Cpil023550.2
Basic Information
- Insect
- Coelopa pilipes
- Gene Symbol
- bab1
- Assembly
- GCA_947389925.1
- Location
- OX376699.1:39348897-39350691[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1e-17 3.6e-14 53.0 0.0 1 43 55 98 55 100 0.95 2 3 3.1 1.1e+04 -3.0 2.2 4 22 222 243 219 246 0.64 3 3 2.6 8.8e+03 -2.7 0.0 4 11 338 345 336 351 0.78
Sequence Information
- Coding Sequence
- ATGCTCGAGAACTCGCACTCCTGGATGGGCGCCTCGACCTCCTCGATCGCAGCAGACAGCTACCAGTACCAGCTGCAGTCGATGTGGCAGAAGTGCTGGAACACGAACCAGAACCTGATGCACCACCTGAGGTTCCGCGAGCGCGGCCCCCTCAAGTCCTGGCGCCCCGAGACGATGGCCGAGGCGATCTTCAGCGTCCTCAAGGAGGGCCTCTCGCTCTCGCAGGCCGCCCGCAAGTACGACATCCCCTACCCGACGTTCGTCCTCTACGCCAACCGGGTCCACAACATGCTCGGCCCCTCCATCGACGGCGGGCCCGACCTGCGGCCGAAGGGCCGGGGCCGGCCGCAGCGCATCCTGCTGGGCATCTGGCCGGACGAGCACATCAAGGGCGTGATCAAGACGGTCGTCTTCCGCGACGCCAAGGAGATCAAGGAGGAGGCCATCGGCATCGGGCACCCGGCCGCGCTGCCCCCCTACGGGCGGCACTCGCCCGTGTTCCCCGTGTTCCCCGAGGGCGGCCCCCATCTCGGCTACCCCGGGTCGACGGCGGCGGCGGCTGGCGGCGGGGTTGGTGGCGGCGTCGGGTGCTCCAACGGCGCCGTCGCCCTGCCGGGCCCGGGGCCCGCGCCCACGCCCACCGGCGACcagatgtcgcaggaggccacggccgccgccgtcgccgccgtggcgcacaacctgcgccagcagatgcagctcgccgccgccgcccagcatcagcaccagcagcagcagcaccaacaacaccagcagcatcagcaacatcagcagcaccaCCCCGAGGGCCCGCCCGGGCCGAGCCTGTTCAACCTGCCGCCCCACCTGCAGCCGCACTTGGCCGCGGCCGCCGCGGTCGCCGCCGCCGGTGCTGCTGGCGGACCCGCCGGCCCCGGCCCCGGTCCGGGCGGGATCCCGCTGCCGAAGCCCAGCCTCTCGCCAGCGTCGGGCCCACGTCACGCCCAGTCGACCTGCGGGCCCGGCCTGCCGCCcagcatggcggccgctctgcacatggcgggctccggctcgggccccagctcgatgcagcagcagcaacaacagcagcaccatctgcaacagctgcacatgcaacagcagcacgcgctccagcaacaccagcagcagcaccaacatccccaccaccagcagcagtcgccgggccacctgcccaccttccacccgccctcgacgGCCTCCACGTCGTCAGCGGCTTCCGCTTCTTCGTCGTCCCGCCACCAGCAGCAGGCGCCGTCCATCGCCGCCCCGTCCACGTCATCGGCCCCTGCCTCCGGCAAGCCGCAGAAGCCCGCCCTGCCCTCGCCGCACTCGGACTCCGCGCTCCACTCGCCGCTGGCCGAGCTCGGGCTGGGCCTGGGCCTCGACTACAAGTCGTCCCGCGGCTACGGCTCGCCGCGTCCCGAGCACCTCTTCCAGGAGGACCTCGCCGACCTGGTCGCCGGTGCCGGTGGAGGCGGAGGCTGCGGCGGCGGCGGCGGCTCGTCTGGGACTGCAGCAGGTGGAGCTGGCTCGAGCGCCTCGTCGTCGGCCGCGGCGGCGACGGCGGCCGGCAGCAGCAGCATCAAACTCGAGCCCACGAGTCGCGAATGA
- Protein Sequence
- MLENSHSWMGASTSSIAADSYQYQLQSMWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKEIKEEAIGIGHPAALPPYGRHSPVFPVFPEGGPHLGYPGSTAAAAGGGVGGGVGCSNGAVALPGPGPAPTPTGDQMSQEATAAAVAAVAHNLRQQMQLAAAAQHQHQQQQHQQHQQHQQHQQHHPEGPPGPSLFNLPPHLQPHLAAAAAVAAAGAAGGPAGPGPGPGGIPLPKPSLSPASGPRHAQSTCGPGLPPSMAAALHMAGSGSGPSSMQQQQQQQHHLQQLHMQQQHALQQHQQQHQHPHHQQQSPGHLPTFHPPSTASTSSAASASSSSRHQQQAPSIAAPSTSSAPASGKPQKPALPSPHSDSALHSPLAELGLGLGLDYKSSRGYGSPRPEHLFQEDLADLVAGAGGGGGCGGGGGSSGTAAGGAGSSASSSAAAATAAGSSSIKLEPTSRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -