAAGAAATTCAAGACACTAGCAGATTTGACTCAGCACATGCATTGTCACACCGGGGAAAAACCGTTCGCTTGTCGATTGTGTGATTCTAAATTTTCAAGTCGAGGCAATCTGAGGACTCACATGTTCACCCACACTGGAGTGAGACCTTACGCATGCAAGATGTGTCCGGCCAAGTTTTCAATAAGAAAGAACCTAAAAGATCACGAGATGGTTCACAATGGAGAAAAACCGTTTCCGTGCACCTACTGCAATTATGCAGCGAGACGACAGGACCAGTTGAAGAACCACATGTTCGTGAAACACTTCCGTGACAAACGGTACACTTGTGACATCTGTCAGAAAGAGTATGCCACGAAGAACTCATACGTTAATCACTTAATGAAACATAATAGCAAAAAGAACTCGCATATAGTTGAGGatttttttaatagaaaaaatttaaaGGTGCACATGAAAAAACACACCGGCGACCAGCCCTTTACTTGTAGGGTTTGTAAGTTCAGATGTTCTGATCCGGATACCCTTGAATCTCACTCGAAGACTCACATCGGCGAAGACCCCCTCGCTTGCAAGGACTGTGGAAAGAAGTGTAACTCTAAGAGTCAGTTAAAACAGCACTTATACACTCACACGGGAGAAAAGCGATATTGTTGTGATTTGTGTGCGTTCGCGACTGCGCACAGAGGGCGCTTGATAACTCACATCATGACTCACACTGGCCAGAAACCCTACTCTTGTAACATCTGCGCTTATAAATGTGTGGCCAAAACCGGCGTACGAAGTCACATGAAAATTCACACCGGTGAAAAGAGTCATCCCTGTCCCGTTTGCCAAAAGAAATTTACAAAAGCGAGACTAAATTCACATATGAGAACACACGCGATAGAAAAACCGTTCACTTGTGATATTTGTCAAGCGAGTTTCGCGCAAAAAGCCGGTTTAACTATGCACAAGATCAGTCACACCATCGAGAAACGGTTCCCTTGTACGATGTGCGAGAGGAAATTCAGAACTGAACAAGCGCGAAAAAATCACGAAATCACtcacactggagagaaacccTACCAGTGTGATGTCTGCGATTCAAAGTTCAAACAGAAATCTGCATTAACCACGCATATGAGATGTCACACGGGTGAGAAACCATACTTGTGCCAAATTTGCAACACAAGGTTTGCACAGAAAAATGTGTTAACCGGACATATGAGGTCTCACACCGGAGAAAGACCGTTCTCGTGTGAAATCTGCCCGTTCACAACTGCACGTAGAGAAGGCCTGTTCTGGCACAAGAAAAAGCACACGGGCGAGAAACCTCACGCGTGCGAATTGTGCCACGCGAAATTCACGCTGAAGACGGGTCTGAAGCTGCACATGAAAACACACAGCAGCGAGAGGCAATTCTCTTGCGTGCAGTGTGAGTCGAAATTTAAGAACAAATCATCCTTAAGCGTGCATATGCTGATACACAGCGGAGTTAAAGAATTTTCGTGTAAACATTGCGACTTTAAATGCAGTACTAATATGAACCTGAAGTCACATATGCGCACTCACACTGGAGAAAAACCCTTTGCGTGTGACGTGTGTCCTTTCAAAACTGCACACAGCGGTCGTCTGGTGACGCATAAATTAATTCACACCGGGGAAAAGCCTCATTCGTGCGACCAGTGCAGCTTCAGCGCGCGGACCAGATCGGCTCTCAATAATCATTTACGCACGCACACTGGAGACAAACCGCACTATTGTAGCATATGCCACTCGAGCTTCATGCAGACCGACGGGTTGATTAAACACATGCGGACTCACACTGGCGAGCAACCGTTCCGCTGTCTCACATGCGACTTCAAGACAGCTCACAGAGATCGCTTGAGGACTCATATAATGACTCACACTGGGGAGAAACCTTTCGTTTGCGAGCATTGCAATCACAGATGCCGGACTAAATGCGCTTTACAGTCTCACGCTAAAGTTCATGATGGCGTGAAGCGGTTCCGATGCGACTTTTGTGATAGAAAATTTTTGAGACGGAAATCTCTGACCGACCACATTCGGACTCACACTGTAGAGAAGCCTTACGCTTGTGATCTGTGTGGGTTccagtgtgtgaagcctgccagcTTCAAAGCCCACCAAAAGACGCACACTGGAGGGGAATGCTTCACCTGCGATTTGTGTTCATTCACTACTCTGTACAAGAGACGTCTGGTCACTCACATTAAAACTCACACTGGAGATAAAACTGCCACTAGTGAGTAA
Protein Sequence
MEKETKELRILRVVLSKLKMQNLPTGDCSVVNSTDFEKFIAKITPKKDADGGYHRVKTELIEEEEEEIKEGNYDDSDSNRSADSKQAPSDGEGSSSWTDSHSLTADKPSKMKRAKRTTPAETHICTVCNKLFRYKGNLVQHMRTHTREKPYTCPHCSHACSSQSAMKSHIKIHTGEKSHSCPYCEYRCITKSTMTVHIRRHTGERPYICTQCHKKFKTLADLTQHMHCHTGEKPFACRLCDSKFSSRGNLRTHMFTHTGVRPYACKMCPAKFSIRKNLKDHEMVHNGEKPFPCTYCNYAARRQDQLKNHMFVKHFRDKRYTCDICQKEYATKNSYVNHLMKHNSKKNSHIVEDFFNRKNLKVHMKKHTGDQPFTCRVCKFRCSDPDTLESHSKTHIGEDPLACKDCGKKCNSKSQLKQHLYTHTGEKRYCCDLCAFATAHRGRLITHIMTHTGQKPYSCNICAYKCVAKTGVRSHMKIHTGEKSHPCPVCQKKFTKARLNSHMRTHAIEKPFTCDICQASFAQKAGLTMHKISHTIEKRFPCTMCERKFRTEQARKNHEITHTGEKPYQCDVCDSKFKQKSALTTHMRCHTGEKPYLCQICNTRFAQKNVLTGHMRSHTGERPFSCEICPFTTARREGLFWHKKKHTGEKPHACELCHAKFTLKTGLKLHMKTHSSERQFSCVQCESKFKNKSSLSVHMLIHSGVKEFSCKHCDFKCSTNMNLKSHMRTHTGEKPFACDVCPFKTAHSGRLVTHKLIHTGEKPHSCDQCSFSARTRSALNNHLRTHTGDKPHYCSICHSSFMQTDGLIKHMRTHTGEQPFRCLTCDFKTAHRDRLRTHIMTHTGEKPFVCEHCNHRCRTKCALQSHAKVHDGVKRFRCDFCDRKFLRRKSLTDHIRTHTVEKPYACDLCGFQCVKPASFKAHQKTHTGGECFTCDLCSFTTLYKRRLVTHIKTHTGDKTATSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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