Carc022296.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072076.1:11433640-11440367[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.7e-07 0.00065 20.2 0.1 4 36 160 193 157 195 0.91 2 2 0.0017 1.2 9.7 0.0 23 37 202 217 199 223 0.86
Sequence Information
- Coding Sequence
- ATGAGTGAAGAAATCACTCGTGGTAGATGCAAGTGCTGCTTGGGCGACAGCGAGTTGAGGAGTTTATGGGAGAGATATGACGTCGAAGGAGAAGAAGAGCATTATGGAGAAATGCTGAAAGAATGTTTCGGCATAGAATGGCAACCATCTGATGGTACAGACCTCATCTGTGGGGCTTGTGTTGTCCGGTTACGAGAAGCGAGCTATTTTAAGAGGGAGATCATGGCCACCCAGGAGGCCCTCAGAGAAGCTATTGACATCAATGTGGAGGTAGATGTAAGCAGGGTAAAAACAGAAGAGAGGGAAAATGACAGCTCTGTGGAGGACACCTACGAGACAGTGGAGTATCTTGATGATGACCATGATTATGTGTTGCCCTCAAAATCGCAAAAATCTCAACCAAAGCGCAAACTCAAGTACCCTAAGAAGAAGCCGCGCTGCGAACGTAACAAGACTTACAAGCAGTACTCCCGGAGCGACCTCGAGGAGGCGTCGCGCCTGGTGAGCCGCGGCGAGCTGACGAGCCGCGACGCCGCCGCCCTGTACGGCATCCCCAGAGCCACCCTGCAGACGAAGGCCAACATGATGCTCTGTAGTGAGGAAGCCACCCTGTACGGCATCCCCAGAGCCACCCTGCAGACGAAGGCCAACACGCTGCACTGCAGTGAGGAAGTTGATGATGAAAGGAAAGCAAGCAACGAGAGGCATCATGCGTTCATAGAAGAAATCAAAAAGCTCCTCAGCTACACCAATGCTATACCGATCCGGACCAAGGTGTGCAGGTACTACTGCTTCTACTGCACCACGGATGGACCCATCTTCGATGATCCAGATGACTTGACGAACCACACCAATACAGAACACTTCCGGGAACGCATTACCAGCATCGAACGCTGCATGACACCCCAGTATGCCAATGAAGTCATCAAGCTAAACGTTACAGGGCTCCAGTGTGCCGAGTGCCTCGTACTGCTACCGGATTGGAACCAGATGTTTGTCCATTTCGCTGAGATCCACTCGATTGGCTTCGACCAAGCGTACACAAGAGTCATACCGTACGCGTTGACTCCGGAGCTGAAATGCGTGCTCTGCCACGAACCCTTCCACAACTACGGCTATCTGGACGCCCATATGAACCTACACTACACCAACCACATCTGCCACGAGTGTGGAGCCCCATTCCTGGCCATTTCCAGATTAGAGAAGCATCTCAAAGTCCACAAAGTCGGTAGCTACCCCTGCAAGATTTGCAATAAAGTGTTCACGCACGAGAAGTACAGAGCGAAGCACTGCGCATTCGTGCACACCCAATCTCTCGACACAAAGTGTCTGTATTGCCCGGAGAAGTTCCTCGGTCCAATACAGAGGCACATGCATGTTTTAGAGAAGCATGAGGACAAAGTGAAGACGATTACGTGTGAAGTGTGCGGTAAAGTCTTCACATGGAAGCCGTACTTCGACCGACATGTACGTAGAACCCATAAGGCCGAGAAGAACCATAAATGCCGGATTTGTGATAGAGCATTCCTGCTGCCTCACGAGCTGAAGAAGCATGAGAAGAAGCATTTAGGGGATCTGGTATACGAGTGCGGGGAGTGTGGTGCAGCTTTGAAAAACGTGCTGGATTTCAAGGCGCACCTACAAGAACATAAGGATGCAAAACTAGTAGGTGATATGAAATCTGAAGACTCCGAGTAA
- Protein Sequence
- MSEEITRGRCKCCLGDSELRSLWERYDVEGEEEHYGEMLKECFGIEWQPSDGTDLICGACVVRLREASYFKREIMATQEALREAIDINVEVDVSRVKTEERENDSSVEDTYETVEYLDDDHDYVLPSKSQKSQPKRKLKYPKKKPRCERNKTYKQYSRSDLEEASRLVSRGELTSRDAAALYGIPRATLQTKANMMLCSEEATLYGIPRATLQTKANTLHCSEEVDDERKASNERHHAFIEEIKKLLSYTNAIPIRTKVCRYYCFYCTTDGPIFDDPDDLTNHTNTEHFRERITSIERCMTPQYANEVIKLNVTGLQCAECLVLLPDWNQMFVHFAEIHSIGFDQAYTRVIPYALTPELKCVLCHEPFHNYGYLDAHMNLHYTNHICHECGAPFLAISRLEKHLKVHKVGSYPCKICNKVFTHEKYRAKHCAFVHTQSLDTKCLYCPEKFLGPIQRHMHVLEKHEDKVKTITCEVCGKVFTWKPYFDRHVRRTHKAEKNHKCRICDRAFLLPHELKKHEKKHLGDLVYECGECGAALKNVLDFKAHLQEHKDAKLVGDMKSEDSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00353642;
- 90% Identity
- iTF_00353642;
- 80% Identity
- iTF_00353642;