Basic Information

Gene Symbol
stc
Assembly
GCA_947389925.1
Location
OX376696.1:1233457-1245350[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 1 3.1e+04 -4.8 2.1 14 19 815 820 815 820 0.88
2 11 0.075 2.3e+03 -0.5 0.5 4 10 1575 1581 1574 1583 0.95
3 11 9.2e-06 0.29 12.0 18.1 3 19 1588 1604 1577 1604 0.88
4 11 5.8e-07 0.018 15.8 13.5 3 18 1642 1657 1640 1658 0.91
5 11 2.3e-07 0.007 17.1 20.4 1 19 1698 1716 1698 1716 0.98
6 11 6.6e-05 2.1 9.2 16.3 4 18 1764 1778 1757 1779 0.86
7 11 0.028 8.6e+02 0.9 11.3 1 11 1819 1829 1819 1840 0.94
8 11 5.2e-10 1.6e-05 25.5 15.5 1 18 1846 1863 1846 1864 0.97
9 11 1 3.1e+04 -7.9 9.9 4 18 1905 1920 1903 1921 0.73
10 11 2.9e-08 0.00091 20.0 12.0 1 16 1957 1972 1957 1980 0.90
11 11 2.5e-07 0.0077 17.0 12.3 1 19 1990 2009 1990 2009 0.96

Sequence Information

Coding Sequence
ATGACAAAGAGACAAAACGACACTGCGAGATCAGAGAAGATCGTCCGCCCGGGCTCGAACTCGAAGGAGATTCCGCAGATCCAGCAGGAGATCCCCAGGTCCACGGAGCACAGCAGACGGAAAGCCACAGACGGAACAACAGCAGACGCAATGACACAAGAGCTGGCCGAGAGCGGATTCGCGGCGGGGAATTCGGGCTCTAGTTCGGTTTCGGCTTCGATCTCGCGCTCGGATTCGGACTGCGACTCGGACTCGGGCTCGGGCCTGGCCGCCGACCACGGCTCAGGCCACGGCCGGGATTCGGGCTTGGATTCGCTCGGCCGTCCGGGCGCCGCTCGTTGGCCAAGTAGAGCGCCGTCGATCGAGTCCGGTCCGGTTCGGCTGGGTTGGGCTGGGTTCGGCGGGTCGGGTCGGGTCGGGCCGGGGGAAGTCGCGGACAATCACATCCAATTCGGGATTCGACTTCAACAACCGCGCAAGGACGCCAGGAACCCAGTGGCTGAGGGCGCCAGGACTCGAGTCGCTTCGGACCGAGGCATGAACGATCTGAGAATGGGCTTCAAGCACGCCATTCTCCAGCGCATGCAGGGCTACGAGACGACGGCGATGGCATCGATGCCGACGACGACGGCCAAGTCGCCGGCGGACCCGGGGCTGCGACCGACCGCGAGATCCTGCACACGATCGCCCAGCACGAACGCCATCAGCAGCAGCCCGAAGCCGACCACGGGCGGGCCGGGACTGCAGCAGCTGCAGCCGCCACAGGTCACGGACTTCAGCATCGAGCGCATCCTGGGCGCGCGATCGCCGCGGAGCCCCCCGCAGACCACGCCCCTGCCGCGCCCCCAGACGCCGGCGCGCAGGAACTCCCCGGCCTACCAGCCGCCGACTGGGGACATCCTCGACCTGTCCAAGTCCAGTGCCACGCCCCTGGGCACCGCCCCGTCCGCCTACGCCGCGTTGTCCTCGTCAGTGGCCTCGGCCTCCTCCTCGTCGTCGTCGGCGTCGTCATCGTCCTACGCGGCCTTCCATCAGGACTTCCTGGCAGCGGCCGCCGCGGCGAACGCGACCAAGTTCTACGCCCAGTTCTTCCCGCAGATGTTCTCGCACGTGGTGGGCGTGGCTCCCACGGTGGGCGGCTACGCTCACGCCCTGCCGACGGGCTACGGCGCCAAGCGCTACTTCGCGCCCTACGTCCTGAAGCCGTCGGCGACTCCAATGGGCTCGACCTCAATTGGCTCCCTTGGATCCAGCTCGATCGGGTCAACCTCCATTGGCTCCACCTCGCTTGGCTCGTCGTCCTCACGGCTGTCGGCGAACCCCACGCTGGCGCCGCCCTCCGCCGACGTCCTGCGGCCGAAGCTGTGTCCGCGCGACTGCTCCGAGTGCTCCCTCTACTACCACAGCCCCCTGCCCGTGGCGCTGCccgcctcgctgatctccgccgtctccgtctccgccacagccaccgccacggccgccgccgtcgcctcgtcgaccacgctgacgacggcgacggcgacggcgTCCTTTCTGAAGGCGAAGCCCGCCGAAGGACTCCTGATGCCGACCATGTCGAGCGGCTCCCCGGCCTCAGCCGGCGCCTCGATGATCTCCCTGACCACGGTCACCAACTTGAACCTCACCACGGCCACGGCCACGGCGTCGGCCACCAAGAGCTCGGCCACCCAGCTGCTGGACCCGACGCTCGGCCCCCTcatccaggacgagatcagctacaagtgcaggatctgcgacaaggtcttcggctgctcccaaacgctgcagCGGTCCTCCGAACGGAGTTCAATCGACGCGATCGTCAGTGAGTCGCCGAGTTCGGCGCCACCGCCACCGTCGCAGAGGTGGAGCCCGAACGGCCTCCTCGGGGCGGAGTCACGAACCGGTTCCACTTCGCTCACTCGATCTCCCTCGCTCTCGCTCTCCTCGCGCCCGCCGCCGCCACGACGGCGAGGTGCCAAAgcccacgagcgcacccacaagtcgccgcgctacgagtgctcggactgcggcaagggcttctcccagctgcgcaactacaagtaccacctgtcggtgcaccgcggcacgaaggagttcgcggccgagtgccccgagtgcggcaagaccttcaacgacaagggctacctcagcagccacatgaagatccaccgcaacaagaaggagtacgagtgcccctactgccccaagtcgttcaaccagcgcgtcgccttcaacatgcacgtccgcatccacaccggcgtgaagccgcacaagtgcgccgagtgcggcaagcggttctcgcggaagatgctcctcaagcagcacatgcggacccacagcggcgagaagccctaccagtgctccgtctgcgggaagtccttcgccgaccgcagcaacatgacgctccaccaccggctccactcggGCATCaagccgttcaactgcccgatctgcccgaaggccttcaccaagaagcaccacctgaagacgcacctgaactaccacaccggctgcaagccctacgtctgcccccacccgaactgcaaccaggccttcacacagtccagcaacatgcgcacacatgccaagaaatgTCAGTACAGACCGTTACAACTGTCATTTCCGGAGACGGCCATAGCGACGGCAGCGCCAACGACAACGACGACGTCGATTGGCAGCGCAGCAACAACAATGCTCACGCCATCGGTTGCCGCATCGCCGAACCTGGTCTTCCCCGCCCCCCACACGATGGCGGTGCATCTGCCAACAGCCCACGGCGTCGCGGCGTCGTCAACAACTACGTCACCGACGTCCTCCTCGTCGGCAGCGATCTCGGCCGGCATTCGGATGCTGTCGGCGGCGTCGTTCGGCTCGCAGATGCCGACGCTGCCGTCACTTCCGCCCGCCCAGCAGCAGCTCGTGGCGTCGCTGCACGCCAGCAACACCATCGCTAACACTGAGGGCGGCCACTACAACATGTCAGCGGAGTCTCCATCACAGCAGACGGCAAAGCAACCGCAGCAGCAGCCAGCGTCCCAGCTCTGGCAGGATTTCGGAGATGTCGCTGTCGCCAGCGTGGGCCGCGGCCTCTCCTCGGGCGCGACGTTGTCGTCGTCGTCCGCCGGGACTGCTAGTCAATCCACCCGCAGCAACAACAACAATAACAACTACGTAGACTTCAATCAATTCATTCTGCAACATGATTTTCTCGGAAATTCGCGCCACGGTGGAAACAGTTCCAGCGGCAACCCAACCATCTTACGCAACGGCACCACCACTGCGGGCTCCAACTGCGGCGGGCTCTTCGGGGGCCACACGTTTTTTAACAACTCGACTTCGAACGGCCTGGACGATTATCGTCAGTCGACGTCAAATTTCTTCAATACGAACTCTTCCTCGAACCTTTTTCCATACAACAACGAGATCGCTAGCAACAACTTCAACATAACCGGGAGCAACAGCATCAGCAGCAGTAACACCATCTCCTCATCCTCCTATAACAACACCAAGTCGGTCGCGCCTAGTAATCTGTACGAAAACCTCTACACGCCGTTCGGCAACAGCAGCAACATCGGCGGCACCACCTACTTTGCGAATCCCTTCGCCACTGGCTTCGATTTCGGCGCTGTGACTTCGGCGTCCAACCTGCATGCCACCGCACCGGAATTTGTGCCACGCTTTACGAATCTTTCGTTGAACGAAACTGACGTCGGTGGCGGCGATGGTTCCAAGGCAGGATCGCCACAAGTGAATAAAATCGTCGATAGTTCCAATAACATTGAAACATCTACCATCGGAGACTACAAACATTTTGAGCAAAAACCGAATAGAAATTTCGTATGTGACGGCGATAACTCGAATATAGACAACAATTTGGAAGCCAGCAGTTCCACTGACAGCAGCCTCAAGTCGAAATCATCGTCGGGTTCACTACGGGCGTCAACGTCCTCGGGCGCCATCGCACGATCTTCCGGCTCCAATAACAAACCGACACCGAATCAAAACAATCAACAAAGCAACAACAACCACCAGAGCAACTATAATAGCAATTATTCAAATCAGCGTTCCGATTCGCGCTCTTCCAATGGCTTCACCAACGGTCACGACTCATCCAACTCGAATGCCGATAAGTCGGCTTCTCGCGATCGCGATCAGCGTCGCTATCAGAACGGTGGGCGACGATCCATGGATTACCACGAGCGCGAGGATCGGTACGAGCGGTCGGAGCGCGGTGGCTCCAGTCACGGACAGCGAATAAACCATCGCGATCGCTACGACAACCATCGCAGCAACAAGCGTCGTGATGATTGGAATCGCAATCGGGACCGCATCAATGGATATCGTGTGGAGGAGAAATATTCATCGGACAACGGAAAGGACAGTCCACTGCCATCACCCGAAAAGAAATCACCGAAGAAAATCTATCCGGAGAATGAGAAACTATCGCAGCGTGAGAAACTCATTCGGGACATCGAGACCCGGCGACTCGAGTGTGCCGTCTGTGTGGAGCCCATTAAGGCCCATCACTCCGTTTGGAATTGCAATAACTGCTACCTCATTCTTCACTTGCATTGCATCACCAAGTGGGCATCCAGCTCGAAATCGGACGACGGCTGGCGTTGTCCGGCTTGCCAGAATGTGGTCAAAGAAGTACCGCGCGACTATTACTGCTTCTGTGGCAAGGTCAAGAATCCTCCGTACACGCGCCAGGACATTGCCCACTCGTGTGGCGAGGTGTGCGGCCGCGTCGAAGGCTGTGCACACGCCTGCACCTTGCTCTGCCATCCTGGACCGTGTCCTCCGTGTCAGGCGAATGTGAAGCGCGAATGTGGTTGTGGCAAGACAACGAAAGTCATGCAATGCTGTCTGAAGGAACCCATCGAATGTGATGCAATCTGTAGCAAGTTGCTCAACTGCGAGTTGCACACGTGCGCCGATAAATGCCATCCGGGCAAGTGTCAGCCGTGCGAGGAGAAGGTTAACCAGAAGTGCCACTGCTCCAAGCAGGAGCGCCAAGTCGCCTGCACACGCGACTCGCACGAGAAGCACACCTATTCATGCGGCAAGCCGTGCGGACGCGATCTCGCCTGTGGCAACCACAAGTGTAAGGACTGTTGCCACCCGGGCGAGTGTCGTCCGTGCAAGCAGAGCCCCGAGGTGGTCACCTCGTGTCCCTGCGGCAAGATGCCGGTCGTGCAGGGGCAGCGCACGTCTTGCCTTGATCCGATACCGGTTTGCGAAGGTGTCTGCGGTCGGACCCTACGCTGCGGCAAAGCAGCTCATCCTCATCACTGCACAAGTAAATGCCATCTGGGCAATTGTCCGCCATGCAACAAGCAGACCGCCATTAAGTGTCGCTGCGGCCACATGGACCAGATGATCAAATGCCGCCAACTCTCGACGCGCGCCGACGATGCTCGTTGCAAGAAACGTTGCGTTAAGAAGCGATCATGCGGTAAGCACAAGTGCAATCAGGAGTGCTGCATCGACATCGACCACATCTGTCCGCTGCCCTGCAACTACACGCTGTCGTGTGGAAAGCACAAATGCGACCAACCCTGCCATCGCGGCAACTGTCCGCCATGTTATCGCTCGTCCTTCGAGGAGCTCTACTGCGAATGCGGCGCCGAGGTGATCTACCCGCCGGTGCCGTGCGGCACCAAGCGCCCGGTCTGCAAGCGGCCCTGCTCGCGCTCCCACCCGTGCGATCATACGCCGCAGCACAATTGCCACTCGGCGGCCACCTGTCCGCCGTGTATGATCTTCACTACGAAGTGGTGCTTTGGCCAGCACGAGCAACGTAAAACCATTCCATGCTCGCAGGAGAGCTTCAGCTGCGGGCTGGCGTGCAACAAACCACTGCCATGTGGACGTCACAAGTGCATTCGGTCGTGCCACGAGGGCCCCTGTCAGCAGTCGCAGGGCGAGGTGTGCAAGCAGAGTTGCACGGCGTTGCGTCCGTCGTGCGGACACAAGTGCATGGCGGCGTGCCATGACGGCGATTGCCCCGAGACGCCCTGCAAGGAAATGGTTGAGGTTCAGTGCGAGTGCGGAAATCGCAAACAGATGCGCTCCTGCCACGACTTAGCGCGCGAATACAGTCGCATCGCCACCGCCCAGTTGGCCTCGTCGATGGCCGAGATGCAGCGCGGCAACTACATGGAACTGAGTGAGATTTTGGCACCGGTCAAAACGAACAAAACTAACAAAACTCTTGATTGCAACGAGGAATGTCGCATGGTCGAACGCAATCGTCGTCTTGCCATTGGCCTACAGATTCGCAACCCCGATCTGCCGCAGAAGCTACTGACCAAATATTCCGATTTCATACGCAACTTTGCCAAACGCGATCCGGTCTTGGTGCGTTCGATACACGATGCGTTGACTAATCTGGTCAAGTTGGCTAAGGAGAGCAAGCAGAAGTCGCGCAGTCACTCGTTCCCTACTATGAATCGAGAGAAGCGTCAGCTGGTGCACGAGATGTGCGAGATGTTTGGCGTCGACTCGGTGGCCTACGATGCGGAGCCGAATCGCAATGTCGTAGCCACGGCACACAAGGATCGGTCGTGGCTTCCAGCCACCAGTATCATCGACGTCATGCAGCGCGAATCTGGACAGCGACGTGTTCCGGTGCCAAGCAACAACGCTTGGGGAATCAAGAGATAG
Protein Sequence
MTKRQNDTARSEKIVRPGSNSKEIPQIQQEIPRSTEHSRRKATDGTTADAMTQELAESGFAAGNSGSSSVSASISRSDSDCDSDSGSGLAADHGSGHGRDSGLDSLGRPGAARWPSRAPSIESGPVRLGWAGFGGSGRVGPGEVADNHIQFGIRLQQPRKDARNPVAEGARTRVASDRGMNDLRMGFKHAILQRMQGYETTAMASMPTTTAKSPADPGLRPTARSCTRSPSTNAISSSPKPTTGGPGLQQLQPPQVTDFSIERILGARSPRSPPQTTPLPRPQTPARRNSPAYQPPTGDILDLSKSSATPLGTAPSAYAALSSSVASASSSSSSASSSSYAAFHQDFLAAAAAANATKFYAQFFPQMFSHVVGVAPTVGGYAHALPTGYGAKRYFAPYVLKPSATPMGSTSIGSLGSSSIGSTSIGSTSLGSSSSRLSANPTLAPPSADVLRPKLCPRDCSECSLYYHSPLPVALPASLISAVSVSATATATAAAVASSTTLTTATATASFLKAKPAEGLLMPTMSSGSPASAGASMISLTTVTNLNLTTATATASATKSSATQLLDPTLGPLIQDEISYKCRICDKVFGCSQTLQRSSERSSIDAIVSESPSSAPPPPSQRWSPNGLLGAESRTGSTSLTRSPSLSLSSRPPPPRRRGAKAHERTHKSPRYECSDCGKGFSQLRNYKYHLSVHRGTKEFAAECPECGKTFNDKGYLSSHMKIHRNKKEYECPYCPKSFNQRVAFNMHVRIHTGVKPHKCAECGKRFSRKMLLKQHMRTHSGEKPYQCSVCGKSFADRSNMTLHHRLHSGIKPFNCPICPKAFTKKHHLKTHLNYHTGCKPYVCPHPNCNQAFTQSSNMRTHAKKCQYRPLQLSFPETAIATAAPTTTTTSIGSAATTMLTPSVAASPNLVFPAPHTMAVHLPTAHGVAASSTTTSPTSSSSAAISAGIRMLSAASFGSQMPTLPSLPPAQQQLVASLHASNTIANTEGGHYNMSAESPSQQTAKQPQQQPASQLWQDFGDVAVASVGRGLSSGATLSSSSAGTASQSTRSNNNNNNYVDFNQFILQHDFLGNSRHGGNSSSGNPTILRNGTTTAGSNCGGLFGGHTFFNNSTSNGLDDYRQSTSNFFNTNSSSNLFPYNNEIASNNFNITGSNSISSSNTISSSSYNNTKSVAPSNLYENLYTPFGNSSNIGGTTYFANPFATGFDFGAVTSASNLHATAPEFVPRFTNLSLNETDVGGGDGSKAGSPQVNKIVDSSNNIETSTIGDYKHFEQKPNRNFVCDGDNSNIDNNLEASSSTDSSLKSKSSSGSLRASTSSGAIARSSGSNNKPTPNQNNQQSNNNHQSNYNSNYSNQRSDSRSSNGFTNGHDSSNSNADKSASRDRDQRRYQNGGRRSMDYHEREDRYERSERGGSSHGQRINHRDRYDNHRSNKRRDDWNRNRDRINGYRVEEKYSSDNGKDSPLPSPEKKSPKKIYPENEKLSQREKLIRDIETRRLECAVCVEPIKAHHSVWNCNNCYLILHLHCITKWASSSKSDDGWRCPACQNVVKEVPRDYYCFCGKVKNPPYTRQDIAHSCGEVCGRVEGCAHACTLLCHPGPCPPCQANVKRECGCGKTTKVMQCCLKEPIECDAICSKLLNCELHTCADKCHPGKCQPCEEKVNQKCHCSKQERQVACTRDSHEKHTYSCGKPCGRDLACGNHKCKDCCHPGECRPCKQSPEVVTSCPCGKMPVVQGQRTSCLDPIPVCEGVCGRTLRCGKAAHPHHCTSKCHLGNCPPCNKQTAIKCRCGHMDQMIKCRQLSTRADDARCKKRCVKKRSCGKHKCNQECCIDIDHICPLPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKRPVCKRPCSRSHPCDHTPQHNCHSAATCPPCMIFTTKWCFGQHEQRKTIPCSQESFSCGLACNKPLPCGRHKCIRSCHEGPCQQSQGEVCKQSCTALRPSCGHKCMAACHDGDCPETPCKEMVEVQCECGNRKQMRSCHDLAREYSRIATAQLASSMAEMQRGNYMELSEILAPVKTNKTNKTLDCNEECRMVERNRRLAIGLQIRNPDLPQKLLTKYSDFIRNFAKRDPVLVRSIHDALTNLVKLAKESKQKSRSHSFPTMNREKRQLVHEMCEMFGVDSVAYDAEPNRNVVATAHKDRSWLPATSIIDVMQRESGQRRVPVPSNNAWGIKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00352594;
90% Identity
iTF_00352594;
80% Identity
iTF_00352594;