Carc028165.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- BLTP1_1
- Assembly
- GCA_036785405.1
- Location
- JAWDAA010000031.1:1-17083[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 40 0.088 6.5 8.3 1.5 8 23 188 203 188 203 0.96 2 40 0.00071 0.053 14.8 0.3 1 21 208 228 208 229 0.96 3 40 0.00071 0.053 14.8 0.3 1 21 243 263 243 264 0.96 4 40 0.00071 0.053 14.8 0.3 1 21 278 298 278 299 0.96 5 40 0.00071 0.053 14.8 0.3 1 21 313 333 313 334 0.96 6 40 0.00071 0.053 14.8 0.3 1 21 348 368 348 369 0.96 7 40 0.00071 0.053 14.8 0.3 1 21 383 403 383 404 0.96 8 40 0.00071 0.053 14.8 0.3 1 21 418 438 418 439 0.96 9 40 0.00071 0.053 14.8 0.3 1 21 453 473 453 474 0.96 10 40 0.00071 0.053 14.8 0.3 1 21 488 508 488 509 0.96 11 40 0.00071 0.053 14.8 0.3 1 21 523 543 523 544 0.96 12 40 0.00071 0.053 14.8 0.3 1 21 558 578 558 579 0.96 13 40 0.00071 0.053 14.8 0.3 1 21 593 613 593 614 0.96 14 40 0.00071 0.053 14.8 0.3 1 21 628 648 628 649 0.96 15 40 0.00071 0.053 14.8 0.3 1 21 663 683 663 684 0.96 16 40 0.00071 0.053 14.8 0.3 1 21 698 718 698 719 0.96 17 40 0.00071 0.053 14.8 0.3 1 21 733 753 733 754 0.96 18 40 0.00071 0.053 14.8 0.3 1 21 768 788 768 789 0.96 19 40 0.00071 0.053 14.8 0.3 1 21 803 823 803 824 0.96 20 40 0.00071 0.053 14.8 0.3 1 21 838 858 838 859 0.96 21 40 0.00071 0.053 14.8 0.3 1 21 873 893 873 894 0.96 22 40 0.0012 0.085 14.2 0.4 1 20 908 927 908 928 0.97 23 40 1e-05 0.00076 20.6 2.9 2 23 928 949 928 949 0.97 24 40 0.00071 0.053 14.8 0.3 1 21 954 974 954 975 0.96 25 40 0.00071 0.053 14.8 0.3 1 21 989 1009 989 1010 0.96 26 40 0.003 0.22 12.9 0.4 1 21 1024 1044 1024 1045 0.96 27 40 0.0012 0.085 14.2 0.4 1 20 1059 1078 1059 1079 0.97 28 40 1e-05 0.00076 20.6 2.9 2 23 1079 1100 1079 1100 0.97 29 40 0.00071 0.053 14.8 0.3 1 21 1105 1125 1105 1126 0.96 30 40 0.00071 0.053 14.8 0.3 1 21 1140 1160 1140 1161 0.96 31 40 0.003 0.22 12.9 0.4 1 21 1175 1195 1175 1196 0.96 32 40 0.00071 0.053 14.8 0.3 1 21 1210 1230 1210 1231 0.96 33 40 0.003 0.22 12.9 0.4 1 21 1245 1265 1245 1266 0.96 34 40 0.00071 0.053 14.8 0.3 1 21 1280 1300 1280 1301 0.96 35 40 0.00071 0.053 14.8 0.3 1 21 1315 1335 1315 1336 0.96 36 40 0.0012 0.085 14.2 0.4 1 20 1350 1369 1350 1370 0.97 37 40 8.2e-06 0.00061 20.9 3.5 2 23 1370 1391 1370 1391 0.97 38 40 0.00071 0.053 14.8 0.3 1 21 1396 1416 1396 1417 0.96 39 40 6.3e-05 0.0047 18.1 1.6 1 23 1431 1453 1431 1453 0.99 40 40 6.1e-05 0.0045 18.2 0.9 1 23 1462 1485 1462 1485 0.95
Sequence Information
- Coding Sequence
- ccctgctggaacGAGAAGCGCATGAGCCTCACCGAGGAGGTGCTCACCGCCACGCAGCAGGTCTTCGAAAAGGTGCAACTCTCATCAAATATATCGCCACCCCATCTCAGCACTAGGGTTGCCAGACGCACGCTGTTCCTGCAACTGAACGTCGATGATATTGGTATTTGTTTGCCTCAACCAGCCGCCTTTGACGACAAGGCCGCGGCTACGAGCTGGATCCGGGGCGCGGTGGTCGTGACCTTGGAAAGCACCAGCATTTCCGCGTGCAGTTCCGGTTCGCTGGTCAGCAAGGGCCGGTTCGTGGGCCTCTGCCTGCGGTCCGCCGATGACTTCGAGGCATCTCTGGACGATTGGAAGCCGGACCCCGGCGAAGCGTGCATCAATGTTTGCTGTGTCTCTGAAGGGACGTACGAAGTTTGCAGTCGGACTACTGCGGCGAAACATAATGaaaacGCAAAATGGTTCCTGAATGTGTCGTGGCAGATGGAGGGCGTTGACATACACCTTGACGTGAACGTTGGGAAACAACTATCAGCGTTGGGACACACCCTCACAATcaagatgttccgctacaaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctatcagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctatcagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggagGTGACGCTCAAGCGGCACATGCGCCTGCACAGCAACTCCAGCTAccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggagtGCCACATATGCAGCAAGATATTCCGCTACAAGGTGACGCTCAAGCGGCACATGCGCCTGCACAGCAACTCCAGCTAccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctgaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctgaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggctacttgaacaggcacatggaggtgacgctgaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggagtGCCACATATGCAGCAAGATATTCCGCTACAAGGTGACGCTCAAGCGGCACATGCGCCTGCACAGCAACTCCAGCTAccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctgaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggctacttgaacaggcacatggaggtgacgctgaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacGAGACCACCACCAAAGGCAACTTGAACAGGCACATGGAGgtgacgctcaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggctacttgaacaggcacatggaggtgacgctgaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctcaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggagtGCCACATATGCAGCAAGATGTTCCGCTACAAGGTGACGCTCAAGCGGCACATGCGCCTGCACAGCAACTGCAGCTAccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggaggtgacgctgaagcggcacatgcgcctgcacagcaactccagctaccagtgcgcgcactgcgcctacgagaccaccaccaagggcaacttgaacaggcacatggagacccatctcaaCCTTCACGAAAGGAAGCTTTACGATTGTAAGGAGTGCGGCAAAACGTTCACGTCGGTTGTGGCGATGAAGAACCACATGCTGCACGTGCACTTCAAGGTGCCCTACCCCAAGAGAGACCGCCCCTCGAGGCCGCGCGCGCACGCCTCGCACGCGCACACCGCAGACTACAGGCTGTAG
- Protein Sequence
- PCWNEKRMSLTEEVLTATQQVFEKVQLSSNISPPHLSTRVARRTLFLQLNVDDIGICLPQPAAFDDKAAATSWIRGAVVVTLESTSISACSSGSLVSKGRFVGLCLRSADDFEASLDDWKPDPGEACINVCCVSEGTYEVCSRTTAAKHNENAKWFLNVSWQMEGVDIHLDVNVGKQLSALGHTLTIKMFRYKVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMECHICSKIFRYKVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGYLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMECHICSKIFRYKVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGYLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGYLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMECHICSKMFRYKVTLKRHMRLHSNCSYQCAHCAYETTTKGNLNRHMEVTLKRHMRLHSNSSYQCAHCAYETTTKGNLNRHMETHLNLHERKLYDCKECGKTFTSVVAMKNHMLHVHFKVPYPKRDRPSRPRAHASHAHTADYRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -