Cfri021210.1
Basic Information
- Insect
- Coelopa frigida
- Gene Symbol
- -
- Assembly
- GCA_017309665.1
- Location
- JAFDUT010000093.1:53436-56326[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.9 81 4.2 3.1 1 23 244 274 244 274 0.87 2 13 0.049 4.4 8.2 0.3 3 23 282 303 280 303 0.94 3 13 3.5e-06 0.00032 21.2 2.3 1 23 308 331 308 331 0.96 4 13 6.2e-05 0.0056 17.3 1.2 1 23 336 358 336 358 0.96 5 13 0.0032 0.28 11.9 0.2 2 23 365 386 364 386 0.96 6 13 0.00026 0.024 15.3 3.4 2 23 394 416 394 416 0.95 7 13 0.017 1.6 9.6 1.1 1 23 422 445 422 445 0.95 8 13 5.8e-05 0.0052 17.4 1.2 2 23 456 478 455 478 0.96 9 13 0.00059 0.053 14.2 0.4 1 23 504 526 504 526 0.96 10 13 4.2e-06 0.00038 21.0 2.6 1 23 533 555 533 555 0.98 11 13 0.00022 0.02 15.6 0.2 2 23 562 583 562 583 0.97 12 13 0.0098 0.89 10.4 0.8 1 23 590 612 590 612 0.98 13 13 0.11 9.5 7.1 5.6 1 23 618 641 618 641 0.97
Sequence Information
- Coding Sequence
- ATGGAAACGTGTCGAACTTGTGCTAAGTGTGATTTCGGTGATGAGACCAACTGGCTGGATTTATTTCATCCCGTGCGATGGGAGGCGCAGATTCAGAGCATACGAACGGAACTAAACATTTGGGATTTACAGATAAAACCCAACGATGGACTTCCCCAGAAGATTTGCACCGATTGTTTCAACAAGTTGTGCACGGTTTCCACCTTTCGGCGCGAATGTCTCGAGGCGCAGCAGATGTTGCGGAATCTCTTCGAAAACATGGATGAGCAGAATCTGATTGAAATCGATTTGGACGACGATGAGAATTCCAGAGAGAAACGAGAATTGGAGACGACAGAGTGGTCTGAGATGGGGCCGGAAGATTTCGGTGAATATTCCGGTGGAGATCAAGAACAACTATGTGGAGAGGAAGAGGAGGAGGAGCTGGTGGAGAAAGAACCTCAAGAACTAAATGAATTGCCAAATGAAGAACTCACAGAGATCTCAAATGCAATTGAAACACATAATCAAAACGATGTGAACGTGGACGAGAGAACAGAAACTGCCCAAAGTGCTTCATCGCCTGCTGCTGAACCAGACGAACCCAACTCCGAAAGCATAGTTTACATAACACTAAGCAATAGCACAGCCATGGATAATATAGCAATAATACAATTGGACCATCAGACCAACAACAACAACACCAACGATCTCAAATCAGGCCAGAGTGTGAATCCCATCAATATTCAATTCGAATGCAAATATTGTTACAAGCCCAAGAATAAACCGGGTGAAACTTTCGACACCCAGGAAGCTCTACTCGAGCACATTTCACGATCACACGATGCCATCAATCCATTCGGGTGTCCTCAGTGCGATCAGAAATTCCAGGATGCCCCCTCGCGAACGGTTCACCTGAAGGATCGACACGTCCAGAAGGAGTACAAGTGTGAGGAGTGTGGGAAAAGGTACGCGGATCGCTTTAATCTACAACATCACGTGGAGAAGTATCACAGCAAGGATCATTTCGCGTGCCCATCGTGCGATAAGAAGTTCCCATCGCGAAAGAGTCTCAAATACCACAGTCGTTGGCATCTGCCCGAGCGTCAGTTGCAGTGCGGCTACTGCGATCGTCTCTTCATCAGCGAGCGCCAGATGAAGGTGCATGAGGCCACGCACACCGGGATCAGGACCTCCGAGTATTGCACCTTCTGTGGGAAGAGCTTTTTCCATATAAAGAACCTTCGATGGCACATCTATCGCAAGCACGGCGGCGACAAACCGTTCAAATGTGCCTTCTGCACTGAGGTTTTCGCGTCATACAAAGAAAAGCGCCTGCACATGTTGGAATTTCATGCGAAGCATCTGACCGCCATGGAGAAGTCACAGTGCATGATTTGTCACAAGCGATACACGAACGAGATGGAGCTGAAGGAGCACATGAACATCATCCACCCGGAGAACTCAATACAAGTTGTGGCCGACAAGCGTGTCCTGCAGACGAAGAAGGAGAAGAAGTTCACCGGGATCTTCCAATGCGAATCGTGTCCGCAGAGATTCAACTTGAAGTCGGCGCTGTCGAGGCATTCGGCTGTTCACAACACCGAGGGACGACCGCACGTTTGTGCCGAGTGCAAGAAGAGATTCAAGCGAGTGCAGGATCTCCGATGGCACATGAAAACGCACTCCGAGGAGAAGCCGAACGTGTGCGACGTCTGCGGGAAGGGATTCGCTCTGAAGTACGTGTTGACGCAGCACCGGAAGAGCCATGAAGCTCTAGAGAAAAGCTTCCAGTGCGCAACTTGTGGCCGAACTTATTTATTTGAGAAATCTCTGCGCCTTCATGAACGTGTCCACACCGGAAAGACATATTACACCTGCGATTTGTGCGACGAGAAGTTCGTGACCCACATCAAGTTTTTATGCCATATGCGAAAGACGCATTCGACCAATAATACCGAGAATCAAGAAACCATGGACGATGATGAATTCGATGATCGGTTTACAGAATAG
- Protein Sequence
- METCRTCAKCDFGDETNWLDLFHPVRWEAQIQSIRTELNIWDLQIKPNDGLPQKICTDCFNKLCTVSTFRRECLEAQQMLRNLFENMDEQNLIEIDLDDDENSREKRELETTEWSEMGPEDFGEYSGGDQEQLCGEEEEEELVEKEPQELNELPNEELTEISNAIETHNQNDVNVDERTETAQSASSPAAEPDEPNSESIVYITLSNSTAMDNIAIIQLDHQTNNNNTNDLKSGQSVNPINIQFECKYCYKPKNKPGETFDTQEALLEHISRSHDAINPFGCPQCDQKFQDAPSRTVHLKDRHVQKEYKCEECGKRYADRFNLQHHVEKYHSKDHFACPSCDKKFPSRKSLKYHSRWHLPERQLQCGYCDRLFISERQMKVHEATHTGIRTSEYCTFCGKSFFHIKNLRWHIYRKHGGDKPFKCAFCTEVFASYKEKRLHMLEFHAKHLTAMEKSQCMICHKRYTNEMELKEHMNIIHPENSIQVVADKRVLQTKKEKKFTGIFQCESCPQRFNLKSALSRHSAVHNTEGRPHVCAECKKRFKRVQDLRWHMKTHSEEKPNVCDVCGKGFALKYVLTQHRKSHEALEKSFQCATCGRTYLFEKSLRLHERVHTGKTYYTCDLCDEKFVTHIKFLCHMRKTHSTNNTENQETMDDDEFDDRFTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00352600;
- 90% Identity
- iTF_00352038;
- 80% Identity
- iTF_00352038;