Cfri017222.1
Basic Information
- Insect
- Coelopa frigida
- Gene Symbol
- stc
- Assembly
- GCA_017309665.1
- Location
- JAFDUT010000777.1:5257-9458[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.8 1.9e+04 -3.9 1.6 15 19 273 277 272 277 0.81 2 12 0.15 1.6e+03 -0.5 0.4 4 10 306 312 305 317 0.95 3 12 4.9e-06 0.052 13.8 17.5 3 19 319 335 308 335 0.87 4 12 2.3e-06 0.024 14.9 13.5 3 18 373 388 365 389 0.87 5 12 1.1e-07 0.0012 19.1 18.6 1 19 429 447 429 447 0.98 6 12 5.3e-05 0.56 10.5 16.3 4 18 495 509 488 510 0.86 7 12 0.038 4e+02 1.4 12.1 1 11 550 560 550 572 0.91 8 12 4.2e-10 4.5e-06 26.8 15.5 1 18 577 594 577 595 0.97 9 12 1.5 1.6e+04 -3.7 0.9 6 10 624 628 624 629 0.81 10 12 2 2.1e+04 -8.5 11.9 4 18 636 651 632 652 0.75 11 12 8e-08 0.00085 19.5 13.7 1 16 688 703 688 714 0.90 12 12 2.5e-07 0.0026 18.0 12.3 1 19 721 740 721 740 0.96
Sequence Information
- Coding Sequence
- ATGGATAACAATTTAGAAGCTAGCAGTTCAACAGATAGTAGTCTAAAGTCGAAATCATCATCGGGTTCATTGCGAGGAGGACAAGGACAAGGTTCAACTTCCTCGGGGGCCATTGCTCGTTCTTCCGGAGGATCCGGTTCCGGTTCCAATGCCAACAACAAATCAACACCGAATCAAAACAATCAACACAGCAGCAGCAGCAACAACATTAACAATAACCATCAGAGCAACTATAATAGCAACAATTATAATAATCAGCAACAACAACGTTCTGATTCACGCTCTTCCAATGGCTTCACCAATGGTCACGATTCAAATGCCGATAAGTCAGCCTCGCGCGAACGCGATCAACGTCGCTATCAGAACGGTGGACGTCGATCGATCGATTATCACGAGCGTGAGGATCGTTATGAGCGTTCGGAACGCGGTGGCTCGAGTCATGGACAACGTGTGAATCATCGCGATCGCTACGACAACCATCGGAGTAACAAACGTCGCGATGATTGGAATCGAAATCGTGATCGCATCAATGGTTATCGTGTCGAGGAGAAATACTCATCGGATAATGGAAAGGATAGTCCACTGCCATCACCGGAAAAGAAATCTCCTAAGAAAATCTATCCGGAGAATGAGAAACTATCGCAGCGTGAGAAACTCATCAGAGATATCGAGACACGGCGACTCGAGTGTGCTGTTTGTGTTGAGCCCATCAAGGTTCATCATTCGGTATGGACTTGCAGTAATTGCTACCTCATTCTGCATTTGCAATGCATCAGCAAATGGGCGTCGAGCTCAAAATCCGATGATGGATGGCGTTGTCCTGCCTGCCAGAATGTTGTCAAAGACGTACCACGTGATTATTATTGTTTCTGTGGCAAGGTGAAGAACCCGCCGTATACTCGTCAAGATATTGCTCACTCTTGTGGCGATGTTTGTGGACGTGTCGAAGGTTGTGCTCACGCCTGCACTTTGCTCTGTCACCCCGGACCGTGTCCACCATGTCAGGCGAATGTGAAGCGTGAATGTGGCTGTGGCAAGACGACAAAAGTCATGCAATGTTGCCTCAAGGAATCCATCGAATGTGATGCCATCTGTGGTAAATTGCTCAACTGTGAGCTGCACACGTGCGGCGACAAATGCCACGCTGGCAAGTGTCAACCGTGCGAGGAGAAAGTCGACCAGAAGTGCCACTGTTCCAAGCAAGAGCGACAAGTCGCCTGCACTCGCGATTCGCATGAGAAACACACGTATTCATGTGGTAAGCCTTGTGGCCGCGATCTCGCTTGTGGCAATCACAAGTGCAAGGATTGTTGTCATGCGGGCGAGTGTCGTCCATGCAAACAGAGTCCCGAAGTGGTCACCTCGTGTCCTTGCGGCAAGATGCCAGTCGTCCAGGGACAACGAACCTCTTGCCTCGATCCGATACCCGTTTGTGAAGGTGTCTGCAGTCGCACATTGCGCTGTGGCAAAGCAGCTCATCCTCATCATTGCACAAGTAAATGCCATTTGGGCAATTGTCCTCCATGCAACAAGCAGACCGCCATCAAATGTCGTTGCGGTCACATGGATCAAATGATCAAATGTCGTCAACTCTCGACGCGCGCCGACGATGCCCGTTGCAAGAAGCGATGTGTGAAGAAACGTTCATGCGGCAAACATAAATGCAATCAAGAATGTTGCATCGATATCGATCACATCTGCCCGTTGCCATGCAACTACACGCTATCGTGTGGCAAGCATAAGTGCGATCAACCCTGCCATCGTGGCAATTGTCCACCATGCTATCGTTCATCCTTCGAGGAACTCTACTGTGAATGCGGTGCCGAAGTGATCTATCCACCGGTGCCGTGTGGCACAAAACGTCCCGTCTGCAAGCGACCCTGTTCACGCTCTCACCCGTGCGATCATACGCCACAGCACAACTGCCACTCGGCGGCCACCTGCCCGCCCTGTATGATGTTCACCACCAAATGGTGTTTCGGCCAGCATGAACAACGCAAAACCATTCCATGTTCACAGGAGAGTTTCAGCTGTGGGCTGGCGTGCAACAAACCACTGCCATGTGGACGTCACAAGTGCATTCGTTCGTGTCACGAGGGTCCGTGTCAACAAACGCAAACCGAGGTGTGCAAACAAAGTTGCACCGCTTTGCGTCCGACTTGTGGACACAAATGTATGGCCGCTTGTCATGATGGCAATTGCCCCGAGACACCTTGCAAGGAAATGGTTGAGGTTCAATGCGATTGTGGAAATCGCAAACAGATGCGTTCTTGCCATGATTTGGCTCGCGAATATAGCCGCATTGCCACCGCTCAGCTGGCTTCATCGATGGCCGAGATGCAGCGCGGCAACTACATGGAGCTGAGTGAGATTTTGGCACCGGTCAAAACAAATAAAACCAATAAAACACTTGATTGCAACGAGGAATGTCGTCTGGTCGAACGCAATCGTCGTCTGGCCATTGGACTACAGATTCGTAATCCCGATCTGCCGCAGAAGCTATTGACCAAATATTCCGATTTCATACGGAATTTTGCCAAACGTGATCCGGTTCTGGTCCGTTCGATACACGATGCTTTAACGAATCTGGTCAAGTTGGCGAAGGAGAGCAAGCAAAAGTCACGCAGCCATTCGTTCCCGACGATGAATCGTGAGAAGCGCCAGTTGGTCCATGAGATGTGCGAGATGTTTGGCGTCGATTCGGTGGCCTATGATGCGGAGCCGAATCGAAATGTTGTGGCCACGGCGCACAAGGATCGGTCGTGGCTTCCGGCCACCAGCATCATCGACGTCATGCAGCGCGAGTCTGGCCAGCGACGTGTTCCGGTGCCGAGCAACAATGCTTGGGGCATCAAGAGATAG
- Protein Sequence
- MDNNLEASSSTDSSLKSKSSSGSLRGGQGQGSTSSGAIARSSGGSGSGSNANNKSTPNQNNQHSSSSNNINNNHQSNYNSNNYNNQQQQRSDSRSSNGFTNGHDSNADKSASRERDQRRYQNGGRRSIDYHEREDRYERSERGGSSHGQRVNHRDRYDNHRSNKRRDDWNRNRDRINGYRVEEKYSSDNGKDSPLPSPEKKSPKKIYPENEKLSQREKLIRDIETRRLECAVCVEPIKVHHSVWTCSNCYLILHLQCISKWASSSKSDDGWRCPACQNVVKDVPRDYYCFCGKVKNPPYTRQDIAHSCGDVCGRVEGCAHACTLLCHPGPCPPCQANVKRECGCGKTTKVMQCCLKESIECDAICGKLLNCELHTCGDKCHAGKCQPCEEKVDQKCHCSKQERQVACTRDSHEKHTYSCGKPCGRDLACGNHKCKDCCHAGECRPCKQSPEVVTSCPCGKMPVVQGQRTSCLDPIPVCEGVCSRTLRCGKAAHPHHCTSKCHLGNCPPCNKQTAIKCRCGHMDQMIKCRQLSTRADDARCKKRCVKKRSCGKHKCNQECCIDIDHICPLPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKRPVCKRPCSRSHPCDHTPQHNCHSAATCPPCMMFTTKWCFGQHEQRKTIPCSQESFSCGLACNKPLPCGRHKCIRSCHEGPCQQTQTEVCKQSCTALRPTCGHKCMAACHDGNCPETPCKEMVEVQCDCGNRKQMRSCHDLAREYSRIATAQLASSMAEMQRGNYMELSEILAPVKTNKTNKTLDCNEECRLVERNRRLAIGLQIRNPDLPQKLLTKYSDFIRNFAKRDPVLVRSIHDALTNLVKLAKESKQKSRSHSFPTMNREKRQLVHEMCEMFGVDSVAYDAEPNRNVVATAHKDRSWLPATSIIDVMQRESGQRRVPVPSNNAWGIKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -