Carc013887.1
Basic Information
- Insect
- Coenonympha arcania
- Gene Symbol
- -
- Assembly
- GCA_036785405.1
- Location
- CM072068.1:697873-708391[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.3e-08 2.5e-05 24.7 0.0 2 30 7 35 6 40 0.93 2 17 3.3e-08 2.5e-05 24.7 0.0 2 30 49 77 48 82 0.93 3 17 3.3e-08 2.5e-05 24.7 0.0 2 30 91 119 90 124 0.93 4 17 3.3e-08 2.5e-05 24.7 0.0 2 30 133 161 132 166 0.93 5 17 3.3e-08 2.5e-05 24.7 0.0 2 30 175 203 174 208 0.93 6 17 3.3e-08 2.5e-05 24.7 0.0 2 30 217 245 216 250 0.93 7 17 3.3e-08 2.5e-05 24.7 0.0 2 30 259 287 258 292 0.93 8 17 3.3e-08 2.5e-05 24.7 0.0 2 30 301 329 300 334 0.93 9 17 3.3e-08 2.5e-05 24.7 0.0 2 30 343 371 342 376 0.93 10 17 3.3e-08 2.5e-05 24.7 0.0 2 30 385 413 384 418 0.93 11 17 1.3e-14 9.7e-12 45.3 0.0 2 45 427 471 426 471 0.96 12 17 1.2e-17 8.9e-15 55.0 0.0 1 42 478 520 478 521 0.95 13 17 3.7e-09 2.8e-06 27.8 0.1 17 42 524 550 522 551 0.94 14 17 3.7e-09 2.8e-06 27.8 0.1 17 42 554 580 552 581 0.94 15 17 3.7e-09 2.8e-06 27.8 0.1 17 42 584 610 582 611 0.94 16 17 3.7e-09 2.8e-06 27.8 0.1 17 42 614 640 612 641 0.94 17 17 3.7e-09 2.8e-06 27.8 0.1 17 42 644 670 642 671 0.94
Sequence Information
- Coding Sequence
- ATGGCCACGCCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGCACTCTGTACGGGCGGTGTAAGCGGGAAGGCATCGAGTTGTCTCGCTCCAACCCGACGCCGTGGTCGGAGGACGCGATGGGAGAGGCGCTAGAAGCCGTCCGGGTGGGTCAGATGTCCATCAACCAGGCGGCGATCCACTACAACCTGCCCTACTCGTCGCTGTACGGCCGCTTCAAGCGCTGCAAGtaccagcccgcgccgatgtccatcaaccaggcggcgatccactacaacctgccctactcgtcgctgtacggccgcttcaagcgctgcaagtaccagcccgcgccgatgtccatcaaccaggcggcgatccactacaacctgccctactcgtcgctgtacggccgcttcaagcgctgcaagtaccagcccgcgccgatgtccatcaaccaggcggcgatccactacaacctgccctactcgtcgctgtacggccgcttcaagcgctgcaagtaccagcccgcgccgatgtccatcaaccaggcggcgatccactacaacctgccctactcgtcgctgtacggccgcttcaagcgctgcaagtaccagcccgcgccgATGTCCATCAACCAGGCGGCGATCCACTACAACCTGCCCTACTCGTCGCTGTACGGCCGCTTCAAGCGCTGCAAGTACCAGCCCGCGCCCaaCCAACCGACGCAACAAGAAATACCGCCGCACGCCGACGCAGAAAGCCAACCACAGGAGCTGTATTACCAGGCGATGTCGCACACAGACGCGATGCTGACCGACGATCACATACAACACCCCTTCTTTAACGACATTGAGACGCCGCACCTTCAGTACGCACCGATGTACTACACGCACTGCAATGTGACCAGCTGA
- Protein Sequence
- MATPWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQPAPMSINQAAIHYNLPYSSLYGRFKRCKYQPAPMSINQAAIHYNLPYSSLYGRFKRCKYQPAPMSINQAAIHYNLPYSSLYGRFKRCKYQPAPMSINQAAIHYNLPYSSLYGRFKRCKYQPAPMSINQAAIHYNLPYSSLYGRFKRCKYQPAPNQPTQQEIPPHADAESQPQELYYQAMSHTDAMLTDDHIQHPFFNDIETPHLQYAPMYYTHCNVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -