Carc012092.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coenonympha arcania
Gene Symbol
-
Assembly
GCA_036785405.1
Location
CM072066.1:5688064-5709676[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 34 5.7e-05 0.0043 18.3 5.3 1 23 14 36 14 36 0.97
2 34 0.013 0.95 10.9 1.9 1 15 74 88 74 95 0.76
3 34 0.00022 0.016 16.5 3.2 1 19 101 119 101 121 0.95
4 34 5.7e-05 0.0043 18.3 5.3 1 23 182 204 182 204 0.97
5 34 1.8e-05 0.0014 19.8 7.3 1 23 210 232 210 232 0.97
6 34 1.2e-05 0.00089 20.4 3.8 1 23 238 260 238 260 0.97
7 34 0.00017 0.012 16.8 6.7 1 23 266 288 266 288 0.97
8 34 0.00016 0.012 16.8 6.5 1 23 294 316 294 316 0.97
9 34 7.9e-07 5.9e-05 24.1 1.9 1 23 322 344 322 344 0.98
10 34 1.6e-05 0.0012 20.1 7.7 1 23 350 372 350 372 0.98
11 34 5.6e-06 0.00042 21.4 7.6 1 23 378 400 378 400 0.98
12 34 1.4e-05 0.001 20.2 5.5 1 23 406 428 406 428 0.98
13 34 4.7e-05 0.0035 18.6 6.7 1 23 434 456 434 456 0.97
14 34 1.4e-05 0.001 20.2 5.5 1 23 462 484 462 484 0.98
15 34 4.7e-05 0.0035 18.6 6.7 1 23 490 512 490 512 0.97
16 34 1.4e-05 0.001 20.2 5.5 1 23 518 540 518 540 0.98
17 34 0.15 11 7.5 3.4 3 23 548 568 546 568 0.84
18 34 1.4e-05 0.001 20.2 5.5 1 23 574 596 574 596 0.98
19 34 3.6e-05 0.0027 18.9 3.5 1 21 602 622 602 623 0.95
20 34 0.00032 0.024 15.9 3.5 1 23 634 656 634 656 0.97
21 34 1.4e-05 0.001 20.2 5.5 1 23 662 684 662 684 0.98
22 34 1.5e-05 0.0011 20.1 4.8 1 23 690 712 690 712 0.97
23 34 2.1e-05 0.0016 19.6 0.6 3 21 727 745 726 746 0.95
24 34 2.5e-05 0.0019 19.4 3.1 3 23 860 880 859 880 0.97
25 34 4.6e-05 0.0034 18.6 6.3 1 23 886 908 886 908 0.97
26 34 7.5e-06 0.00056 21.1 5.9 1 23 914 936 914 936 0.98
27 34 9.2e-05 0.0068 17.6 7.8 1 23 942 964 942 964 0.97
28 34 0.0042 0.31 12.4 5.0 6 23 972 989 970 989 0.96
29 34 5.2e-05 0.0038 18.4 2.4 1 22 995 1016 995 1016 0.94
30 34 0.00068 0.05 14.9 2.9 5 23 1094 1112 1093 1112 0.95
31 34 0.0042 0.31 12.4 5.0 6 23 1120 1137 1118 1137 0.96
32 34 0.018 1.4 10.4 1.5 8 23 1150 1165 1145 1165 0.94
33 34 0.0012 0.088 14.1 0.3 1 23 1172 1194 1172 1194 0.96
34 34 0.024 1.8 10.0 5.3 1 23 1202 1224 1202 1224 0.99

Sequence Information

Coding Sequence
ATGTTGAACCACGTGTTAAAACACACGGGCGAGACGCCGCACCGCTGCGAGATCTGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCACACCGGAGCACTAAATGAACCACGTCATGTGGCACACTGGTACGTTGACACACACGCATCGTATTCCGCAAGGAAAGTAAACCACGTGCTAAAACACACGGGCGAGACGCCGCACCGCTGCGAGATCTGCAAGAAGAGCTTCACGCGCAAGGAGAAAGTGAACCACGTGCTAAAACACACGGGCGAGACGCCACACCGCTGCGAGATCTGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGAAAGTGAACCACGTGCTAAAACACACGGGCGAGACGCCACACCGCTGCGAGATCTGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCACACCGGTACGTTGACACACACGCGTCGTATCCCGCAAGGAAAGTGAACCACGTGCTAAAACACACGGGCGAGACGCCACACCGCTGCGAGATCTGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCACACCGGTGAAACGCCGCACCATTGTCAAATATGCGGAAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGCGATCCCATACAAACGATACACCGTTCAAATGCGAACTGTGCAGCAAGTCCTTCACCAGGAAGGAACACTTCACCAACCACATTCTTTGGCATACTGGCGAGACCCCGCACCGCTGCGACTTCTGCTCGAAGACGTTCACGCGCAAGGAGCACCTACTGAACCACGTGCGCCAGCACACGGGCGAGTCGCCGCACCGCTGCAACTTCTGCTCCAAGTCCTTCACGCGCCGCGAGCACCTCGTCAACCACGTGCGACAGCACACCGGCGAGACGCCCTTCCAGTGCGGCTACTGCCCCAAGGCCTTCACCAGGAAGGATCATCTCGTAAACCACGTCCGTCAACACACCGGGGAATCCCCGCACAAGTGCTCGTACTGCACGAAGTCGTTCACGCGCAAGGAGCATCTGACCAATCACGTGCGACAGCATACCGGGGAGTCCCCGCACCGCTGCACCTACTGCTCCAAGTCCTTCACGAGGAAGGAGCACCTCACCAATCACATTAGACAGCATACGGGGGAGACTCCCCACAAGTGCACGTTCTGCCCGCGAGCCTTCTCCCGCAAGGAGCATCTCAACCAGCACATCCGGCAGCACACCGGCGACACGCCGCACACCTGCACCTACTGCAGCAAGACCTTCACCAGGAAGGAGCACCTCGTCACCCACGTGCGACAGCATACGGGGGAGACTCCCCACAAGTGCACGTTCTGCCCGCGAGCCTTCTCCCGCAAGGAGCATCTCAACCAGCACATCCGGCAGCACACCGGCGACACGCCGCACACCTGCACCTACTGCAGCAAGACCTTCACCAGGAAGGAGCACCTCGTCACCCACGTGCGACAGCATACGGGGGAGACTCGCCACAAGTGCACGTTCTGCCCGCGAGCCTTCTCCCGCAAGGAGCATCTCAACCAGCACATCCGGCAGCACACCGGCGACACGCCGCACACCTGCACCTACTGGAGCAAGACCTTCACCAGGAAGGAGCACCTCGTCACCCACGTGCGACAGCATACGGGGGAGACTCCCCACAAGTGCACGTTCTGCCCGCGAGCCTTCTCCCGCAAGGAGCATCTCAACCAGCACATCCGGCAGCACACCGGCGACACGCCGCACACCTGCACCTACTGCAGCAAGACCTTCACCAGGAAGGAGCATCTCGTCACCCACGTGCGGAGCATCTCAACCAGCACATCCGGCGACACGCCGCACACCTGCACCTACTGCAATAAGATCTTCACCAGGAAGGAGTACGTCGTCACCCACGTGCGACAGCATACGAGGAAGACTCCCCACAAGTGCACGTTCTGCCCGCGAGCCTTCTCTCGCAAGGAGCATCTCAACCAGCACATCCGGCAGCACACCGGCGACACGCCGCACACCTGCACCTACTGCAATAAGACCTTCACCAGGAAGGAGTACCTCGTCACCCACGTGCGACAGCATACGGGGGAGGCTCTCCACAAGAGCACGTTCTACCCGCGAGCCTGCCCCTACTGCAGCAAGACCTTCACCAGGAAGGAGCACCTCGTCACCCACGTGCGGTACGCAGCAATGTACTCTGTTGTGCAGACAGCATACGGGGGAGACTCCCCACAAGTGCATGTTCTACCTGCGAGCCTGCACCTACTGCAGCAAGACCTTCACCAGGAAGGAGCACCTCGTCACCCACGTGCGGTACGTAGCAATGTACTCTGTTGTGCAGACAGCATACGGGGGAGGCTCCCCACAAGAGCACGTTCTACCCGCGAGCCTGCCCCTACTGCAGCAAGACCTTCACCAGGAAGGAGCACCTCGTCACCCACGTGCGGTACGCAGCAATGTACTCTGTTGTGCAGACAGCATACGGGGGAGACTCCCCACAAGTGCACGTTCTACCCGCGAGCCTGCACCTACTGCAGCAAGACCTTCACCAGGAAGGAGCACCTCGTCACCCACGTGCGGCAACACACGGGCGAGACGCCGTTCAAGTGCACGTACTGCACCAAGGCGTTCTCGCGGAAGGAGCACCTCACCAACCACGTGCACCTGCACACCGGCGAGACTCCGCACAAGTGCCCCTTCTGCACCAAGACCTTCTCCAGGCGAGAGCACCTCACCAATCACGTCCGGATACACACGGGCGAGTCGCCGCACCGGTGCGAGTTCTGCCAGAAGACGTTCACGCGCAAGGAGCACCTCACCAACCACCTGAAGCAGCACACGGGGGACACGCCGCACGCGTGCAAGAAGACGTTCACGCGCAAGGAGCACCTCACCAACCACCTGAAGCAGCACACGGGGGACACGCCGCACGCGTGCAAGGTGTGCTCCAAGCAGTTCACGAGGAAGGAGCACCTCGTCACACACATGCGTTCACGAGGAAGGAGCACCTCGTCACACACATGCGGTACGCTTTGTTACATCATCATACGCGGGAGAGTTCTGCCAGAAGACGTTCACGCGCAAGGAGCACCTCACCAACCACCTGAAGCAGCACACGGGGGACACGCCGCACGCGTGCAAGGTGTGCTCCAAGCAGTTCACGAGGAAGGAGCACCTCGTCACACACATGCGGTACGCTTTGTTACATCATCATACGCGGGAGAGTTCTGCCAGAAGACGTTCACGCGCAAGGAGCACCTCACCAACCACCTGAAGCAGCACACGGGGGACACGCCGCACGCGTGCAAGAAGACGTTCACGCGCAAGGAGCACCTCACCAACCACCTGAAGCAGCACACGGGGGACACGCCGCACGCGTGCAAGGTGTACTCCAAGCAGTTCACGAGGAAGGAGCACCTCGTCACACACATGCGGTCACACAGTTGCGGCGACCGACCGTTCAGTTGCGGTGAATGCGGCAAATCGTTCCCATTGAAAGGCAATCTGCTGTTTCACGAACGGTCGCACAAAAGCGGCACCGCTAAGCAGTTCCGCTGCGAAATCTGCTCTAAGGAGTTCATGTGCAAAGGTCACCTGGTGTCGCACCGGCGAACGCACGACGCGGGAGAGACTGCGACGAACTCTGAACCTGTGGCCGACAGCGAGGAGTGCGGCGACTACGCCAAGTGCGAGAAGGACGTCGAAATGCCCGAGAGGAAACACGATATCAGAGGAACAGCGGACAACAGAAATAACGAAAACAGCGGAACACAAGCTCAGCTGAGCACTGTAATGCAAATAACAAGCCAGCAACCAGTCCGAGCGGGCGCGGTgacgagcgcggcgagcggcgcgacGGGCACGTTCACGCACGCGGCGGGCGCGCAGCACCACGCCGGCGCCACCATCGCGCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence
MLNHVLKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGALNEPRHVAHWYVDTHASYSARKVNHVLKHTGETPHRCEICKKSFTRKEKVNHVLKHTGETPHRCEICKKSFTRKEHFMNHESEPRAKTHGRDATPLRDLQEELHAQGALHEPRHVAHRYVDTHASYPARKVNHVLKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFKCELCSKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTYCSKSFTRKEHLTNHIRQHTGETPHKCTFCPRAFSRKEHLNQHIRQHTGDTPHTCTYCSKTFTRKEHLVTHVRQHTGETPHKCTFCPRAFSRKEHLNQHIRQHTGDTPHTCTYCSKTFTRKEHLVTHVRQHTGETRHKCTFCPRAFSRKEHLNQHIRQHTGDTPHTCTYWSKTFTRKEHLVTHVRQHTGETPHKCTFCPRAFSRKEHLNQHIRQHTGDTPHTCTYCSKTFTRKEHLVTHVRSISTSTSGDTPHTCTYCNKIFTRKEYVVTHVRQHTRKTPHKCTFCPRAFSRKEHLNQHIRQHTGDTPHTCTYCNKTFTRKEYLVTHVRQHTGEALHKSTFYPRACPYCSKTFTRKEHLVTHVRYAAMYSVVQTAYGGDSPQVHVLPASLHLLQQDLHQEGAPRHPRAVRSNVLCCADSIRGRLPTRARSTREPAPTAARPSPGRSTSSPTCGTQQCTLLCRQHTGETPHKCTFYPRACTYCSKTFTRKEHLVTHVRQHTGETPFKCTYCTKAFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRREHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLKQHTGDTPHACKKTFTRKEHLTNHLKQHTGDTPHACKVCSKQFTRKEHLVTHMRSRGRSTSSHTCGTLCYIIIRGRVLPEDVHAQGAPHQPPEAAHGGHAARVQGVLQAVHEEGAPRHTHAVRFVTSSYAGEFCQKTFTRKEHLTNHLKQHTGDTPHACKKTFTRKEHLTNHLKQHTGDTPHACKVYSKQFTRKEHLVTHMRSHSCGDRPFSCGECGKSFPLKGNLLFHERSHKSGTAKQFRCEICSKEFMCKGHLVSHRRTHDAGETATNSEPVADSEECGDYAKCEKDVEMPERKHDIRGTADNRNNENSGTQAQLSTVMQITSQQPVRAGAVTSAASGATGTFTHAAGAQHHAGATIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-