Cfri002095.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Coelopa frigida
Gene Symbol
wdn
Assembly
GCA_017309665.1
Location
CM029561.1:9330732-9333774[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 2.6e-07 2.3e-05 24.8 0.5 1 23 368 390 368 390 0.99
2 7 0.056 5.1 8.0 1.8 2 23 402 422 401 422 0.93
3 7 2.4e-05 0.0022 18.6 1.3 3 23 430 450 428 450 0.97
4 7 3.8e-06 0.00035 21.1 4.0 1 23 456 478 456 478 0.98
5 7 0.0002 0.018 15.7 3.0 1 23 484 506 484 506 0.97
6 7 3.8e-06 0.00034 21.1 0.8 1 23 512 534 512 534 0.96
7 7 9.1e-05 0.0082 16.8 2.3 1 23 540 563 540 563 0.98

Sequence Information

Coding Sequence
ATGCAAAGCGAAAATCAAAAGAAAAGTGAAGAAAAGGCAAAAATGAAAGAAGAAGCGCCAACTAAGAAATTGCCGCCTAAAATATCTGGTGGAGCAGGCGGTGGAACCCCAGTGAAAAATAGCAACAGCAGCTACACGCGAGGACCCACGAGTGATGAAATCCTCAGCACGCTGCTCCGAATTAACAACTTCGATTCGATATCCAGCATCAAGGATGAGTCGCTGGACATCGATTTGTCCGCATGTGTCACTATCAGCGCCGATACGTCGGGCATGATGAACGGCAATAGTCTGTCGTCAAATGACTTTTGGCGCGTGCTGGACGAGAGTGCCCAAAATCCCGGCCAATTGGACATCACGACCAGCAGCGATGACGGCGGCGGCAGTGGCAACAACACCGCATCCTTGATAGAAATTTCAAATGGAATCACCACCGAGGGAACCATGGCCACTGTGGTCAATTTGGAGGAGCATACGCTGCCTCTCATCGTCAAACAAGAGAATCCGAGTTCGTTCAGTGGTACATTCCTTCGTCCGGAACCGCCGACGATGTCCGTTTCGCCGCTAAAGAAGATCACGAAGTCTCTGCCGGCAGAGCAGGCAGACAAGTTACGCAAACCGAAGACTAAATCGAATACAACTGTTGTTGTTGCTGACCAACGTCCGGTGGAACGTAAGAAACCCAAAACGACGATTGCCCTTCTTGTCAAACAGGAGCCACCAGAACAGCTTCTGGCGAACGACGACCATAATCAGACCAACAAATTCATTGACAACAACAGCCCGAACCACCTCCCATCGATCTCACATCATAGTTTTAATATATTTATGACACCAGTAGAAAACAACAATAGTACAACCAGTGCTCAGCAGAATTTTTGCACATCGCAAGAAATTCCCGCCGACTCCTCTTCGACCATCGCCGATGATGGGACTGTGTGTTCCACAACACACGAGAGGAATCTACCGCCAGTGACCCAACCGGATGAGCAGGTTGCCCCACCGCCGGAGCCGATCTTCAAGTGCGAAGACTGCAACGGATTAGTTCTGCATGGCCTACAAGAGTTTGCGATTCATGAGTCGGCATCCCATAAAATTCTCTATAAATGTAACGAGTGTCCGAAGGATTTCGAAAATGAGGCAGGTCTCAAGAAGCACATGAAGACGCATCGGTCTGTGGAGTCGCGCAAAGATGCGTGGAAGAAGTGTCCAGATTGTGGCAAATGCCTGAAACTTGGCAGCATGTGGATGCATCGCAAAATCCACAGTGATAACAAGAAATACGGCTGTGATATTTGTGGACAAAAATTTGTGCAGAAAATTAATCTTACTCATCACTCGCGGATGCACACGTCAGAGAAGCCTTACGAATGCCCAGAATGCCAAAAAAGATTCCAAGAAAGGTCACATTTGCAGCGTCATCAAAAATATCATGCTCAGACGCGCTCTTATCGCTGTGAGAAATGTGGAAAAATGTACAAAACGGAGCGTTGCCTTAAGGTACATAATTTGGTGCACTTGGAACAGAGACCATTCGCGTGTAATGTTTGCGATAAGTCATTCATCAGCAACTCCAAACTGAAGCAACATTCAAATATTCATACTGGCGAACGACCGTTTAAATGCAACTACTGCCCACGGGACTTCACAAACTTTCCGAATTGGCTAAAACACACTCGCAGACGTCACAAGGTCGATCATAAGACTGGGGAACATTTAGAGAACATACCCTCATACTGTTCCAAGAAGTCTGCTAAATCTACGGCGGCAAAGGCGGAAAAACTTCAGCCTGCAGCAGTGCCAAATCCATCGGTATCAGAACTAACAAGTTTAGCAAGTGATAAACCGAAGGAAGAAACAGTTGCAAAGCCCCAACCGAAACGTAAGAAGAAGATCAACACGCCTCTCGAGCCTCAACCTGTTGTTTCCAGTGACCCAACGCTGCAAACAGATATGCAATCTACATCCGTTGTGTCCACCGCTCCTGCCACAAAAGCAACCAAAGTTAAACGCGAACGCAAACAACCAACGCCGAAACAAGTGCAGAAGTCCCCAACTCCACCAGCAATTAAAAAGGAAATAATTGATTCGACAGAGCACCCGACACGACATGACACAACCACGACAATTGAAGAGACTAAAGCGACCACATCGACAAACTTTCGAGATCTACACTGCCTTAGCATTACATCAGCTGAAGAGCTGATCATGGAGCAAGCGCTTGAAATGGAAGAATGTGGACTCTATGATGCTCACAGCAGTTCAGTGGGCTTGGATACGGATAATGCTGTATCGGCAGAGTCTGCAGCAGCATTGCATTTTCAAATTAAAAATGAGTTTATTGACATCAAAGAAGAATTCATTTCCCTTTCCGAAGCTAATAATCGGGTGCTATGCTCGTCTTTGGAATCCTCTCCGTACTCATCACCGGCATCTATCGAATTTCCCGCTTCAAACAGTGTGGTGGTAACGACAAGTGCAGCTGCTGCCACACCAACAACAGCCTCGGATCACTGCATATCCTCTTCCTCTTACTACATGCCTTCATTTAGACTTAATTCAGGTCCAGTTGCCACAAACATGAACTCCCCTATAACGAACACTTCAACAGTAACAACTGCACCCAATGGAATCTCTGGAACATTGTTGCAATCAATACAACAACTACCAACGCACCAACAACAGGAGCAACAACGACAGCAGATTCCCAGCACTCAGGCGCTTATCAACCATCTGTATGTGCCCATAACGATGAGCATGCCACTTCTAATGCAACCTCAACAATGCACCACACATCAGGTGCTTCCGTCCGTCGATACTCTGCTATTTACGCACGCAAACTCAAAATTTTTCCACGGCAAGACAGCCGCACAAGCGACAGCACATCATAATTTATAA
Protein Sequence
MQSENQKKSEEKAKMKEEAPTKKLPPKISGGAGGGTPVKNSNSSYTRGPTSDEILSTLLRINNFDSISSIKDESLDIDLSACVTISADTSGMMNGNSLSSNDFWRVLDESAQNPGQLDITTSSDDGGGSGNNTASLIEISNGITTEGTMATVVNLEEHTLPLIVKQENPSSFSGTFLRPEPPTMSVSPLKKITKSLPAEQADKLRKPKTKSNTTVVVADQRPVERKKPKTTIALLVKQEPPEQLLANDDHNQTNKFIDNNSPNHLPSISHHSFNIFMTPVENNNSTTSAQQNFCTSQEIPADSSSTIADDGTVCSTTHERNLPPVTQPDEQVAPPPEPIFKCEDCNGLVLHGLQEFAIHESASHKILYKCNECPKDFENEAGLKKHMKTHRSVESRKDAWKKCPDCGKCLKLGSMWMHRKIHSDNKKYGCDICGQKFVQKINLTHHSRMHTSEKPYECPECQKRFQERSHLQRHQKYHAQTRSYRCEKCGKMYKTERCLKVHNLVHLEQRPFACNVCDKSFISNSKLKQHSNIHTGERPFKCNYCPRDFTNFPNWLKHTRRRHKVDHKTGEHLENIPSYCSKKSAKSTAAKAEKLQPAAVPNPSVSELTSLASDKPKEETVAKPQPKRKKKINTPLEPQPVVSSDPTLQTDMQSTSVVSTAPATKATKVKRERKQPTPKQVQKSPTPPAIKKEIIDSTEHPTRHDTTTTIEETKATTSTNFRDLHCLSITSAEELIMEQALEMEECGLYDAHSSSVGLDTDNAVSAESAAALHFQIKNEFIDIKEEFISLSEANNRVLCSSLESSPYSSPASIEFPASNSVVVTTSAAAATPTTASDHCISSSSYYMPSFRLNSGPVATNMNSPITNTSTVTTAPNGISGTLLQSIQQLPTHQQQEQQRQQIPSTQALINHLYVPITMSMPLLMQPQQCTTHQVLPSVDTLLFTHANSKFFHGKTAAQATAHHNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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