Basic Information

Insect: Coenonympha arcania
Gene Symbol: -
Assembly: GCA_036785405.1
Location: CM072075.1:266193-279145[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00061 0.045 15.0 1.2 2 20 191 209 190 212 0.94

2 20 0.00035 0.026 15.8 1.3 1 23 218 240 218 240 0.99

3 20 9.8e-07 7.2e-05 23.8 1.3 1 23 246 268 246 268 0.98

4 20 9.8e-07 7.2e-05 23.8 1.3 1 23 295 317 295 317 0.98

5 20 9.8e-07 7.2e-05 23.8 1.3 1 23 344 366 344 366 0.98

6 20 9.8e-07 7.2e-05 23.8 1.3 1 23 393 415 393 415 0.98

7 20 9.8e-07 7.2e-05 23.8 1.3 1 23 442 464 442 464 0.98

8 20 9.8e-07 7.2e-05 23.8 1.3 1 23 491 513 491 513 0.98

9 20 9.8e-07 7.2e-05 23.8 1.3 1 23 540 562 540 562 0.98

10 20 9.8e-07 7.2e-05 23.8 1.3 1 23 589 611 589 611 0.98

11 20 9.8e-07 7.2e-05 23.8 1.3 1 23 638 660 638 660 0.98

12 20 9.8e-07 7.2e-05 23.8 1.3 1 23 687 709 687 709 0.98

13 20 9.8e-07 7.2e-05 23.8 1.3 1 23 736 758 736 758 0.98

14 20 9.8e-07 7.2e-05 23.8 1.3 1 23 785 807 785 807 0.98

15 20 0.0016 0.12 13.7 3.7 1 23 813 835 813 835 0.98

16 20 1.3e-05 0.00095 20.3 0.1 1 23 841 863 841 863 0.95

17 20 2.4e-06 0.00018 22.6 0.9 1 23 869 891 869 891 0.98

18 20 0.00078 0.058 14.7 4.5 1 23 897 919 897 919 0.99

19 20 0.0018 0.13 13.6 1.6 5 23 928 946 926 946 0.93

20 20 4.1e-05 0.0031 18.7 5.3 1 23 952 975 952 975 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00061	0.045	15.0	1.2	2	20	191	209	190	212	0.94
2	20	0.00035	0.026	15.8	1.3	1	23	218	240	218	240	0.99
3	20	9.8e-07	7.2e-05	23.8	1.3	1	23	246	268	246	268	0.98
4	20	9.8e-07	7.2e-05	23.8	1.3	1	23	295	317	295	317	0.98
5	20	9.8e-07	7.2e-05	23.8	1.3	1	23	344	366	344	366	0.98
6	20	9.8e-07	7.2e-05	23.8	1.3	1	23	393	415	393	415	0.98
7	20	9.8e-07	7.2e-05	23.8	1.3	1	23	442	464	442	464	0.98
8	20	9.8e-07	7.2e-05	23.8	1.3	1	23	491	513	491	513	0.98
9	20	9.8e-07	7.2e-05	23.8	1.3	1	23	540	562	540	562	0.98
10	20	9.8e-07	7.2e-05	23.8	1.3	1	23	589	611	589	611	0.98
11	20	9.8e-07	7.2e-05	23.8	1.3	1	23	638	660	638	660	0.98
12	20	9.8e-07	7.2e-05	23.8	1.3	1	23	687	709	687	709	0.98
13	20	9.8e-07	7.2e-05	23.8	1.3	1	23	736	758	736	758	0.98
14	20	9.8e-07	7.2e-05	23.8	1.3	1	23	785	807	785	807	0.98
15	20	0.0016	0.12	13.7	3.7	1	23	813	835	813	835	0.98
16	20	1.3e-05	0.00095	20.3	0.1	1	23	841	863	841	863	0.95
17	20	2.4e-06	0.00018	22.6	0.9	1	23	869	891	869	891	0.98
18	20	0.00078	0.058	14.7	4.5	1	23	897	919	897	919	0.99
19	20	0.0018	0.13	13.6	1.6	5	23	928	946	926	946	0.93
20	20	4.1e-05	0.0031	18.7	5.3	1	23	952	975	952	975	0.98

Sequence Information

Coding Sequence: ATGGATTTCAAAACCATATGCAGAATTTGCCTGGAAACATCGAAACAAACCTTCGATATTTATTCAAGCTATTATATTAAAAGAAACATTTTATACTGCGAAATGTTATCAGATTGTACTAAACTTAAGCCTGTAGAAGAAGATGGTCTCCCGCGCTTAATCTGCAAGGAATGCAGCCGTCAACTGAAACACTCCTACGTCTTCAACATTCAGTGCATAGAAAGTGACCGCACATTACGCAGATACTTAGAGGATCCTGCAGTGCCCAGGGAGGACGAGAGACAAGTGAGTGTGGAGGTGAAGAGCGAGGACCTGGAGGTGGAGCATTTGGACATGATACTCAAGGAGAACAAGGCGTTTGATGATAGCATCAAATCTGAGCCTGAAAATGCCAATGAAGTAGACGGCAGCTGCTGGGACGCTGATGATGACAACTTGGTGTTGGAAGAAATTAAACTCACTAAAACATTAAAAGTCAATGGAGATGACGGCTTACCAAAGAAAAGAGGAAGGAGAAGAAAAGAGTGCGTGCTGGGTGAGATGCAGCTGCCGGAAAGCAAGATGCCGTCCCAGTGCGACGTGTGCGGCAAGATCATCAGCACCAAGAGCAACCTCAAGGCGCACAAGATCTGTCACACCGACAGCCGCCCGTACAAGTGCGCGCAGTGCCCAGCCTCATTCAAAGGCCACAGCGCGCTGTTCCAGCACAAGCGGGTGCACACCGGCGAGACGCCCTTCCACTGCGAGTACTGCCCCAAGCGGTTCAGCCGCCGCGCGGGCCTCATCAACCACATCCGAGTGCACACCGGTGAGTGTGTTGTCGTCGTCAGAGGCCACAGCGCGCTGTTCCAGCACAAGCGGGTGCACACCGGCGAGACGCCCTTCCACTGCGAGTACTGCCCCAAGCGGTTCAGCCGCCGCGCGGGCCTCATCAACCACATCCGAGTGCACACCGGTGAGTGTGTTGTCGTCGTCAGAGGCCACAGCGCGCTGTTCCAGCACAAGCGGGTGCACACCGGCGAGACGCCCTTCCACTGCGAGTACTGCCCCAAGCGGTTCAGCCGCCGCGCGGGCCTCATCAACCACATCCGAGTGCACACCGGTGAGTGTGTTGTCGTCGTCAGAGGCCACAGCGCGCTGTTCCAGCACAAGCGGGTGCACACCGGCGAGACGCCCTTCCACTGCGAGTACTGCCCCAAGCGGTTCAGCCGCCGCGCGGGCCTCATCAACCACATCCGAGTGCACACCGGTGAGTGTGTTGTCGTCGTCAGAGGCCACAGCGCGCTGTTCCAGCACAAGCGGGTGCACACCGGCGAGACGCCCTTCCACTGCGAGTACTGCCCCAAGCGGTTCAGCCGCCGCGCGGGCCTCATCAACCACATCCGAGTGCACACCGGTGAGTGTGTTGTCGTCGTCAGAGGCCACAGCGCGCTGTTCCAGCACAAGCGGGTGCACACCGGCGAGACGCCCTTCCACTGCGAGTACTGCCCCAAGCGGTTCAGCCGCCGCGCGGGCCTCATCAACCACATCCGAGTGCACACCGGTGAGTGTGTTGTCGTCGTCAGAGGCCACAGCGCGCTGTTCCAGCACAAGCGGGTGCACACCGGCGAGACGCCCTTCCACTGCGAGTACTGCCCCAAGCGGTTCAGCCGCCGCGCGGGCCTCATCAACCACATCCGAGTGCACACCGGTGAGTGTGTTGTCGTCGTCAGAGGCCACAGCGCGCTGTTCCAGCACAAGCGGGTGCACACCGGCGAGACGCCCTTCCACTGCGAGTACTGCCCCAAGCGGTTCAGCCGCCGCGCGGGCCTCATCAACCACATCCGAGTGCACACCGGTGAGTGTGTTGTCGTCGTCAGAGGCCACAGCGCGCTGTTCCAGCACAAGCGGGTGCACACCGGCGAGACGCCCTTCCACTGCGAGTACTGCCCCAAGCGGTTCAGCCGCCGCGCGGGCCTCATCAACCACATCCGAGTGCACACCGGTGAGTGTGTTGTCGTCGTCAGAGGCCACAGCGCGCTGTTCCAGCACAAGCGGGTGCACACCGGCGAGACGCCCTTCCACTGCGAGTACTGCCCCAAGCGGTTCAGCCGCCGCGCGGGCCTCATCAACCACATCCGAGTGCACACCGGTGAGTGTGTTGTCGTCGTCAGAGGCCACAGCGCGCTGTTCCAGCACAAGCGGGTGCACACCGGCGAGACGCCCTTCCACTGCGAGTACTGCCCCAAGCGGTTCAGCCGCCGCGCGGGCCTCATCAACCACATCCGAGTGCACACCGGTGAGTGTGTTGTCGTCGTCAGAGGCCACAGCGCGCTGTTCCAGCACAAGCGGGTGCACACCGGCGAGACGCCCTTCCACTGCGAGTACTGCCCCAAGCGGTTCAGCCGCCGCGCGGGCCTCATCAACCACATCCGAGTGCACACCGgCGAGAAGTTGTATAGCTGCACGATCTGCTGCAAGGACTTCGTGCAGAAGACGCAGCTGTCCATCCACATGAAGCGGCACAAGGGTGACAAGGCCTTCCTCTGCCAGGTCTGCGGGAAAGGTTTCCCAATAAAATCGGACCTGCGCGTCCACCAGCGTGTTCACAACGGCGAGAAGCCGTACTCCTGCCACCTGTGCGAGAAGACCTTCGCGACCTCCGGGAACCTCTCCATCCACGTCCGGATACACAACAAGGAAGTCAGATACAAGTGCGCGGAGTGTCACCGCGGATTCGTGACGTGCAGCTCGTACAACGTGCACGTGAAGCGGCACAAGGGACAGCGCGACTACCACTGCGAGTGCGGCAAGACCTTCTACACCTCCTCCGCGCTCAAACAACACAAAGTGGTGCATACTGGAGTGAAGAAGTACCAGTGCAAGGTGTGCGAGCGCAAGTTCTCGCAGACCAGCCACCTGAGCCGCCACTTCCGCAAGGAGCACGCCAAGCCCGGGGCGCCGCTGCCGCCCTCGCAGCACTACCGCCGCGTGTTGCCCGACGAAGCGCGCGCCGCCAACATTTTAATCACGGCGGAGGGCGTCAAGTTTGAAGCTTCCTAG
Protein Sequence: MDFKTICRICLETSKQTFDIYSSYYIKRNILYCEMLSDCTKLKPVEEDGLPRLICKECSRQLKHSYVFNIQCIESDRTLRRYLEDPAVPREDERQVSVEVKSEDLEVEHLDMILKENKAFDDSIKSEPENANEVDGSCWDADDDNLVLEEIKLTKTLKVNGDDGLPKKRGRRRKECVLGEMQLPESKMPSQCDVCGKIISTKSNLKAHKICHTDSRPYKCAQCPASFKGHSALFQHKRVHTGETPFHCEYCPKRFSRRAGLINHIRVHTGECVVVVRGHSALFQHKRVHTGETPFHCEYCPKRFSRRAGLINHIRVHTGECVVVVRGHSALFQHKRVHTGETPFHCEYCPKRFSRRAGLINHIRVHTGECVVVVRGHSALFQHKRVHTGETPFHCEYCPKRFSRRAGLINHIRVHTGECVVVVRGHSALFQHKRVHTGETPFHCEYCPKRFSRRAGLINHIRVHTGECVVVVRGHSALFQHKRVHTGETPFHCEYCPKRFSRRAGLINHIRVHTGECVVVVRGHSALFQHKRVHTGETPFHCEYCPKRFSRRAGLINHIRVHTGECVVVVRGHSALFQHKRVHTGETPFHCEYCPKRFSRRAGLINHIRVHTGECVVVVRGHSALFQHKRVHTGETPFHCEYCPKRFSRRAGLINHIRVHTGECVVVVRGHSALFQHKRVHTGETPFHCEYCPKRFSRRAGLINHIRVHTGECVVVVRGHSALFQHKRVHTGETPFHCEYCPKRFSRRAGLINHIRVHTGECVVVVRGHSALFQHKRVHTGETPFHCEYCPKRFSRRAGLINHIRVHTGEKLYSCTICCKDFVQKTQLSIHMKRHKGDKAFLCQVCGKGFPIKSDLRVHQRVHNGEKPYSCHLCEKTFATSGNLSIHVRIHNKEVRYKCAECHRGFVTCSSYNVHVKRHKGQRDYHCECGKTFYTSSALKQHKVVHTGVKKYQCKVCERKFSQTSHLSRHFRKEHAKPGAPLPPSQHYRRVLPDEARAANILITAEGVKFEAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -