Carc013889.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coenonympha arcania
Gene Symbol
-
Assembly
GCA_036785405.1
Location
CM072068.1:711663-723511[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 1.6e-10 1.2e-07 32.1 0.0 4 39 177 213 174 217 0.89
2 31 2.5e-10 1.8e-07 31.6 0.3 2 39 229 266 228 269 0.92
3 31 7.5e-08 5.6e-05 23.6 0.0 2 30 284 312 283 317 0.93
4 31 7.5e-08 5.6e-05 23.6 0.0 2 30 326 354 325 359 0.93
5 31 7.5e-08 5.6e-05 23.6 0.0 2 30 368 396 367 401 0.93
6 31 7.5e-08 5.6e-05 23.6 0.0 2 30 410 438 409 443 0.93
7 31 7.5e-08 5.6e-05 23.6 0.0 2 30 452 480 451 485 0.93
8 31 7.5e-08 5.6e-05 23.6 0.0 2 30 494 522 493 527 0.93
9 31 7.5e-08 5.6e-05 23.6 0.0 2 30 536 564 535 569 0.93
10 31 7.5e-08 5.6e-05 23.6 0.0 2 30 578 606 577 611 0.93
11 31 7.5e-08 5.6e-05 23.6 0.0 2 30 620 648 619 653 0.93
12 31 7.5e-08 5.6e-05 23.6 0.0 2 30 662 690 661 695 0.93
13 31 7.5e-08 5.6e-05 23.6 0.0 2 30 704 732 703 737 0.93
14 31 7.5e-08 5.6e-05 23.6 0.0 2 30 746 774 745 779 0.93
15 31 7.5e-08 5.6e-05 23.6 0.0 2 30 788 816 787 821 0.93
16 31 7.5e-08 5.6e-05 23.6 0.0 2 30 830 858 829 863 0.93
17 31 7.5e-08 5.6e-05 23.6 0.0 2 30 872 900 871 905 0.93
18 31 7.5e-08 5.6e-05 23.6 0.0 2 30 914 942 913 947 0.93
19 31 7.5e-08 5.6e-05 23.6 0.0 2 30 956 984 955 989 0.93
20 31 7.5e-08 5.6e-05 23.6 0.0 2 30 998 1026 997 1031 0.93
21 31 7.5e-08 5.6e-05 23.6 0.0 2 30 1040 1068 1039 1073 0.93
22 31 7.5e-08 5.6e-05 23.6 0.0 2 30 1082 1110 1081 1115 0.93
23 31 7.5e-08 5.6e-05 23.6 0.0 2 30 1124 1152 1123 1157 0.93
24 31 7.5e-08 5.6e-05 23.6 0.0 2 30 1166 1194 1165 1199 0.93
25 31 7.5e-08 5.6e-05 23.6 0.0 2 30 1208 1236 1207 1241 0.93
26 31 7.5e-08 5.6e-05 23.6 0.0 2 30 1250 1278 1249 1283 0.93
27 31 7.5e-08 5.6e-05 23.6 0.0 2 30 1292 1320 1291 1325 0.93
28 31 7.5e-08 5.6e-05 23.6 0.0 2 30 1334 1362 1333 1367 0.93
29 31 7.5e-08 5.6e-05 23.6 0.0 2 30 1376 1404 1375 1409 0.93
30 31 7.5e-08 5.6e-05 23.6 0.0 2 30 1418 1446 1417 1451 0.93
31 31 0.00076 0.57 10.8 0.7 2 24 1460 1482 1459 1483 0.92

Sequence Information

Coding Sequence
ATGCCCGGATCAGAAAGCCTGCAAGTGAAATGCGAATCGCCTTCTGAGGATGAAGAGAGTAATTCAGAATTCGTACATTCTTTTGCTCATCGGCTTCCAACAGAATACGTGCCTCCGAGTATAAAATTGGAACCGAACTCGCAAGTAGACGAAAATGCATCATCGAACCTTTTGCATCATTTGCAGTGCGTGGAAGGCGCCCTGGAGGAGCTGGTACCGGCGCCGGCGGGGCCCGCAGCCACGCCCGTGTGCGAGCAGCCCCCGGCCACCTATGAAGCCTCCTTCGCGACCCTCGAGCCTGCCTCCCGCGCTGACACTCTGGGTTCATCACTGATCGACAGGCATATAAAGATGATGACTGCGAACGAAGTGGCCGACTCTTCAGACTTCGTACCGCTCATGGCTATCAAGGATGAGCCATCGTCTGAAGGAGAGCAGCAACACCTGAGTGGAGACGACACTAGCGACTCCAACGGGGCGCCACAGGAGTCGGCGAGCCGCGGCAGTCCCAAGAGCTGGACCCAGCAGGACATGGAGAAGGCGCTGGAAGCCTTGAGGAAGCATCACATGAGCTTGACTAAGGCTTCGGCGACATACGGTATACCGTCAACGACGCTGTGGCAGCGAGCGCACCGGCTGGGCATCGACACTCCTAAGAAGGAAGGCGCCTCTAAGTCCTGGAGCGAGGCAGACCTGCGGGGAGCGCTGCACGCGTTGAGAGCCGGCGCCATTTCCGCCAACAAGGCCAGCAAGGCGTATGGTATCCCGAGCAGTACTCTGTACAAGATAGCTCGTCGCGAAGGCATCCGGCTGGCGGCGCCCTTCAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGActtggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGActtggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTCGGGATACCCACGGGTGAGTTGCTTGACAACGCCGCTCCCACGGCGTGGCGGCGAGCGGacctggagcgcgcgctgcaggcgatacgctgcggcgcggcctccgTGCAGCGAGCCGCCACGCAGTTACTTGCAGCGCTTGAAGCGGCCGTACAGCGACGAGTAGGGCAGGTTGTAGTGGATCGCCGCCTGGTTGATGGACATCTGACCCACCCTGCACATTAG
Protein Sequence
MPGSESLQVKCESPSEDEESNSEFVHSFAHRLPTEYVPPSIKLEPNSQVDENASSNLLHHLQCVEGALEELVPAPAGPAATPVCEQPPATYEASFATLEPASRADTLGSSLIDRHIKMMTANEVADSSDFVPLMAIKDEPSSEGEQQHLSGDDTSDSNGAPQESASRGSPKSWTQQDMEKALEALRKHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQFGIPTGELLDNAAPTAWRRADLERALQAIRCGAASVQRAATQLLAALEAAVQRRVGQVVVDRRLVDGHLTHPAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-