Cpil001649.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coelopa pilipes
Gene Symbol
Rreb1
Assembly
GCA_947389925.1
Location
OX376700.1:17568452-17574525[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.047 13 7.3 0.8 1 21 256 276 256 278 0.95
2 13 0.00015 0.041 15.1 0.2 1 23 288 310 288 310 0.98
3 13 1.4e-06 0.00037 21.5 4.1 1 23 316 338 316 338 0.98
4 13 0.24 64 5.1 3.6 2 19 569 586 569 586 0.97
5 13 0.1 27 6.2 0.2 1 20 632 651 632 653 0.81
6 13 0.0041 1.1 10.6 0.1 1 23 808 830 808 830 0.97
7 13 1e-05 0.0028 18.8 1.3 1 23 840 862 840 862 0.99
8 13 0.00038 0.1 13.9 2.0 1 23 868 891 868 891 0.97
9 13 0.0014 0.36 12.1 2.0 1 23 1238 1261 1238 1261 0.95
10 13 3.9e-05 0.011 17.0 0.3 2 23 1583 1604 1582 1604 0.97
11 13 0.066 18 6.8 6.3 1 23 1610 1633 1610 1633 0.97
12 13 0.0038 1 10.7 0.5 3 23 1821 1841 1819 1841 0.96
13 13 0.00064 0.17 13.2 4.8 1 23 1847 1869 1847 1869 0.99

Sequence Information

Coding Sequence
ATGCTTAGGACAGCCACCACAGCAACTACAGCCCCAGTGGCGAAGTCCACAACGTCCATATCTCAGGAACCAACACAGATAGCAGATGACGAACACAGCCGCGACGCTCCCATTAAAATGGAACGCCGCGACTCCACCACGTCTGAGTCCTCCCTAGAGCACTTGGATCTGGGCCGCACACCAAAGAAGCTCAACGTCCTCTCCTCGGCCACGTCCACGCCCCATGTGGGCAACGGCAGCAGCAACGCCAAGAGCTCAGCCAGCAGCGTCGCAGAACCCGCCTCCCAGGATACCATTGAAAGTCTGAAGCCCCAACGCCAATTGCTCCATCACGACTCCGACGAGGCGAACGACTATGACGACGAGGAGTCGGCTGACGAAAAACTGAACTCCTCCCGACCTCACCGCCATCACCACCACAAGCGACGGAGTAGTGGTCGGCTGGACAAGCGGAGTGTTCAGCTGGAGCTGAACGCGGAAAACCCCAACTCCTTGCGCAAGAAATTTCGCTTCAACCGCAGCGCCGCCGATGCCAATTGCGGGGGCAACAACGAGTCGGGCTTCGTCGACGGGAGCTCCAGCTCCAGCCAGTTGCTGAACGCGTCGACGACCTCCCAGGTCTCAGTTCCTGCCACGCAGCAGGCCCATCATTCCCCGCGAACGTCCGGTTCGCAAAGCTCGTCGGCGTCCTCCTCGCCCCATGGCGCGGACGCGTCCACGGCCTCGAGCCCGGAGTCTGGCCTCGGAGAACGCGACGACATGAAGTTCGTGTGCCCCATATGCGAGGACGTGTCTGCCACGCCGCACGAGTTCACCAACCACATTCGCTGCCACAACTACTCCTCCGGCGACACCGAGAACTTCACCTGCCGCATTTGCTCCAAGGTTCTGTCGTCTGCCTCCTCcctcgatcgccatgtgctcgtccacacgggcgagcggcccttcaactgcaaatactgtcctctcacgttcaccaccaacggcaacatgcaccggcacatgcgtactcacaagcagcatcagcacaatcaccatcatcgccggaactcaaatggaacaGCGGCTAAGCATTCCACCGCGACTCAGAGCGCCGCAGCAGCTGGCACAGTGCCGCCGACGCCTGCCTCCACCGGCGCGCAATTAACCAATGGCGTCGGCGGCGAAGGTGTGAAAGCAGCGGCTGCTCCGGGGGCGCCCACGCCAACGGGAGCACCCAACGGCGCAGGTGCTAATGGCAGACGCTTcaacggtggcggtagtggcgggggcgccgtagaaagttacgaaagcgatggtggttgctccacggattcatcaagtgccatcagccgaagctcaaataatcacaacaataacaatattaaaactaacaataacaataacaacattaatattaacaacaacaacaacaataacaacaataacaagaccatgaacacgagcaacaatttcaaacgcaaaaactgcgataacctggacgaagatATTACGTTGATGAAGCGACGCGTGAAGACCACTATAAACAACAACACGATCGGAGCCAGCGACGAACACCACTTCGAAACGGGATCGGACGCTGCCGACGAGCAGGCTTCGCAGCCGCATTGGCAGCAGCAGTGTCCTGTGTGCAATGCCAGCGACTTCGACTCCGTGCTTGCGCTGAGCGCCCATATGGACAGTGAGCATTGCGACATACCTGCCAAGTGCCGCCATTGTGACGTGGTGTTCCACACACACCGCCAGCTGAACGTCCACCCATGCAGCAGTAGAAGCAAGATAACGGCGGGCTTCAAGGACCTCACGTTTGTCGACTTTTCTAGTGAGAAATTCCCCTTGATCGCCAAGTCCCTGTGCGAGCAAAGTCTACGATCCGCCGTGACCAGCCAGAAATTCGAGTGCCAGAAGTGCGGGCGCGCCTTTCCCTGCGCCAGCGCCGTGGAAATGCACGAGAGGGAGTGCCAGCTGCCACTGAAGCTCTTTGGCTTTGCCGAAAACGCCCCCCGCATGAAGCAGAGGAGTGTCAGTGAGAATTCAGGTTGTCTGGAAGAGGGCGCAGAGGAGCAACAGCGGCGTGAGGAGTTTTTCAATCAATTGTTCCTTCGAAATAAATCGGGCCTCTCACGAAGCATGACCTCGCTTTCGCCAGAATCGCCCGACCATTCCATGGACGAGGCCGCCGAGGAGATCAAATACGAGCCCGACAACGACAAATTTACCCAGCAATCGCACGACTCAAAAGATCTGGCTGACATCCAATCTATTCTAAATATGACGTCGTCGTCCTCGACCTCGAACTTCCTCAAGAACTTCGAGCAGTCAGTAAACACCCCCTCGAGCAACTATGGCCTGGATAAGGACGAAGAGGAAGCTCAAGACGCGTTCACGTCCGAATTTCGAAAAATGAAGCTGCGAGGCGAGTTCCCATGCAAATTGTGCACGGCGGTGTTTCCCAATCTACGCGCTCTAAAAGGTCACAACCGCATCCACTTGAGTTCGGTTGGCCCCACGGGACCATTCCGAtgcaacatgtgcccgtacaccatctgcgacaaggcggcactcgtgcgccacatgcgcacccacaacggcgacaggccctacgagtgcgccgtttgcaactacgccttcaccacaaaagccaactgcgaacgacacctgcgcaacagacacgcgaagaccacacgagACGACGTGAAAAGAGCCATCATTTACCACCCCTCCGAGGACTCTTCGTGCGATGACCCTGCCAAGAAGCTTCACCTCTTCTCATCACCAGAATTCGATGACGACATCGAGCTCCAATACCAACACCATCAGCCGAAGGATCGTTCGACGCCTGTGTCTCATTTGAAAGAGATGCTGACATGCGACATCGGCTCCAGTAAAGCCATGAAAATCCAAGTAAAGAGTTTGGAGCAGTTGTTGGACAAGTCTACCAACTCGTCCACCTACAGCGAGAACTTCGAAGAGCGTCCAAGGCCTGCAGCCGCACAACCTTCAGAAACTGCGCCGATGGATTTGAGTATGGATGTTTTGGACTTGAGCAGAAAACCAACTATATCTGAGAATCCGTCTGAACAATCGATGCGACCAGCACCAGCTCGCGATGCGTTGGATCCAATGGCTCCCGTTTCTTTAGTCGACCCTAAGTTCGACATCTCTGCCTTGGAAAAGAATCAGCAATATTTATTGGCGCAGCAGCAACTGATTAATGACGCCTTGCCGAAAATTGTCGACCCAGCACATTACTTTCAGCAATTGTATCGCAACTTGGTGTTTACGCCTATCAATCCATTGAATCCGTTTTTTCTGCAGAACTCCTTTCTGCCAAACAATTTGAGTGACTTGCAGAAATACGCACCTCTAATGAACCGAATGCTTGGTGCCTCGCAATCCTCGGCGAGTGTTACCGAGGCCGGGAAATCGAATGTGAACTCTGCTCCGCATGCACAATCAGTGCTACTACCCCAAGTCAGCCCACTGCTGTCCGATAAGTCCAGTGTTTCATCCTTAAATTCATCTTCCCCAGTGAGTGCAAATCACATTATACCTAAGTCACTTGTGTCCTCTACGTCCTCGCCACTGAACATCCCCAGGCATCCGCATATGCCTCAAACGAGTCTACAGGGCGGTCCCGTTAAAATGGTAATCAAGAATGGAGTGCTGATGCCAAAGCAGAAGCAAAGACGCTACCGGACTGAGCGACCCTTTGCATGCGAGCATTGCTCCGCCCGCTTCACACTGCGCTCCAATATGGAGCGCCACGTGAAACAACAGCACCCGCAATTTTACGCTCAGCGACAACGCAACGGCCACCATGTAATGCGCGGACGAGGTGCGAACAACGCAGCAGCGATGAACAGCATCAACCATTTGCATGCTGCTATCGCGGCCCACAATGGTACCACTGCCAATGTCGGGCCAACATCTTCTATTTCCGAGCAAGTCAAATATGCGATTCTTGCCCAGCAATTGAAAGCTCGTAAGGACACGGACCTGTTGCAACAAGCACTGGCCCATGGCTCAAGTAGTGTGGCACCGAATCATTTGATATTAGGCACATGTCCCGAGCCTTCATCCGTTACAAATGTATCCAATGAGCGTTCATCAAATACGAATGCTGTGCATATCATCTCCTCGAATGCTAACGGTTCTATGGAAGACGATGACCCCAAGCTTGTGATTGATGAGGATGATGAAGTTAGTGAAATTGCTGATGAAAGCTACAAAGTCGATGATGAACCGGAAGATATGTTGAACGAATGTTCAGCGAGTGTGGACGAACAGATAGACGAGGTCAAATCAGAATGTACTGACCAGAACGATATTACCAAGGCAGAAGGTGAAACAATTTTGGAACAGGTCATTAAAGGCAGTGCCAATTCCAAAACTACCAATAAAGAAGATGCCACTGAATCAGGACCCCCAACCATGAAGTCTATGATTGCTCAAGCCGAATCGGTCGGAAAATTCTTAAAGGAAGTGGCCAGCTCTCCATTCAAAGACGAATCTCAAGACTTAGTGCCGGTGTCAAAACTGGTGGACAACGCTACTACAAACTCGATGTCCTTTAACAATTATTTTCGACCAAGCGATGTCGTCAACCACATGGAACAAAGTGATGAGGAGGGTTTGGTTGCTTCTGGGAGTGCCTCCGAGAGTAATAACTCTGGTACCGAAGATATATCCTCTTCAGCAGAGCCCAAAAAAAAGTCAGCCTACAGTCTAGCTCCGAACCGAGTGTCCTGTCCGTATTGCCAAAGAATGTTCCCATGGTCCAGTTCACTCCGACGCCATATTCTTACACATACCGGCCAGAAGCCCTTCAAGTGTTCTCATTGTCCTTTACTCTTTACCACAAAGAGCAACTGCGATAGACACCTTTTGCGAAAGCATGGAAATGTCGAGTCCGCCGTGTCCGTTTATGTCCCAACGGAGGATGTGAACGAGCCTATCCCAGTCCCGAAATCTGTTGAGGAAATAGAACAGCAGCAACGACAGCGCGAGGAGGAAGAAAGACAACGCAAAGCCGACGAAGCATTGCAATTAGAGAAACAACGAAGAGAAAAGGAGTTACGACAACAGGAAGAGCAGGAGCAGGAGAAGAAACAGCAACAGCTGTTGAAACAATACGCTGCCGCCCAATTAAGTCAGCTCGTCCAAACACAATCCGGGGCCGGCAACAGTCCCAAAGTTGATGCAAACTCGTTAGCCTCCACGGAGCTGCCGTTCAAGTGTCACCTCTGCGATAGCTCTTTCGGTGAACGATTCCACTGTCTGGAGCACATTAAAGTTCATCACGCTCATGATTTTGCATTGCTTTTGGCCAAGGGAGCAATCGATACCGACCCAGAACCCAATCAGTTCCACTCCATGGAGGAGGAGGAGAAGCGTCTTGGCGAGGAGTGCAGTGGTAAAGGTGGCAAATATCCTGACTACAGCAACCGTAAAGTTATATGTGCTTTCTGTGTTCGTCGCTTCTGGTCTACTGAGGACCTACGACGTCACATGCGCACACATTCTGGAGAGAGACCCTTCCAGTGCGATATTTGCTTGCGAAAGTTCACATTGAAGCATAGCATGCTTCGTCACATGAAGAAACACAATGGCCGCCATCATAGTGGTGTAGGATCCGGCGATCCCTCGAACGCAGCCAACAGCGGTTCCGATTTGTCAGATGACGAACAAATTCCTGCTACGAATTCCATGACGATTGCTAACACGCTGGCTTTGCGCACCCATAAGATCCAGGAATTGCTGAGTAAGGCCAATGAATGGCGTGTTAACCGATTGTCGATGGGAGAGCACAAAGAAAACATCGCCGAGGAGCAGAATAATCAATCTGATCTCATCGGCAACTTGCTGGGTATCAGTGATCAAGGTATTTTGAATAAACTGCTTTCATCCGCTGACGAGGCAGCCAAGCTTTTGGGCGTTGACAAGTAA
Protein Sequence
MLRTATTATTAPVAKSTTSISQEPTQIADDEHSRDAPIKMERRDSTTSESSLEHLDLGRTPKKLNVLSSATSTPHVGNGSSNAKSSASSVAEPASQDTIESLKPQRQLLHHDSDEANDYDDEESADEKLNSSRPHRHHHHKRRSSGRLDKRSVQLELNAENPNSLRKKFRFNRSAADANCGGNNESGFVDGSSSSSQLLNASTTSQVSVPATQQAHHSPRTSGSQSSSASSSPHGADASTASSPESGLGERDDMKFVCPICEDVSATPHEFTNHIRCHNYSSGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCPLTFTTNGNMHRHMRTHKQHQHNHHHRRNSNGTAAKHSTATQSAAAAGTVPPTPASTGAQLTNGVGGEGVKAAAAPGAPTPTGAPNGAGANGRRFNGGGSGGGAVESYESDGGCSTDSSSAISRSSNNHNNNNIKTNNNNNNININNNNNNNNNNKTMNTSNNFKRKNCDNLDEDITLMKRRVKTTINNNTIGASDEHHFETGSDAADEQASQPHWQQQCPVCNASDFDSVLALSAHMDSEHCDIPAKCRHCDVVFHTHRQLNVHPCSSRSKITAGFKDLTFVDFSSEKFPLIAKSLCEQSLRSAVTSQKFECQKCGRAFPCASAVEMHERECQLPLKLFGFAENAPRMKQRSVSENSGCLEEGAEEQQRREEFFNQLFLRNKSGLSRSMTSLSPESPDHSMDEAAEEIKYEPDNDKFTQQSHDSKDLADIQSILNMTSSSSTSNFLKNFEQSVNTPSSNYGLDKDEEEAQDAFTSEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRIHLSSVGPTGPFRCNMCPYTICDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKTTRDDVKRAIIYHPSEDSSCDDPAKKLHLFSSPEFDDDIELQYQHHQPKDRSTPVSHLKEMLTCDIGSSKAMKIQVKSLEQLLDKSTNSSTYSENFEERPRPAAAQPSETAPMDLSMDVLDLSRKPTISENPSEQSMRPAPARDALDPMAPVSLVDPKFDISALEKNQQYLLAQQQLINDALPKIVDPAHYFQQLYRNLVFTPINPLNPFFLQNSFLPNNLSDLQKYAPLMNRMLGASQSSASVTEAGKSNVNSAPHAQSVLLPQVSPLLSDKSSVSSLNSSSPVSANHIIPKSLVSSTSSPLNIPRHPHMPQTSLQGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRNGHHVMRGRGANNAAAMNSINHLHAAIAAHNGTTANVGPTSSISEQVKYAILAQQLKARKDTDLLQQALAHGSSSVAPNHLILGTCPEPSSVTNVSNERSSNTNAVHIISSNANGSMEDDDPKLVIDEDDEVSEIADESYKVDDEPEDMLNECSASVDEQIDEVKSECTDQNDITKAEGETILEQVIKGSANSKTTNKEDATESGPPTMKSMIAQAESVGKFLKEVASSPFKDESQDLVPVSKLVDNATTNSMSFNNYFRPSDVVNHMEQSDEEGLVASGSASESNNSGTEDISSSAEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAVSVYVPTEDVNEPIPVPKSVEEIEQQQRQREEEERQRKADEALQLEKQRREKELRQQEEQEQEKKQQQLLKQYAAAQLSQLVQTQSGAGNSPKVDANSLASTELPFKCHLCDSSFGERFHCLEHIKVHHAHDFALLLAKGAIDTDPEPNQFHSMEEEEKRLGEECSGKGGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCDICLRKFTLKHSMLRHMKKHNGRHHSGVGSGDPSNAANSGSDLSDDEQIPATNSMTIANTLALRTHKIQELLSKANEWRVNRLSMGEHKENIAEEQNNQSDLIGNLLGISDQGILNKLLSSADEAAKLLGVDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00352046;
90% Identity
-
80% Identity
-