Carc024683.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072080.1:2187953-2219638[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.68 50 5.5 0.4 1 23 519 541 519 541 0.96 2 27 2.5e-05 0.0019 19.4 3.2 1 23 559 581 559 581 0.98 3 27 0.0038 0.28 12.5 5.1 1 23 587 609 587 609 0.98 4 27 2.8e-06 0.00021 22.4 2.1 1 23 616 638 616 638 0.99 5 27 0.00029 0.021 16.1 0.1 1 23 644 666 644 666 0.93 6 27 4.6e-06 0.00034 21.7 0.0 1 23 672 694 672 694 0.98 7 27 4.8e-06 0.00036 21.7 2.1 1 23 700 723 700 723 0.96 8 27 0.21 16 7.1 1.5 1 13 729 741 729 744 0.91 9 27 1.2e-05 0.00088 20.4 2.4 1 23 774 797 774 797 0.96 10 27 0.21 16 7.1 1.5 1 13 803 815 803 818 0.91 11 27 1.2e-05 0.00088 20.4 2.4 1 23 848 871 848 871 0.96 12 27 0.21 16 7.1 1.5 1 13 877 889 877 892 0.91 13 27 4.8e-06 0.00036 21.7 2.1 1 23 922 945 922 945 0.96 14 27 0.21 16 7.1 1.5 1 13 951 963 951 966 0.91 15 27 4.8e-06 0.00036 21.7 2.1 1 23 996 1019 996 1019 0.96 16 27 0.21 16 7.1 1.5 1 13 1025 1037 1025 1040 0.91 17 27 4.8e-06 0.00036 21.7 2.1 1 23 1070 1093 1070 1093 0.96 18 27 0.76 56 5.3 1.0 1 13 1099 1111 1099 1114 0.91 19 27 4.8e-06 0.00036 21.7 2.1 1 23 1144 1167 1144 1167 0.96 20 27 0.21 16 7.1 1.5 1 13 1173 1185 1173 1188 0.91 21 27 4.8e-06 0.00036 21.7 2.1 1 23 1218 1241 1218 1241 0.96 22 27 0.21 16 7.1 1.5 1 13 1247 1259 1247 1262 0.91 23 27 4.8e-06 0.00036 21.7 2.1 1 23 1292 1315 1292 1315 0.96 24 27 0.002 0.15 13.4 3.7 1 23 1321 1344 1321 1344 0.95 25 27 0.00027 0.02 16.2 1.2 2 23 1351 1372 1350 1372 0.97 26 27 3.4e-05 0.0025 19.0 1.8 1 23 1378 1400 1378 1400 0.97 27 27 0.0043 0.32 12.4 0.5 1 23 1406 1430 1406 1430 0.91
Sequence Information
- Coding Sequence
- ATGCTGACCATGCTGGTGACCGAGATCGCAGATCATACTCTGGATCAGTTTTCTTGTGTCAAGGAGGAGCTATATGTTGGAACATTACCTTTGAAATCTGGCAAGAATATAACAACGATAATCGGTGAAATTGTTGAAAAGCCCATCGTCAAAGACACTGCACACTCTGAGGTACTGTGCAAGAAATGTCAGAAATCTGTTATGGAATATGACTCCCTGCTATTCAGATCTCAACAAATAAGAACAGATTTGAAAGAGAACTTCAAGAAAACTCTCACAGATCACAAACTAAGCTATGACACCTACAATGAGGAGCGTTCGAAAGTCGACATTCTTATCAAGAAAGAGACGAAAAAGCTGGTGTTGCCAGCTTCGAAACTACAGCCGTTGCCCGCTGATTTTGTGCTGACAACACCCGCGAAATTGGGGCTAGCCAAAGCTGCTACTGTGCCAATTCTtaagAATGTCATGACTTTACCGTCATCTTCGACTCTCAATCTCAAAGTCACAGTGGGCTCTTCAGTTCTAACGCAAAGCATTAACACCAACTCGGTGGCAAACAAGACGAAATTGGCACCAAGTCTCACCATAGACCCGAAACTAATTATGGCCTCGAAAGAAAGCGCCAAAACCGACCAAAATCTCACGAACACAACTTACATTACTACAAGCAGCGACCAAAAATTCGTTTCGACCAGTTTCACGACGAACACCGTCGATTCAAAGCCTTCGTCGGAGAATAGAAGTTCGATTTTGACGTTTAACGTCGAATCGCTGCCAAAGGATTTTCTTTCGTCGGCCATTTTGAAAGTGGACGCCGATTTTGATAAAGCTACGAGCGAAGAGGCGGAGAACGATTTGGAAAACAATGATGATCAATCTATGGAAATCGATGAAGATTGTACGATGGCAACCGTAACTCAAAGTCCTTTGAAGTTTGAAGATGGTAATATTATTAAGATGGATCAAGACAGCAAATCTGAAACAGAGTACTTAGATATGAAGTTACTCGGAGGCTCGGACGGACAGTATGTTTTGGGGAAACTGATCTTGCAGGATGACGATGGAGAAAATGATGGGGAAGATGAGGAACatACAATAGTGATGGACGGCGAGAAGGGATCGATAATCCGAGTGATGTCGGGGCAGAAGCTAGTGTACGGGGAAGATGGGAAGATCTCGCTAGTGCCTGATGATGACCCGGACACCCAGGATAATGCTGACAGCCAAGATTCAAACGACGAGTCGCAAATAGAGTTGCAAGTGTCGGGCGACGAGGAGACGGCCAACGCTATCATTGCCGCCGCGCAGGAGCAAGGTGGTGCATTTATAAAAGTGGAATCAGGCGAGATGTATCGAGTGGAATCGGTCGAGAGCAAAaccgacgacgacgacaactTGAAACTAGAAACACAGTCGGCGATGATTTTAAACGAAGACGGACAATTTCGGTGTCTCATGTGTGAAAGGAACGAGAATAAAGGGGAACCAATATACGTGGGTGATGCAGACTCCACTATGGACCACTTGAAAAGTTACCACGCTGCGAGATTGTATATATGCCGGGTTTGTGGACACATTGAGAGGAAGAGAAGCGACTTTGCTGTCCACATGGAGGAACACAACCCCAACTCCGGCTCTAAACAAATACACCCCGCGCTCAAAGCAAAGATACATCAGTGCCACATTTGTGAAAAAACGTATCAGTCGAAAGCGTTGCTAACGGCACATATGAACATGCACAGCGGCTCGCGGCCTTACTCTTGCAGCATCTGCAAGAAAACCTTCGCCTCCAAGTACACGCACCAGTCGCACCTCAAGACGCATCTCGACCGCCCGCGGCCATACAAATGCAGCAAATGCGACAAGTCGTTCTTCACGCCGCAGAACTTGATCCAGCACGAGAAAACACACTCCAATGTCAAGGACTTCGTTTGTAATATTTGTGGCAAGGCGTTCGGCGCACAACACAATCTGGAAGTCCACGGCGTAGTTCACTCGGGCAGCAAGCCGTTTGTGTGCGGAGTTTGCGGGAAGGCGTTCGCGAGAAGAGCCGAAGTGCGCGACCACATGAGGATACACACAGGCGAACGTCCCTTCAAATGCGACATTTGCGGCGCGAGCTTCACGCAGCGCTCGAACCTGCACTCCCACAAGCGCGCCACGCACCTCGACGACAAGCGGTACCACTGCACGCAGTGCCCCAAGAAGTTTAAACGGAGGCGCGCTCGAACCTGCACTCCCACAAGCGCGCCACGCACCTCGACGACAAGCGGTACCACTGCACGCAGTGCCCCAAGAAGTTTAAACGGAGGCGCCTTCAAATGCGACATTTGCGACGCGAGCTTCACGCAGCGCTCGAACCTGCACTCCCACAAGCGCGCCACGCACCTCGACGACAAGCGGTACCACTGCACGCAGTGCCCCAAGAAGTTTAAACGGAGGCGCGCTCGAACCTGCACTCCCACAAGCGCGCCACGCACCTCGACGACAAGCGGTACCACTGCACGCAGTGCCCCAAGAAGTTTAAACGGAGGCGCCTTCAAATGCGACATTTGCGACGCGAGCTTCACGCAGCGCTCGAACCTGCACTCCCACAAGCGCGCCACGCACCTCGACGACAAGCGGTACCACTGCACGCAGTGCCCCAAGAAGTTTAAACGGAGGCGCGCTCGAACCTGCACTCCCACAAGCGCGCCACGCACCTCGACGACAAGCGGTACCACTGCACGCAGTGCCCCAAGAAGTTTAAACGGAGGCGCCTTCAAATGCGACATTTGCGGCGCGAGCTTCACGCAGCGCTCGAACCTGCACTCCCACAAGCGCGCCACGCACCTCGACGACAAGCGGTACCACTGCACGCAGTGCCCCAAGAAGTTTAAACGGAGGCGCGCTCGAACCTGCACTCCCACAAGCGCGCCACGCACCTCGACGACAAGCGGTACCACTGCACGCAGTGCCCCAAGAAGTTTAAACGGAGGCGCCTTCAAATGCGACATTTGCGGCGCGAGCTTCACGCAGCGCTCGAACCTGCACTCCCACAAGCGCGCCACGCACCTCGACGACAAGCGGTACCACTGCACGCAGTGCCCCAAGAAGTTTAAACGGAGGCGCGCTCGAACCTGCACTCCCACAAGCGCGCCACGCACCTCGACGACAAGCGGTGTCACTGCACGCAGTGCCCCAAGAAGTTTAAACGGAGGCGCCTTCAAATGCGACATTTGCGGCGCGAGCTTCACGCAGCGCTCGAACCTGCACTCCCACAAGCGCGCCACGCACCTCGACGACAAGCGGTACCACTGCACGCAGTGCCCCGAGAAGTTTAAACGGAGGCGCGCTCGAACCTGCACTCCCACAAGCGCGCCACGCACCTCGACGACAAGCGGTACCACTGCACGCAGTGCCCCAAGAAGTTTAAACGGAGGCGCCTTCAAATGCGACATTTGCGGCGCGAGCTTCACGCAGCGCTCGAACCTGCACTCCCACAAGCGCGCCACGCACCTCGACGACAAGCGGTACCACTGCACGCAGTGCCCCAAGAAGTTTAAACGGAGGCGCGCTCGAACCTGCACTCCCACAAGCGCGCCACGCACCTCGACGACAAGCGGTACCACTGCACGCAGTGCCCCAAGAAGTTTAAACGGAGGCGCCTTCAAATGCGACATTTGCGGCGCGAGCTTCACGCAGCGCTCGAACCTGCACTCCCACAAGCGCGCCACGCACCTCGACGACAAGCGGTACCACTGCACGCAGTGCCCCAAGAAGTTTAAACGGAGGCGCGCTCGAACCTGCACTCCCACAAGCGCGCCACGCACCTCGACGACAAGCGGTACCACTGCACGCAGTGCCCCAAGAAGTTTAAACGGAGGCGCCTTCAAATGCGACATTTGCGGCGCGAGCTTCACGCAGCGCTCGAACCTGCACTCCCACAAGCGCGCCACGCACCTCGACGACAAGCGGTACCACTGCACGCAGTGCCCCAAGAAGTTTAAACGGAGGCGGTTGCTCGACTACCACATAAAGGCGTCTCACACTGGCGAGCGGCCACTAGTGTGCGAAATCTGTCACGCGACGTTCGTGTACCCGGAGCATTACAAGAAACATGCGCGCATCCACAGTGGAGAGAAACCTTATAAATGCGAGGTGTGCGGAAAGTCGTTCAACTCCCGCGACAACCGCAACACGCACCGCTTCGTGCACAGCGACCGCAAGCCGTACGAGTGCGTCGTGTGCGGCACCGGGTACATGCGGAAACAGCTGCTCTACCACCACATGAACATCAGCgGTCATTTGGCTGAATCGATAGTGGTGAATCAACCGCGGGTCACGAAACTTGGTGACAGTATATACACAATACAAGAAAATGAGTCGTCTCAAGATTTGCCTCAAGAGAGTGAGAGCGGACAAAACGGTATCAGCTTAGTGGAGGACAACGGTGACCCCACCCTCCTCACACTGCATAATGTGGACGGCGACATAAAGAGCGACGGAACCATGATAGACGTGCCCGTAGAAGACCAGTCTAATATCCGGCTGGTACCTGTCGAGTTGGAGGACGGCAGCAGTGGATGGGTGGCCATTAAAGCTTAG
- Protein Sequence
- MLTMLVTEIADHTLDQFSCVKEELYVGTLPLKSGKNITTIIGEIVEKPIVKDTAHSEVLCKKCQKSVMEYDSLLFRSQQIRTDLKENFKKTLTDHKLSYDTYNEERSKVDILIKKETKKLVLPASKLQPLPADFVLTTPAKLGLAKAATVPILKNVMTLPSSSTLNLKVTVGSSVLTQSINTNSVANKTKLAPSLTIDPKLIMASKESAKTDQNLTNTTYITTSSDQKFVSTSFTTNTVDSKPSSENRSSILTFNVESLPKDFLSSAILKVDADFDKATSEEAENDLENNDDQSMEIDEDCTMATVTQSPLKFEDGNIIKMDQDSKSETEYLDMKLLGGSDGQYVLGKLILQDDDGENDGEDEEHTIVMDGEKGSIIRVMSGQKLVYGEDGKISLVPDDDPDTQDNADSQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVESVESKTDDDDNLKLETQSAMILNEDGQFRCLMCERNENKGEPIYVGDADSTMDHLKSYHAARLYICRVCGHIERKRSDFAVHMEEHNPNSGSKQIHPALKAKIHQCHICEKTYQSKALLTAHMNMHSGSRPYSCSICKKTFASKYTHQSHLKTHLDRPRPYKCSKCDKSFFTPQNLIQHEKTHSNVKDFVCNICGKAFGAQHNLEVHGVVHSGSKPFVCGVCGKAFARRAEVRDHMRIHTGERPFKCDICGASFTQRSNLHSHKRATHLDDKRYHCTQCPKKFKRRRARTCTPTSAPRTSTTSGTTARSAPRSLNGGAFKCDICDASFTQRSNLHSHKRATHLDDKRYHCTQCPKKFKRRRARTCTPTSAPRTSTTSGTTARSAPRSLNGGAFKCDICDASFTQRSNLHSHKRATHLDDKRYHCTQCPKKFKRRRARTCTPTSAPRTSTTSGTTARSAPRSLNGGAFKCDICGASFTQRSNLHSHKRATHLDDKRYHCTQCPKKFKRRRARTCTPTSAPRTSTTSGTTARSAPRSLNGGAFKCDICGASFTQRSNLHSHKRATHLDDKRYHCTQCPKKFKRRRARTCTPTSAPRTSTTSGVTARSAPRSLNGGAFKCDICGASFTQRSNLHSHKRATHLDDKRYHCTQCPEKFKRRRARTCTPTSAPRTSTTSGTTARSAPRSLNGGAFKCDICGASFTQRSNLHSHKRATHLDDKRYHCTQCPKKFKRRRARTCTPTSAPRTSTTSGTTARSAPRSLNGGAFKCDICGASFTQRSNLHSHKRATHLDDKRYHCTQCPKKFKRRRARTCTPTSAPRTSTTSGTTARSAPRSLNGGAFKCDICGASFTQRSNLHSHKRATHLDDKRYHCTQCPKKFKRRRLLDYHIKASHTGERPLVCEICHATFVYPEHYKKHARIHSGEKPYKCEVCGKSFNSRDNRNTHRFVHSDRKPYECVVCGTGYMRKQLLYHHMNISGHLAESIVVNQPRVTKLGDSIYTIQENESSQDLPQESESGQNGISLVEDNGDPTLLTLHNVDGDIKSDGTMIDVPVEDQSNIRLVPVELEDGSSGWVAIKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -