Carc025757.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072081.1:7339841-7354889[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 0.0096 0.71 11.3 1.3 1 23 455 477 455 477 0.98 2 32 0.013 0.98 10.8 2.7 1 23 484 507 484 507 0.97 3 32 0.86 64 5.1 3.8 1 23 511 533 511 533 0.98 4 32 0.0019 0.14 13.5 1.8 2 23 539 561 538 561 0.97 5 32 0.028 2.1 9.8 0.1 2 23 566 588 565 588 0.95 6 32 0.028 2.1 9.8 0.1 2 23 595 617 594 617 0.95 7 32 0.028 2.1 9.8 0.1 2 23 624 646 623 646 0.95 8 32 0.028 2.1 9.8 0.1 2 23 653 675 652 675 0.95 9 32 0.028 2.1 9.8 0.1 2 23 682 704 681 704 0.95 10 32 0.028 2.1 9.8 0.1 2 23 765 787 764 787 0.95 11 32 1.5 1.1e+02 4.4 0.0 2 22 800 820 800 824 0.90 12 32 2.7 2e+02 3.6 3.1 2 23 853 874 852 875 0.94 13 32 0.0021 0.16 13.4 1.8 3 23 892 912 890 912 0.97 14 32 3.9e-05 0.0029 18.8 3.0 2 23 919 940 918 940 0.97 15 32 0.0013 0.097 14.0 0.5 1 20 947 966 947 966 0.95 16 32 0.00033 0.025 15.9 3.8 3 23 968 988 968 988 0.99 17 32 0.0013 0.097 14.0 0.5 1 20 995 1014 995 1014 0.95 18 32 0.00033 0.025 15.9 3.8 3 23 1016 1036 1016 1036 0.99 19 32 0.0013 0.097 14.0 0.5 1 20 1043 1062 1043 1062 0.95 20 32 0.00033 0.025 15.9 3.8 3 23 1064 1084 1064 1084 0.99 21 32 0.0013 0.097 14.0 0.5 1 20 1091 1110 1091 1110 0.95 22 32 0.00033 0.025 15.9 3.8 3 23 1112 1132 1112 1132 0.99 23 32 0.0013 0.097 14.0 0.5 1 20 1139 1158 1139 1158 0.95 24 32 0.00033 0.025 15.9 3.8 3 23 1160 1180 1160 1180 0.99 25 32 0.0013 0.097 14.0 0.5 1 20 1187 1206 1187 1206 0.95 26 32 0.00033 0.025 15.9 3.8 3 23 1208 1228 1208 1228 0.99 27 32 0.0013 0.097 14.0 0.5 1 20 1235 1254 1235 1254 0.95 28 32 0.00033 0.025 15.9 3.8 3 23 1256 1276 1256 1276 0.99 29 32 0.0013 0.097 14.0 0.5 1 20 1283 1302 1283 1302 0.95 30 32 0.00033 0.025 15.9 3.8 3 23 1304 1324 1304 1324 0.99 31 32 0.00086 0.064 14.6 0.9 1 20 1331 1350 1331 1353 0.91 32 32 0.0053 0.39 12.1 2.3 1 23 1360 1383 1360 1383 0.95
Sequence Information
- Coding Sequence
- ATGAGGTGTTGCGTGCCGTTTTGTGtaaataattcagaaataatgcCCGACCCGCAAAATGTTACTTTTCATAGGTTGCCCACTGAAGCCTTCCGGCACGCGGCCTGGCTCGAAGCTCTGGGCATCCAAAAGGAAAATGAGTCCCACAAAGTTCTGTTCGTTTGCTCTCTGCATTTCAAAGAATCAGACTTCTACACCACCAAAGGAGGGCAACGAGCGGTTCAGAGGAGTGGGGTACCAAAAACTGAACAGGTGTGCATTATATGCCTGGACACTGACAGAAAACTTTACTCCCTGACCTATTTCAATTTGGATGGAGCTTATGAGAAGATAACTGGGATTTCTCTGAAAACATTCAAGATCATCCTATCACCGAAAGTTTGCTCGGAATGTGGCCAACGATTGATCAACTTCAACAAGTTCAGAGATAAGAGCTTGCGAGCAAACAAACTGTTGCTCGACCTGAGCAGGAGAGATGATCTGCTAAGGATACAGaacataaaatcaataaacaGAAAGAAACATAAACTAAAATCAAATCtaacaaaaattatattcaaacCAAACTGTTATGACTTCACTTTGGTATGGAATGAAGACAATAACGTTAAATTAGAGAAAAGAGATAGAATGAACGTTAAAACGGAGAACAGAgaaaataaggacaaaaatatTAAGATAGAGAATATAGTCTATGGTTCGGCTGAAGTGAAAAATGAGCTGTCAAAAGTGACAGTTGTTGTGGCGCCAAAAGAGGAAGGTTCAAATGACATTCCCAGTGATGAAGAGTTCTTACATGATGACATAGACAATgataactttttaaatggcGAGATTGGAAAGGTCATAAAGAATGCCAGAGTCACCGCAGACCCTACAAACATAAATGACGTTTACAAAACAGTCAAACTTTTCAAACAGGGCGTAGAAATCGACGTGGAATTTTCCAGGGAGGACGTCACAAACTTCAACACGGATATCCCAGTCAGAAATGACagtcagaatgtcaataatgaCATTTACCCGCTAAATGATGACATAGACCTCGACTTCATGGATGACAATGACATGGGCTTAGATTACACGGGTGACAATGGAAGTGACATTGAGTTTGTTGCCCAAGCCCCTGTCGAGGCGTGTAAGAAATCTGTCAAGAGGAGAAAGAAAAGTGTCAACAAAAATGTCATGGAAGCAAAAGTAGTCAAAACCAGGAAACGGAAGAAACCACTTCAGGGTCGGTATCTGAAGAGAAAGACGCCAACTGGTGACATGGAGTTGTTTAAAGTGACGGTTTTGACGTATGAGGAACAGGTGGCAGACATTCAGTGCAAGAAAGACACCCCACTGTACAAAAACTCAACGTACAAATGCACGTACTGCTTCAAAGGATACCAGTACGAGGATGCGTACGAGTCGCACATGGAGCAGCACACGGACAAATACGGCGTGTTCGAGTGCGCGATCTGCGGCATCCACACCAAGAGTCGACAGAAGCTGTTGCATCATCTCAACATGACCCACATCGTTAGATACACGTGCACCAAATGCCCGTTCTTCACGAGGCATAGGAACACGGCCAAGTCGCACGCGCGCTGGCACAACGGAATCAAGTCCAAATGCAAATACTGTGACGCGGAGTTCAGTAAAATGACGTCACTGCTGTCTCACCTGCGCAAGAAGCACCCGTCCGACCAGGTGTGCACCCTGTGCGGGTACTCCTTCATCGGCGAGAGGGGGCTCGCGTTGCACGTGCAGAAGAAACACCAGTTTGACGACCTGCAGGTGTGCACCCTGTGCGGGTACTCCTTCATCGGCGAGAGGGGGCTCGCGTTGCACGTGCAGAAGAAACACCAGTTTGACGACCTGCAGGTGTGCACCCTGTGCGGGTACTCCTTCATCGGCGAGAGGGGGCTCGCGTTGCACGTGCAGAAGAAACACCAGTTTGACGACCTGCAGGTGTGCACCCTGTGCGGGTACTCCTTCATCGGCGAGAGGGGGCTCGCGTTGCACGTGCAGAAGAAACACCAGTTTGACGACCTGCAGGTGTGCACCCTGTGCGGGTACTCCTTCATCGGCGAGAGGGGGCTCGCGTTGCACGTGCAGAAGAAACACCAGTTTGACGACCTGCAGGTGAGCGTGCGGCGGTCGCGGTCACAGCGCAGTGACGTCACTGCTGTCTCACCTGCGCAAGAAGCACCCGTCCGACCAGGTGTGCACCCTGTGCGGGTACTCCTTCATCGCGCAGTGACGTCACTGCTGTCTCACCTGCGCAAGAAGCACCCGTCCGACCAGGTGTGCACCCTGTGCGGGTACTCCTTCATCGGCGAGAGGGGGCTCGCGTTGCACGTGCAGAAGAAACACCAGTTTGACGACCTGCAGGTAGAGCCCGCGGGCCCCACGTGCGCAGCGTGCGGAATACGCTTCGCGAACGACGCTGCGTACGAGCAGCACGTGCGCGTCTCGCCCAAACACGCCGCGCCCGATGCCCTTGAGCCCAACGAGCCGCGGTGGCACAAACCCAAAGGTCCGCCGCGACGCAAGGGCGACCAGATGGTCACGTGCGAGCAGTGCGGCATGACTCTGAAAGGGTTCAAGTACTACACGTACCACTTCAAGAGACACCACCGCGACAAGATACGCACGCAGTTCGCCAACGCGCACGAGCGGTGTCTGTGCGAGCTCTGCGGACGGGTTCTGCAGCACTCGAGCGCCCTCAAAAGCCACATGCTCGTCCACACGGGCACGAAGGACGTGCAGTGTTCCGTGTGCGACAAGCGCTTCTACCACCGGCGGCAGCTGACCATGCACATGGACACCCACAACGAGGCCAAGCGCACCTTCGACTGCCCCGTGTGCGCGCGCAGCTTCACCAGCAAGTCCAACAAGAACAGGCACTTGTGGTGTTCCGTGTGCGACAAGCGCTTCTACCACCGGCGGCAGCTGACCATGCACATGGACACCCACAACGAGGCCAAGCGCACCTTCGACTGCCCCGTGTGCGCGCGCAGCTTCACCAGCAAGTCCAACAAGAACAGGCACTTGTGGTGTTCCGTGTGCGACAAGCGCTTCTACCACCGGCGGCAGCTGACCATGCACATGGACACCCACAACGAGGCCAAGCGCACCTTCGACTGCCCCGTGTGCGCGCGCAGCTTCACCAGCAAGTCCAACAAGAACAGGCACTTGTGGTGTTCCGTGTGCGACAAGCGCTTCTACCACCGGCGGCAGCTGACCATGCACATGGACACCCACAACGAGGCCAAGCGCACCTTCGACTGCCCCGTGTGCGCGCGCAGCTTCACCAGCAAGTCCAACAAGAACAGGCACTTGTGGTGTTCCGTGTGCGACAAGCGCTTCTACCACCGGCGGCAGCTGACCATGCACATGGACACCCACAACGAGGCCAAGCGCACCTTCGACTGCCCCGTGTGCGCGCGCAGCTTCACCAGCAAGTCCAACAAGAACAGGCACTTGTGGTGTTCCGTGTGCGACAAGCGCTTCTACCACCGGCGGCAGCTGACCATGCACATGGACACCCACAACGAGGCCAAGCGCACCTTCGACTGCCCCGTGTGCGCGCGCAGCTTCACCAGCAAGTCCAACAAGAACAGGCACTTGTGGTGTTCCGTGTGCGACAAGCGCTTCTACCACCGGCGGCAGCTGACCATGCACATGGACACCCACAACGAGGCCAAGCGCACCTTCGACTGCCCCGTGTGCGCGCGCAGCTTCACCAGCAAGTCCAACAAGAACAGGCACTTGTGGTGTTCCGTGTGCGACAAGCGCTTCTACCACCGGCGGCAGCTGACCATGCACATGGACACCCACAACGAGGCCAAGCGCACCTTCGACTGCCCCGTGTGCGCGCGCAGCTTCACCAGCAAGTCCAACAAGAACAGGCACTTGTGGTGTTCCGTGTGCGACAAGCGCTTCTACCACCGGCGGCAGCTGACCATGCACATGGACACCCACAACGAGGCCAAGCGCACCTTCGACTGCCCCGTGTGCGCGCGCAGCTTCACCAGCAAGTCCAACAAGAACAGGCACTTGTGGaccCACACTCAAGTCTCGCGTCCATTCAAATGCCACGCGTGCCCGAAGACCTTCGTGTACCCGTCCGAGAGGAAGATCCACGTGAACCACGCGCACGCCAACCAGCCCTACCCCAAGAAGAGCAAGACGAGGGTGCGGAGCAGCCGCCCCCGCCACACCCGGGAGGCTGCGTACCAGATGAGATCGCACGACGGGATCCATATGAACCCCATGGAGATGTGTGCGGACGCGTCTTATGGCAGCGAGGCTAGTGCCGTGCTCAATGAGTGA
- Protein Sequence
- MRCCVPFCVNNSEIMPDPQNVTFHRLPTEAFRHAAWLEALGIQKENESHKVLFVCSLHFKESDFYTTKGGQRAVQRSGVPKTEQVCIICLDTDRKLYSLTYFNLDGAYEKITGISLKTFKIILSPKVCSECGQRLINFNKFRDKSLRANKLLLDLSRRDDLLRIQNIKSINRKKHKLKSNLTKIIFKPNCYDFTLVWNEDNNVKLEKRDRMNVKTENRENKDKNIKIENIVYGSAEVKNELSKVTVVVAPKEEGSNDIPSDEEFLHDDIDNDNFLNGEIGKVIKNARVTADPTNINDVYKTVKLFKQGVEIDVEFSREDVTNFNTDIPVRNDSQNVNNDIYPLNDDIDLDFMDDNDMGLDYTGDNGSDIEFVAQAPVEACKKSVKRRKKSVNKNVMEAKVVKTRKRKKPLQGRYLKRKTPTGDMELFKVTVLTYEEQVADIQCKKDTPLYKNSTYKCTYCFKGYQYEDAYESHMEQHTDKYGVFECAICGIHTKSRQKLLHHLNMTHIVRYTCTKCPFFTRHRNTAKSHARWHNGIKSKCKYCDAEFSKMTSLLSHLRKKHPSDQVCTLCGYSFIGERGLALHVQKKHQFDDLQVCTLCGYSFIGERGLALHVQKKHQFDDLQVCTLCGYSFIGERGLALHVQKKHQFDDLQVCTLCGYSFIGERGLALHVQKKHQFDDLQVCTLCGYSFIGERGLALHVQKKHQFDDLQVSVRRSRSQRSDVTAVSPAQEAPVRPGVHPVRVLLHRAVTSLLSHLRKKHPSDQVCTLCGYSFIGERGLALHVQKKHQFDDLQVEPAGPTCAACGIRFANDAAYEQHVRVSPKHAAPDALEPNEPRWHKPKGPPRRKGDQMVTCEQCGMTLKGFKYYTYHFKRHHRDKIRTQFANAHERCLCELCGRVLQHSSALKSHMLVHTGTKDVQCSVCDKRFYHRRQLTMHMDTHNEAKRTFDCPVCARSFTSKSNKNRHLWCSVCDKRFYHRRQLTMHMDTHNEAKRTFDCPVCARSFTSKSNKNRHLWCSVCDKRFYHRRQLTMHMDTHNEAKRTFDCPVCARSFTSKSNKNRHLWCSVCDKRFYHRRQLTMHMDTHNEAKRTFDCPVCARSFTSKSNKNRHLWCSVCDKRFYHRRQLTMHMDTHNEAKRTFDCPVCARSFTSKSNKNRHLWCSVCDKRFYHRRQLTMHMDTHNEAKRTFDCPVCARSFTSKSNKNRHLWCSVCDKRFYHRRQLTMHMDTHNEAKRTFDCPVCARSFTSKSNKNRHLWCSVCDKRFYHRRQLTMHMDTHNEAKRTFDCPVCARSFTSKSNKNRHLWCSVCDKRFYHRRQLTMHMDTHNEAKRTFDCPVCARSFTSKSNKNRHLWTHTQVSRPFKCHACPKTFVYPSERKIHVNHAHANQPYPKKSKTRVRSSRPRHTREAAYQMRSHDGIHMNPMEMCADASYGSEASAVLNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -