Carc025496.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coenonympha arcania
Gene Symbol
-
Assembly
GCA_036785405.1
Location
CM072081.1:4907532-4933958[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 9.9e-12 7.4e-09 36.0 0.0 1 38 16 53 16 56 0.95

Sequence Information

Coding Sequence
ATGGTGcggaattataaaaaaaagggtACGCGAACCCAGGACGTAGATGAAGACTCTATGAAATTAGCAATCGATGACGTAATAAAAGGACGGTTGTCCTTCAGAAAAGCCGCGTTGAAATACAATATCAAAACATCAACATTGCAAAGTAGAGTCAGGAAATTTAAAGCTGGTAACGGTGACAGACCTTCGCGGGTTTATCATTCTAAATTCACGAGTCTACAAGTCTTTTCCTTAGAAGAAGAGGCTCGTTTAAATGACTACTTAACCAGTTGCAGCAAGATGCATTATGGATTAACGGAAGTAGAAATTCGGAAACTCGCCTACAAATATGCGAAAGCATTGAAATTGAGATACCCAGCGAAATGGAACGAGAATCGAATGGCAGGCTTAGAGTGGATGCGTAGATATAGGGAACGAAACTCAGATGTCAGTTTGCGCCAGCTAAAAAAGACTAGCACTTCACGATCGAAGCCTGAAGACATTGCTACCAGTACTCCCATAACACCAGAGCTAACGACTTCCATTCTCCAAACTCCTGAAGACGACAATACTGGTACTTGTGAACCTTCTACTTCTGCAGCTGAGACTCAACCTGAACCTAATATAACACCAGAAGCCATAAGACCTTCTCCTACAgctgttaaaaatataaaaaccaaaCAAGGAAGAAAACTGGTTAAGTCGCGTATATGTACAGATGCAATTGaagaaaataaacaagaagAGAGTTATAGACAGAAAGAATTGGAAGTAATGGAACAAGAAAGGAATGCTAGAGCTAAAGCTATGGAACGTAGTTCAAAGGAAATTGACCCAAGACAAAAGAAAATAGAAAGCGATGTAGATTCAGAGGATTCCGAAGATACTGTAATAAGCTCGCGGGAAAGCTCAACATCTCCAGTTGATTTTGATATTGATGACGATGCTAGTGATTGTTATTTTGGTGTGACGCCGGAGAATATCGAAGACGATTGCTGTGTTTTGGGCGCTGCGGAGTTCCTAGCCACTCTAATGGGCGAGGCGGTGAGCGAAAACGTGAGCGGTGGTCAAGACAGTGACAGCGACGGCCTCATAGAAGACCCTGGGGACCTATCTGGTTACTTGGTGTTCAAAGACGCCCTCGCCACCTCAGCAGCGACCGGCGTCGGCGCAACGCAATCCGCGACCACCTCCAGATATGGCGTTGGACATAATCagGGCGAGGTGGAAAAAATCGTAATAAGAGAAGAGATCTCCGAAGAGGAAAAGAACCAGTGTCGTCTCTGCCTGAACGTCGGGAGAAGACTGCGCGAGCTCGCGGAATACGCGCccttatatagaaaactgctgTTTGGGAACTGCCCGAACACTCCAATACCTAGCTTCATGTGCGAAATGTTGGCGTGCTGGGAGTGCCGCGCGGAGCTCAGGAGGATCCAGAAGTTCCAGGACAAGGTGCGGCGAGCGAACATGGCCTTCCAAACCAATCAGAATCAAAACTGTGAAGATCTGTCAAGTCTTTGTGCTATCCTGATATCGGAAGCGACCAACCCCAATGCAGAGATCGAACCAGCCAGCACTGTGGAAGAACGTGCCAAGAAGATTAAACAGGAAGCGGTGGAAGTGGAAGAAGTGGAAGTACCAGAAGTGGAAGAACTCGCCTTGCCTGACCCTCTCGCAGGTTGTCCTGGCCAAATCGTCGAACGAACAGTAAACATAGAGTACGAACCATACACAGAACCACAGATTCAAAAAAGCATAGACGAACCAAAACTTAACGTCACAGTAGAGGCGGTGACCAGAGACAATAAAGGAAAGGCCAGGTCAAAACAAATACAAGTGAAAAGAGTCACTGATGTCTCTAATGTACCTGAACAGGTGAAGAAAAGGGCTAGATTGATGAGCAGTTCACAGGAAAAGTCACAAGGCGCGGATGACACTACGCAGACGTCACAAACCCATGACGTCACCGTCAGAGCGGACGCGCCGCTCGATTGTGACGCCATTTTCGCCAAAGTGAAGATAGAGTTCGAGGAGCTACAGAGCATCCTGTCGGATAGGAGGGATAAGGACACGTTTAAGAGCATGCAGTACAAATGTGACTCTTGCGTGCTCGGCTTTACGGATCAAAGTCGGTTGGACGATCACAATAGGAAATATCATGATGAGGACGCCGGCAGCTTCGAGTGTGACATCTGTCAGAGACGGTTCATAGACAAGCAACAGCTGCAGCCGCACCGCCGGAGCCACTTCGTGAAGTTCGCGTGCCAGCTGTGCCGGTTCGAGTGCTACACCAAGACCGGGCGCGCCGTGCACTTGACGCGACAtcgcgacgcggtgcgcggcgcggaGCCCGACGCCGTGTTGCGCCCGACGCCGTGTTGCGGTGAGACGACCCTGCAGCCGCACCGCCGGAGCCACTTCGTGAAGTTCGCGTGCCAGCTGTGCCGGTTCGAGTGCTACACCAAGACCGGGCGCGCCGTGCACTTGACGCGACAtcgcgacgcggtgcgcggcgcggaGCCCGACGCCGTGTTGCGCCCGACGCCGTGTTGCGGTGAGACGACCCTGCAGCCGCACCGCCGGAGCCACTTCGTGAAGTTCGCGTGCCAGCTGTGCCGGTTCGAGTGCTACACCAAGACCGGGCGCGCCGTGCACTTGACGCGACAtcgcgacgcggtgcgcggcgcggaGCCCGACGCCGTGTTGCGCCCGACGCCGTGTTGCGGTGAGACGACCCTGCAGCCGCACCGCCGGAGCCACTTCGTGAAGTTCGCGTGCCAGCTGTGCCGGTTCGAGTGCTACACCAAGACCGGGCGCGCCGTGCACTTGACGCGACAtcgcgacgcggtgcgcggcgcggaGCCCGACGCCGTGTTGCGCCCGACGCCGTGTTGCGGTGAGACGACCCTGCAGCCGCACCGCCGGAGCCACTTCGTGAAGTTCGCGTGCCAGCTGTGCCGGTTCGAGTGCTACACCAAGACCGGGCGCGCCGTGCACTTGACGCGACAtcgcgacgcggtgcgcggcgcggaGCCCGACGCCGTGTTGCGCCCGACGCCGTGTTGCGGTGAGACGACCCTGCAGCCGCACCGCCGGAGCCACTTCGTGAAGTTCGCGTGCCAGCTGTGCCGGTTCGAGTGCTACACCAAGACCGGGCGCGCCGTGCACTTGACGCGACAtcgcgacgcggtgcgcggcgcggaGCCCGACGCCGTGTTGCGCCCGACGCCGTGTTGCGGTGAGACGACCCTGCAGCCGCACCGCCGGAGCCACTTCGTGAAGTTCGCGTGCCAGCTGTGCCGGTTCGAGTGCTACACCAAGACCGGGCGCGCCGTGCACTTGACGCGACAtcgcgacgcggtgcgcggcgcggaGCCCGACGCCGTGTTGCGCCCGACGCCGTGTTGCGGTGAGTCGACCCTGCAGCCGCACCGCCGGAGCCACTTCGTGAAGTTCGCGTGCCAGCTGTGCCGGTTCGAGTGCTACACCAAGACCGGGCGCGCCGTGCACTTGACGCGACAtcgcgacgcggtgcgcggcgcggaGCCCGACGCCGTGTTGCGCCCGACGCCGTGTTGCGGTGAGACGACCCTGCAGCCGCACCGCCGGAGCCACTTCGTGAAGTTCGCGTGCCAGCTGTGCCGGTTCGAGTGCTACACCAAGACCGGGCGCGCCGTGCACTTGACGCGACAtcgcgacgcggtgcgcggcgcggaGCCCGACGCCGTGTTGCGCCCGACGCCGTGTTGCGGTGAGACGACCCTGCAGCCGCACCGCCGGAGCCACTTCGTGAAGTTCGCGTGCCAGCTGTGCCGGTTCGAGTGCTACACCAAGACCGGGCGCGCCGTGCACTTGACGCGACAtcgcgacgcggtgcgcggcgcggaGCCCGACGCCGTGTTGCGCCCGACGCCGTGTTGCGGTGAGACGACCCTGCAGCCGCACCGCCGGAGCCACTTCGTGAAGTTCGCGTGCCAGCTGTGCCGGTTCGAGTGCTACACCAAGACCGGGCGCGCCGTGCACTTGACGCGACAtcgcgacgcggtgcgcggcgcggaGCCCGACGCCGTGTTGCGGTGA
Protein Sequence
MVRNYKKKGTRTQDVDEDSMKLAIDDVIKGRLSFRKAALKYNIKTSTLQSRVRKFKAGNGDRPSRVYHSKFTSLQVFSLEEEARLNDYLTSCSKMHYGLTEVEIRKLAYKYAKALKLRYPAKWNENRMAGLEWMRRYRERNSDVSLRQLKKTSTSRSKPEDIATSTPITPELTTSILQTPEDDNTGTCEPSTSAAETQPEPNITPEAIRPSPTAVKNIKTKQGRKLVKSRICTDAIEENKQEESYRQKELEVMEQERNARAKAMERSSKEIDPRQKKIESDVDSEDSEDTVISSRESSTSPVDFDIDDDASDCYFGVTPENIEDDCCVLGAAEFLATLMGEAVSENVSGGQDSDSDGLIEDPGDLSGYLVFKDALATSAATGVGATQSATTSRYGVGHNQGEVEKIVIREEISEEEKNQCRLCLNVGRRLRELAEYAPLYRKLLFGNCPNTPIPSFMCEMLACWECRAELRRIQKFQDKVRRANMAFQTNQNQNCEDLSSLCAILISEATNPNAEIEPASTVEERAKKIKQEAVEVEEVEVPEVEELALPDPLAGCPGQIVERTVNIEYEPYTEPQIQKSIDEPKLNVTVEAVTRDNKGKARSKQIQVKRVTDVSNVPEQVKKRARLMSSSQEKSQGADDTTQTSQTHDVTVRADAPLDCDAIFAKVKIEFEELQSILSDRRDKDTFKSMQYKCDSCVLGFTDQSRLDDHNRKYHDEDAGSFECDICQRRFIDKQQLQPHRRSHFVKFACQLCRFECYTKTGRAVHLTRHRDAVRGAEPDAVLRPTPCCGETTLQPHRRSHFVKFACQLCRFECYTKTGRAVHLTRHRDAVRGAEPDAVLRPTPCCGETTLQPHRRSHFVKFACQLCRFECYTKTGRAVHLTRHRDAVRGAEPDAVLRPTPCCGETTLQPHRRSHFVKFACQLCRFECYTKTGRAVHLTRHRDAVRGAEPDAVLRPTPCCGETTLQPHRRSHFVKFACQLCRFECYTKTGRAVHLTRHRDAVRGAEPDAVLRPTPCCGETTLQPHRRSHFVKFACQLCRFECYTKTGRAVHLTRHRDAVRGAEPDAVLRPTPCCGETTLQPHRRSHFVKFACQLCRFECYTKTGRAVHLTRHRDAVRGAEPDAVLRPTPCCGESTLQPHRRSHFVKFACQLCRFECYTKTGRAVHLTRHRDAVRGAEPDAVLRPTPCCGETTLQPHRRSHFVKFACQLCRFECYTKTGRAVHLTRHRDAVRGAEPDAVLRPTPCCGETTLQPHRRSHFVKFACQLCRFECYTKTGRAVHLTRHRDAVRGAEPDAVLRPTPCCGETTLQPHRRSHFVKFACQLCRFECYTKTGRAVHLTRHRDAVRGAEPDAVLR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-