Carc000564.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072055.1:10053577-10069666[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 44 0.073 5.4 8.5 0.0 2 23 197 219 196 219 0.93 2 44 0.14 10 7.6 5.4 1 19 279 297 279 302 0.96 3 44 3.7 2.7e+02 3.2 0.4 6 23 312 329 310 329 0.95 4 44 0.11 8.3 7.9 1.7 3 23 337 357 335 357 0.96 5 44 0.00022 0.016 16.5 3.3 1 23 365 387 365 387 0.97 6 44 0.00026 0.019 16.2 0.4 1 23 396 419 396 419 0.97 7 44 0.0012 0.086 14.2 0.2 1 23 425 447 425 447 0.97 8 44 8.6e-06 0.00064 20.9 2.4 1 23 453 475 453 475 0.98 9 44 0.0058 0.43 12.0 0.7 1 23 480 502 480 502 0.97 10 44 1.5e-05 0.0011 20.1 4.2 1 23 508 530 508 530 0.97 11 44 0.00071 0.052 14.9 2.9 2 23 537 559 536 559 0.95 12 44 0.021 1.6 10.2 0.6 5 23 581 600 580 600 0.94 13 44 0.021 1.6 10.2 0.6 5 23 622 641 621 641 0.94 14 44 0.021 1.6 10.2 0.6 5 23 663 682 662 682 0.94 15 44 0.021 1.6 10.2 0.6 5 23 704 723 703 723 0.94 16 44 0.021 1.6 10.2 0.6 5 23 745 764 744 764 0.94 17 44 0.021 1.6 10.2 0.6 5 23 786 805 785 805 0.94 18 44 0.021 1.6 10.2 0.6 5 23 827 846 826 846 0.94 19 44 0.021 1.6 10.2 0.6 5 23 868 887 867 887 0.94 20 44 0.021 1.6 10.2 0.6 5 23 909 928 908 928 0.94 21 44 0.021 1.6 10.2 0.6 5 23 950 969 949 969 0.94 22 44 0.021 1.6 10.2 0.6 5 23 991 1010 990 1010 0.94 23 44 0.021 1.6 10.2 0.6 5 23 1073 1092 1072 1092 0.94 24 44 0.021 1.6 10.2 0.6 5 23 1114 1133 1113 1133 0.94 25 44 0.021 1.6 10.2 0.6 5 23 1155 1174 1154 1174 0.94 26 44 0.021 1.6 10.2 0.6 5 23 1196 1215 1195 1215 0.94 27 44 0.021 1.6 10.2 0.6 5 23 1237 1256 1236 1256 0.94 28 44 0.021 1.6 10.2 0.6 5 23 1278 1297 1277 1297 0.94 29 44 0.021 1.6 10.2 0.6 5 23 1319 1338 1318 1338 0.94 30 44 0.021 1.6 10.2 0.6 5 23 1360 1379 1359 1379 0.94 31 44 0.021 1.6 10.2 0.6 5 23 1401 1420 1400 1420 0.94 32 44 0.021 1.6 10.2 0.6 5 23 1442 1461 1441 1461 0.94 33 44 0.021 1.6 10.2 0.6 5 23 1483 1502 1482 1502 0.94 34 44 0.021 1.6 10.2 0.6 5 23 1524 1543 1523 1543 0.94 35 44 0.021 1.6 10.2 0.6 5 23 1565 1584 1564 1584 0.94 36 44 0.021 1.6 10.2 0.6 5 23 1606 1625 1605 1625 0.94 37 44 0.021 1.6 10.2 0.6 5 23 1647 1666 1646 1666 0.94 38 44 0.021 1.6 10.2 0.6 5 23 1688 1707 1687 1707 0.94 39 44 0.021 1.6 10.2 0.6 5 23 1729 1748 1728 1748 0.94 40 44 0.021 1.6 10.2 0.6 5 23 1770 1789 1769 1789 0.94 41 44 0.021 1.6 10.2 0.6 5 23 1811 1830 1810 1830 0.94 42 44 0.021 1.6 10.2 0.6 5 23 1852 1871 1851 1871 0.94 43 44 0.021 1.6 10.2 0.6 5 23 1893 1912 1892 1912 0.94 44 44 0.021 1.6 10.2 0.6 5 23 1934 1953 1933 1953 0.94
Sequence Information
- Coding Sequence
- ATGGCTCAGAATGTAAAGGATTTGTGTCGACTTTGTGCTAAAGGCGAAGGGCTTACCAAAGATTTGATAGATGACAACAATAAGAATATTCTCAAAATGATACAGGAATATGTACATATTACCGTGAATGAAAGCGATGATTTACCTACTAAGCTGTGTCTAAATTGTGAAGAGAAAGTGGTAACATTCCAATTATTTGTGTTAGAATGTCTGAAAGCTCAGGAAACGCTAAAGAAGATGTGTGTAGGGCCATACATGACATGCCCAATAAAGTACGAAGATGGCATAGAATTTGGGCTTCCACCCATCAAATCCGAGGTTAAAGTTGAAATGATGCCAGAGGAATTAGTCAACGTTATCAACAATGAAGAACCTTTTGAAGAAGATTTAGATGCCGACAATTACATCAGCAACAGTGACACGAAACTGGACAGTGACGGTGATCTTAGTGACTCAATGACATTAGCAACACTTAAgaaaacaaaagtaaaaaagatcaaaagaaaacaaattactgaagaagaaaaaattgaatttaggaATATATTGAAGAAATCTAATTTGAATGTTAAGGATTTTGTGAAATTAGAGTGTAATATGTGCGAAGAACCAATGTCCACATGGAGTGCTctaagagtccattatgttAAAGTACACAAAAGCAAGCCAATGGTGTTCTGTCTGTGCGGCTTTGTCATCAGATCCAAAAGTGTTCTTTACAAACACGTATCGGATCATAGAATAGAAAGccgcaaatttaaaaagaatgaCTCTGATTCTGAGAAAAATGAAGAGTCAAAATATGCAAGTTTAAATGTCAATGATTTTGTTAACTTTACATGCCAATTCTGTCAGAAGGAGTGCAAGAGTTGGTACAGTTTGAAGGCGCATTGTGAAGACATGCATAATACTGTGCCAGTGGTTCGCTGCAGCTGTGGCATCACGCTGAAATCCAAGTCTGTTCTATACAAACATGTGCAGGATCACAAAAACCCCAACGTCATCTGttgCGATAAGTGTCCACGGATAACTAAAACAGAAGCGGCAATGAACAAGCACAAAATGCGGCATGTTCCCAAATCTGAAAGAAAGTTCTGCTGTGGTTCGTGCGATAAGGTTTTCAACTCTAAGGACACGCTCAAATCTCACGAAAGATCACACATACCGATCGAGGAAAGAAAGATATACCGATGCGAAATATGTGATCTGAAATTCACGACTCGTTCGTCAGCGGCATCTCACAAGCGAGTGGTGCACGAGAAGATCAAGAGCTACGTGTGTGACTTGTGCGGCTACGCGTGCGGCACCAACGGCGAGCTGCGGCAGCACCGCGCCATCCACAGCGACGACAAGCCCTTCGTGTGCAGGACCTGCTCCAAGCCATTCAAAACATATTCGAACCTGAAGACGCACATGGACACGCACGAGGACACGTCGTAcgcgtgcttcgtgtgcagcCGCGTGCTCAACAGCCGCCGCACGCTGCGCAAGCACCTGCTGGTGCACGAGGACAAGTGCCGCCACGTGTGCTCCTACTGCAACAAGGCCTTCAAGCGGCGACAGACGTTGAAGGTGCACATGTACACGCACACGGGCGACAAGCCGCTCACGTGCAAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCACGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGTACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACCACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACACACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGTGGTGCGACGAGCGGTTCTCGTACGCGTCCACGCTGCGCTCGCACCGCCTGCGCTGCCACCCCGACAAGATGGCGGTGCAGTACTCCAACCAGCACTACAACACGCACGTCGTCATGCAAGAGGAGAGCaGCTATATCAAAAACGACATACCCTTGAACATTGCGAAAACGGACGTGGATGctatacaataa
- Protein Sequence
- MAQNVKDLCRLCAKGEGLTKDLIDDNNKNILKMIQEYVHITVNESDDLPTKLCLNCEEKVVTFQLFVLECLKAQETLKKMCVGPYMTCPIKYEDGIEFGLPPIKSEVKVEMMPEELVNVINNEEPFEEDLDADNYISNSDTKLDSDGDLSDSMTLATLKKTKVKKIKRKQITEEEKIEFRNILKKSNLNVKDFVKLECNMCEEPMSTWSALRVHYVKVHKSKPMVFCLCGFVIRSKSVLYKHVSDHRIESRKFKKNDSDSEKNEESKYASLNVNDFVNFTCQFCQKECKSWYSLKAHCEDMHNTVPVVRCSCGITLKSKSVLYKHVQDHKNPNVICCDKCPRITKTEAAMNKHKMRHVPKSERKFCCGSCDKVFNSKDTLKSHERSHIPIEERKIYRCEICDLKFTTRSSAASHKRVVHEKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRTCSKPFKTYSNLKTHMDTHEDTSYACFVCSRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMHEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSYRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYHTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEWCDERFSYASTLRSHRLRCHPDKMAVQYSNQHYNTHVVMQEESSYIKNDIPLNIAKTDVDAIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -