Carc027676.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- JAWDAA010000029.1:8048551-8049390[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-07 9e-05 23.0 0.0 2 37 16 51 15 58 0.92
Sequence Information
- Coding Sequence
- ATGCCTGGCAATTATAAAAGAACATCGACTCGGAAGAGTTGGTCACAAGAAGACATGAATAAGGCCATCGAAGCTGTAAAAGAAAACAGGATGGGTTGGCTCTTGGCATCCAAACACTTTAATGTGCCACAAGCAACTCTTCGTCGTCATTTTTATAGTACTCCAGTAAATCTCGGTCGTTTTAAACCAACTTTTGACGCAGGTATGGAAAAAGTGCTAGTGGATCATATGCTTGAGTTTGAAAGTCGACTATTTGGATTTAATACAACCGACATAAGAAAATTAGCTTTTGAATTTGCAGAAAGATTAGGGCTGGAACACAGATttgataagaataaaaaaatagctggCTGGGATTGGTTAAAAGGATTTAGAGAACGCAACCCTCAAATCTCACTCAGAGCTCCAGAGCCGACGTCTGCAGCAAGGGCAAAAGCATTCAATAAACCTCAAGTAATGAAGTTCTTTTCTCTTTTGGAAAAAACAGTGGCAGAAAATGGAATTCAGGCACATAGAATTTATAATATGGATGAGTCTGGACTGACCACTGTTCAAAAGCCCCCGAAAGTATTTGCTTCCAAAGGAAAAAAACAAGTTGGTGCTGTCACAAGTGATGAACGTGGTCAACATTTCACAGTTGTTGTCTGTGCTAATGCCATCGGAAACTTTGTTCCACCTGCAATAATCATTCCTAGAAAAAATCACAAAGCCGAATACTTTGATGGTGCTCCACCAGGTACCTTAGAGCTGTGCAACCCCTCTGGATACATGATTGGTGACTTATTTGTGAACTTATCAAACTTCAACAGTTCCTTATTGAAAGAGCAATTTACGATATAa
- Protein Sequence
- MPGNYKRTSTRKSWSQEDMNKAIEAVKENRMGWLLASKHFNVPQATLRRHFYSTPVNLGRFKPTFDAGMEKVLVDHMLEFESRLFGFNTTDIRKLAFEFAERLGLEHRFDKNKKIAGWDWLKGFRERNPQISLRAPEPTSAARAKAFNKPQVMKFFSLLEKTVAENGIQAHRIYNMDESGLTTVQKPPKVFASKGKKQVGAVTSDERGQHFTVVVCANAIGNFVPPAIIIPRKNHKAEYFDGAPPGTLELCNPSGYMIGDLFVNLSNFNSSLLKEQFTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01020212;
- 90% Identity
- iTF_00837470;
- 80% Identity
- -