Carc001362.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coenonympha arcania
Gene Symbol
-
Assembly
GCA_036785405.1
Location
CM072056.1:2903567-2918028[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.0021 0.15 13.4 0.1 1 23 99 121 99 121 0.96
2 30 0.0021 0.15 13.4 0.1 1 23 152 174 152 174 0.96
3 30 0.0021 0.15 13.4 0.1 1 23 205 227 205 227 0.96
4 30 0.00074 0.055 14.8 0.1 1 23 258 280 258 280 0.96
5 30 0.027 2 9.9 0.2 1 23 289 312 289 312 0.92
6 30 3.4e-05 0.0025 19.0 4.3 1 23 317 339 317 339 0.98
7 30 3.4e-05 0.0025 19.0 4.3 1 23 356 378 356 378 0.98
8 30 3.4e-05 0.0025 19.0 4.3 1 23 395 417 395 417 0.98
9 30 3.4e-05 0.0025 19.0 4.3 1 23 434 456 434 456 0.98
10 30 7.7e-05 0.0057 17.9 3.6 2 23 474 495 473 495 0.96
11 30 3.4e-05 0.0025 19.0 4.3 1 23 512 534 512 534 0.98
12 30 3.4e-05 0.0025 19.0 4.3 1 23 545 567 545 567 0.98
13 30 3.4e-05 0.0025 19.0 4.3 1 23 584 606 584 606 0.98
14 30 0.0092 0.68 11.3 0.6 1 18 623 640 623 640 0.94
15 30 3.4e-05 0.0025 19.0 4.3 1 23 662 684 662 684 0.98
16 30 3.4e-05 0.0025 19.0 4.3 1 23 701 723 701 723 0.98
17 30 3.4e-05 0.0025 19.0 4.3 1 23 740 762 740 762 0.98
18 30 3.4e-05 0.0025 19.0 4.3 1 23 779 801 779 801 0.98
19 30 3.4e-05 0.0025 19.0 4.3 1 23 818 840 818 840 0.98
20 30 3.4e-05 0.0025 19.0 4.3 1 23 894 916 894 916 0.98
21 30 8.6e-05 0.0064 17.7 4.6 1 23 933 955 933 955 0.98
22 30 3.4e-05 0.0025 19.0 4.3 1 23 972 994 972 994 0.98
23 30 3.2e-05 0.0024 19.1 5.2 1 23 1011 1033 1011 1033 0.98
24 30 3.4e-05 0.0025 19.0 4.3 1 23 1050 1072 1050 1072 0.98
25 30 1e-05 0.00077 20.6 0.3 1 23 1078 1100 1078 1100 0.97
26 30 3.2e-05 0.0024 19.1 3.3 1 23 1106 1128 1106 1128 0.98
27 30 4e-07 3e-05 25.1 0.5 1 23 1134 1156 1134 1156 0.98
28 30 0.0058 0.43 12.0 2.9 1 23 1162 1184 1162 1184 0.98
29 30 0.0041 0.31 12.4 6.2 1 23 1190 1212 1190 1212 0.97
30 30 0.00031 0.023 16.0 0.5 1 22 1218 1239 1218 1239 0.94

Sequence Information

Coding Sequence
ATGACTGTACCTGTTAGAAATGGGAACTCTATCTGGGGAAGGACTAAGGCCCGGGTGCCGGAGAGCGCCGGGGGTCAGCCGGATCGCAGGACATCGCATTATCGACCTTTCTGGGATTATTTGGGTCCCAAGGCTCGCTATAGCCTCCTCCAGCCATATGGCCAGGGTTGTGGTTATCCCGCCACTGTTCGGACGCCAGAGCCTCGTTCGTTATCTAGCAGGGAGCACCGCGGAGACCGtttggccgccgccgccagttGGCGCGAGCAGGCGGTGCACCTCGGTGAGAGGAACTACGCGTGCAACGAGTGCGACGCGCGGTTCGCGTACCCGCGCTCGCTGGCCGTGCACCGCGTGTCGCACCGGCGCGGCCGGACGGTCCGAGGATACGCCTGTGACCTGTGCGGGAAGGTGCGTATTGTTCATAAGGCGGTGCACCTCGGTGAGAGGAACTACGCGTGCAACGAGTGCGACGCGCGGTTCGCGTACCCGCGCTCGCTGGCCGTGCACCGCGTGTCGCACCGGCGCGGCCGGACGGTCCGAGGATACGCCTGTGACCTGTGCGGGAAGGTGCGTATTGTTCATAAGGCGGTGCACCTCGGTGAGAGGAACTACGCGTGCAACGAGTGCGACGCGCGGTTCGCGTACCCGCGCTCGCTGGCCGTGCACCGCGTGTCGCACCGGCGCGGCCGCACGGTCCGAGGATACGCCTGTGACCTGTGCGGGAAGGTGCGTATTGTTCATAAGGCGGTGCACCTCGGTGAGAGGAACTACGCGTGCAACGAGTGCGACGCGCGGTTCTCGTACCCGCGCTCGCTGGCCGTGCACCGCGTGTCGCACCGGCGCGGCCGCACGGTCCGAGGATACGCCTGCGACCTGTGCGGGAAGGTACTGAACCACCCGTCGTCCGTGGTGTACCACAAGCAGGCGGAGCACGCGGAGCAGCGCTTCGTGTGCGGCACGTGCGGCAAGCACTTCCGACAccggcagctgctgcagcggcaCCAGCTCGTGCACTCGCAGCTGCGACCCTTCCCGTGCCAGGCGGAGCACGCGGAGCAGCGCTTCGTGTGCGGCACGTGCGGCAAGCACTTCCGACAccggcagctgctgcagcggcaCCAGCTCGTGCACTCGCAGCTGCGACCCTTCCCGTGCCAGGCGGAGCACGCGGAGCAGCGCTTCGTGTGCGGCACGTGCGGCAAGCACTTCCGACAccggcagctgctgcagcggcaCCAGCTCGTGCACTCGCAGCTGCGGCCCTTCCCGTGCCAGGCGGAGCACGCGGAGCAGCGCTTCGTGTGCGGCACGTGCGGCAAGCACTTCCGACAccggcagctgctgcagcggcaCCAGCTCGTGCACTCGCAGCTGCGACCCTTCCCGTGCCAGGCGGAGCACGCGGAGCAGCGCTTAGTGTGCGGCACGTGCGGCAAGCACTTCCGACAccggcagctgctgcagcggcaCCAGCTCGTGCACTCGCAGCTGCGGCCCTTCCCGTGCCAGGCGGAGCACGCGGAGCAGCGCTTCGTGTGCGGCACGTGCGGCAAGCACTTCCGACAccggcagctgctgcagcggcaCCAGCTCGTGCACTCGCAGCTGCGACCCTTCCCGTGCCAGCGCTTCGTGTGCGGCACGTGCGGCAAGCACTTCCGACAccggcagctgctgcagcggcaCCAGCTCGTGCACTCGCAGCTGCGACCCTTCCCGTGCCAGGCGGAGCACGCGGAGCAGCGCTTCGTGTGCGGCACGTGCGGCAAGCACTTCCGACACCGGCAGCTGTTGCAGCGGCACCAGCTCGTGCACTCGCAGCTGCGACCCTTCCCGTGCCAGGCGGAGCACGCGGAGCAGCGCTTCGTGTGCGGCACGTGCGGCAAGCACTTCCGACAccggcagctgctgcagcgGTACCAGCTCGTGCACTCGCAGCTGCGACCCTTCCCGTGCCAGGCGGAGCACGCGGAGCAGCGCTTCGTGTGCGGCACGTGCGGCAAGCACTTCCGACAccggcagctgctgcagcggcaCCAGCTCGTGCACTCGCAGCTGCGGCCCTTCCCGTGCCAGGCGGAGCACGCGGAGCAGCGCTTCGTGTGCGGCACGTGCGGCAAGCACTTCCGACAccggcagctgctgcagcggcaCCAGCTCGTGCACTCGCAGCTGCGGCCCTTCCCGTGCCAGGCGGAGCACGCGGAGCAGCGCTTCGTGTGCGGCACGTGCGGCAAGCACTTCCGACAccggcagctgctgcagcggcaCCAGCTCGTGCACTCGCAGCTGCGGCCCTTCCCGTGCCAGGCGGAGCACGCGGAGCAGCGCTTCGTGTGCGGCACGTGCGGCAAGCACTTCCGACAccggcagctgctgcagcggcaCCAGCTCGTGCACTCGCAGCTGCGACCCTTCCCGTGCCAGGCGGAGCACGCGGAGCAGCGCTTCGTGTGCGGCACGTGCGGCAAGCACTTCCGACAccggcagctgctgcagcggcaCCAGCTCGTGCACTCGCAGCTGCGGCCCTTCCCGTGCCAGCACGTGCGGCAAGCACTTCCGACAccggcagctgctgcagcggcaCCAGCTCGTGCACTCGCAGCTGCGGCCCTTCCCGTGCCAGGTATAGTGCAGGTGTACCACAAGCAGGCGGAGCACGCGGAGCAGCGCTTCGTGTGCGGCACGTGCGGCAAGCACTTCCGACAccggcagctgctgcagcggcaCCAGCTCGTGCACTCGCAGCTGCGGCCCTTCCCGTGCCAGGCGGAGCACGCGGAGCAGCGCTTCGTGTGCGGCACGTGCGGCAAGCACTTCCGACAccggcagctgctgcagcggcaCCGGCTCGTGCACTCGCACCTGCGGCCCTTCCCGTGCCAGGCGGAGCACGCGGAGCAGCGCTTCGTGTGCGGCACGTGCGGCAAGCACTTCCGACAccggcagctgctgcagcggcaCCAGCTCGTGCACTCGCAGCTGCGACCCTTCCCGTGCCAGGCGGAGCACGCGGAGCAGCGCTTCGTGTGTAGCACGTGCGGCAAGCACTTCCGACAccggcagctgctgcagcggcaCCAGCTCGTGCACTCGCAGCTGCGGCCCTTCCCGTGCCAGGCGGAGCACGCGGAGCAGCGCTTCGTGTGCGGCACGTGCGGCAAGCACTTCCGACAccggcagctgctgcagcggcaCCAGCTCGTGCACTCGCAGCTGCGACCTTTCCCGTGCAAGgTTTGCGACGCGACGTTCAAGACGAAGGCGAATCTTGTTAATCACCAGCTGCTCCACACCGGCGTGAAGAAGTTCACCTGCGAGATCTGCAAGCAGAAGTTCGCGCACAAGACCAGTCTGACGTTGCACATGCGGCTGCACACTGGGTTAAAACCGTTCAAATGCGGCATGTGTGGCAAAAGCTTCAGCCAGAAGGGAAATCTGTCGGAGCACGAGCGTATACATACGGGCGAGAAGCCGTACCAGTGCGCGCTGTGTCCGCGCAGGTTCACCACGTCCTCGCAGCACAGGCTGCACGCGAGGCGGCACGCCTTCGACCGCGCGCACTCGTGCCCCAAGTGCGACAAGCGGTTCACCACGTCCTCGCAGCACAGGCTGCACGCGAGGCGGCACGCCTTCGACCGCGCGCACTCGTGCCCCAAGTGCGACAAGCGGTTCGTATCGCGCAGCTCGTGGGCGCTGCACGTGCGGCGCGGCGACTGCACCAAGCTCCAGGCGGGGACGGAGAAGACCAAACTAATGCCCAAGCAAGTGAGCCTGCTGGTGAGCGATAAGACTGCGCAGCAGCAActccagctgcagccgctgccgcTGCAGCACAAGCTGGGCGCGGAGGCGGACGACGAGCGCGTCATCTACGTGGCGTACGACGCGGACGACTCGCAGACCGGCGCCTACACCATACTGGACCCTGAACAGGTGAACTCATCACGTGTTTGTACGACGCCACTGCATCATCAActccagctgcagccgctgccgcTGCAGCACAAGCTGGGCGCGGAGGCGGACGACGAGCGCGTCATCTACGTGGCGTACGACGCGGACGACTCGCAGACCGGCGCCTACACCATACTGGACCCTGAACAGGTACAAGGGGTGAACATAGAGGAGAGCCGCGTGCTGTCCAGCTGCCAGCTGTACGGCGCGGGATCCTCACTGCTGGTGCCGCAGCAGCTGCAACAGTTGCAACCGCTGCATCAGTTGCAACCGCTGCAACAGCTGCAGCCCATGAAGCTGGAAACTGAGGAGCTGCATTTGCACATCGAGgaagaggaggaggaggagtCGATGCAAAGCAGAGAGAGCATACCCGTGACGGACGAGCAAGGCAACCCGCTGCACTTCACGATGCAGGACGGCACCAAGCTGGCCATCACCTCCATTGACGGCAAGACGTTGCAGGTCGTCACACAAGATGGACAGACCATACCCGTTGAGATTAATGGCTACAATGAGCAAGAAGTGCACATCACGGAGAGCGCGGCGACAGCGCCGGCGCAGCAGGTCGACGTTCACAAGTCCGTCGACGCGTCGGCGCCGATACACTACTTAATTATGTAA
Protein Sequence
MTVPVRNGNSIWGRTKARVPESAGGQPDRRTSHYRPFWDYLGPKARYSLLQPYGQGCGYPATVRTPEPRSLSSREHRGDRLAAAASWREQAVHLGERNYACNECDARFAYPRSLAVHRVSHRRGRTVRGYACDLCGKVRIVHKAVHLGERNYACNECDARFAYPRSLAVHRVSHRRGRTVRGYACDLCGKVRIVHKAVHLGERNYACNECDARFAYPRSLAVHRVSHRRGRTVRGYACDLCGKVRIVHKAVHLGERNYACNECDARFSYPRSLAVHRVSHRRGRTVRGYACDLCGKVLNHPSSVVYHKQAEHAEQRFVCGTCGKHFRHRQLLQRHQLVHSQLRPFPCQAEHAEQRFVCGTCGKHFRHRQLLQRHQLVHSQLRPFPCQAEHAEQRFVCGTCGKHFRHRQLLQRHQLVHSQLRPFPCQAEHAEQRFVCGTCGKHFRHRQLLQRHQLVHSQLRPFPCQAEHAEQRLVCGTCGKHFRHRQLLQRHQLVHSQLRPFPCQAEHAEQRFVCGTCGKHFRHRQLLQRHQLVHSQLRPFPCQRFVCGTCGKHFRHRQLLQRHQLVHSQLRPFPCQAEHAEQRFVCGTCGKHFRHRQLLQRHQLVHSQLRPFPCQAEHAEQRFVCGTCGKHFRHRQLLQRYQLVHSQLRPFPCQAEHAEQRFVCGTCGKHFRHRQLLQRHQLVHSQLRPFPCQAEHAEQRFVCGTCGKHFRHRQLLQRHQLVHSQLRPFPCQAEHAEQRFVCGTCGKHFRHRQLLQRHQLVHSQLRPFPCQAEHAEQRFVCGTCGKHFRHRQLLQRHQLVHSQLRPFPCQAEHAEQRFVCGTCGKHFRHRQLLQRHQLVHSQLRPFPCQHVRQALPTPAAAAAAPARALAAAALPVPGIVQVYHKQAEHAEQRFVCGTCGKHFRHRQLLQRHQLVHSQLRPFPCQAEHAEQRFVCGTCGKHFRHRQLLQRHRLVHSHLRPFPCQAEHAEQRFVCGTCGKHFRHRQLLQRHQLVHSQLRPFPCQAEHAEQRFVCSTCGKHFRHRQLLQRHQLVHSQLRPFPCQAEHAEQRFVCGTCGKHFRHRQLLQRHQLVHSQLRPFPCKVCDATFKTKANLVNHQLLHTGVKKFTCEICKQKFAHKTSLTLHMRLHTGLKPFKCGMCGKSFSQKGNLSEHERIHTGEKPYQCALCPRRFTTSSQHRLHARRHAFDRAHSCPKCDKRFTTSSQHRLHARRHAFDRAHSCPKCDKRFVSRSSWALHVRRGDCTKLQAGTEKTKLMPKQVSLLVSDKTAQQQLQLQPLPLQHKLGAEADDERVIYVAYDADDSQTGAYTILDPEQVNSSRVCTTPLHHQLQLQPLPLQHKLGAEADDERVIYVAYDADDSQTGAYTILDPEQVQGVNIEESRVLSSCQLYGAGSSLLVPQQLQQLQPLHQLQPLQQLQPMKLETEELHLHIEEEEEEESMQSRESIPVTDEQGNPLHFTMQDGTKLAITSIDGKTLQVVTQDGQTIPVEINGYNEQEVHITESAATAPAQQVDVHKSVDASAPIHYLIM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-