Cfri017633.1
Basic Information
- Insect
- Coelopa frigida
- Gene Symbol
- ZFY
- Assembly
- GCA_017309665.1
- Location
- CM029564.1:32857088-32859813[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00021 0.019 15.6 3.0 1 23 309 332 309 332 0.96 2 12 1.6 1.5e+02 3.4 0.2 2 9 338 345 338 354 0.85 3 12 1 92 4.0 1.4 2 16 365 379 364 389 0.81 4 12 4.4e-05 0.004 17.8 0.2 1 23 396 418 396 418 0.97 5 12 0.00025 0.022 15.4 0.8 2 23 425 447 424 447 0.93 6 12 0.00041 0.037 14.7 2.8 3 23 455 476 453 476 0.93 7 12 0.00081 0.073 13.8 0.8 2 21 489 508 488 509 0.93 8 12 1.4e-06 0.00013 22.5 0.2 1 23 533 555 533 555 0.98 9 12 0.00021 0.019 15.6 1.6 1 23 562 585 562 585 0.93 10 12 3.2e-06 0.00029 21.4 2.0 1 23 591 613 591 613 0.97 11 12 0.31 28 5.7 0.2 2 23 619 643 618 643 0.94 12 12 0.0048 0.43 11.4 1.0 2 23 647 668 646 668 0.93
Sequence Information
- Coding Sequence
- ATGGAAACTCTTCCCAGCCTGGAGGCGTGTCGTATTTGTGCCAACTTCTACGTAACCACCAGCGAGGTGGACTTCCTGAACATCTTCGAGCCGACGCAGCTGGTGGAAAACGAGATGGCGTTCATTGTGGATGAACTGAGGGCGTGGCAGTTGAACATATCCTGCAACGATGGATTGCCCCAGCGCATCTGCGGCAACTGCTTCACGAAGTTCGGCACGATTTACTCCTTCCGCCAAGAGTGCCTGGAGGCGCAGACGAAACTCTTGCAGGCCTTCGTGGAAGGCGACTGCGTGGAGGAGATCGTCACCGCCCAGGAGTCCATGATGAACGGCGGCGTCCTACCAACCGACGAAGAGGTGCACAACGAGGTGATTGGGGGACTGGAGAACATTCTGGAAGGTCACATCGACAACAATGTGGCGCCGAACTTGGAATCGAGTGAAGATTTGAAATATTTTGAGAATCAAAACGTTCCATTGGCCGAGGACCAGAAGTTTGACTTAAACGGAATCGAACCAGCCGAGAATCACGAACTGCAAGCACCAATAATTCCAAAATCTGAAGAGCAGCTGGCTAATAATTACGAAAATGAATCAAATGTAAAGCAGGAGGTCGCCAAATATGAAATGGAACCAATTGTTGCGCAAGATCTGGAGGAAGTCCTACAGGGGAATTATATTCCAAAGCAGATCCCTTTGAACAATAACCAGTCAGTTAGAAGCGCAAATAATTATGAAAACGACGAAGATTACGAAGCGACGGACTCATCGTCCCCCGAAGACGATGAATATACCCAACCTGAGAGCAGACAAAATCCGTTGGCTTGTCAATACTGCTTTGCAGTGGAAAAGAAACCCCTGGTATTTCCCTCTGTCGAAGACTTGTCCCAGCATTTCTTTGACGAGCACGATCCCACCTATCCCTACACTTGCCCACATTGTCCAAAGAAGTTCAATAGCGCAAAAGCGCGTTTTCGGCATGTGAAACAACAACATGTGCAGTATCGACGCACCTGCAAATATTGCGGTAAGCCCTTGGGAAGCCTCACGCAAAAGGAGCACATGGACATTTGTCAGTACATCGGCGACTGGGAGTGCGACATGTGCGGACTGCAGTTCAAACAGGTGACGCATTTCGTGTTCAGGGCGCACTTGCAGCGCGAACATCATTCGCACAAGAAGCAGTTCAAATGCAGCATTTGCAACCGGGTGTTTGTTCAACGTGCGGCGTTCGACGATCACATGGCTCTGCATGAAAAGAACTGCTTGTTGTATTGCAACGAGTGCCAAGAGGGCTTCTCAGATACCTACGAATTGAAGAAACATAAATATAAAATCCATAATGGGGAACTCCCAGTAAACTGTGATTATTGCGATAAAGCCTTTGTTACCTACGCCTTTCTCAATCGCCACCTTCATCATTTCCACCCGGATAAATTGGACGATTCTTCTAGCGCGACTATTAGCTGTGACAATTGCGGCACGGAATTCTCCTCTGTGCACAAGCTACGGAATCATCAGCAGAAGGCGCGCGACGAAAACGGCAAGTGCATCCTGATGCCGCAAAAAAAGACTACACATAGTCGCGTGGGCGTCTATCCATGCCCCTTTTGCCCGAAACGTTTCAATGTCAAGGCCCAATTGGCGAAGCATATCAATTCACACGACGTGACCAAGCGTCCGTATAAATGCGATAAATGTCACATCATGTGTCGCTCGCCGGCAGAGTTGAGACAGCACCAGGACGCTGCCCACAAGCACATCAAGCCCTTCGTTTGCGAACAATGCGGCAAGAAGTTTGCATACAAAAAGGATCTCCGCGACCACATGATACACCATGAAGAACTCAATATACCTTGTCCCGAAATTGGATGCGAGTACATTTGCAAAAACGATAAGGTTTTGAACGAACACATTCGCCAAAGACATCGCTTGGTACCGTGCGAGTATTGCAATGAAACATTCACGCGCCATCGCCTAATATTACACTTGCGCAATGTGCACAAGACCGATATCGAAATGGATGTGGAGAGCATGACGCCGTCGTCGCAGGACAAGGTTGTCGTCGAATTCGTATCCAATCGCTTACCGCACGACATAGCATTGAACAAGCCTTCCCATCAGTATCCAGCCGCTGGTGGCACCAACAATAGCCACCCCGAGGACTATGGAATCGATCAAGTTATCGAGCATGACCATGAGATTGTAGTTACATAA
- Protein Sequence
- METLPSLEACRICANFYVTTSEVDFLNIFEPTQLVENEMAFIVDELRAWQLNISCNDGLPQRICGNCFTKFGTIYSFRQECLEAQTKLLQAFVEGDCVEEIVTAQESMMNGGVLPTDEEVHNEVIGGLENILEGHIDNNVAPNLESSEDLKYFENQNVPLAEDQKFDLNGIEPAENHELQAPIIPKSEEQLANNYENESNVKQEVAKYEMEPIVAQDLEEVLQGNYIPKQIPLNNNQSVRSANNYENDEDYEATDSSSPEDDEYTQPESRQNPLACQYCFAVEKKPLVFPSVEDLSQHFFDEHDPTYPYTCPHCPKKFNSAKARFRHVKQQHVQYRRTCKYCGKPLGSLTQKEHMDICQYIGDWECDMCGLQFKQVTHFVFRAHLQREHHSHKKQFKCSICNRVFVQRAAFDDHMALHEKNCLLYCNECQEGFSDTYELKKHKYKIHNGELPVNCDYCDKAFVTYAFLNRHLHHFHPDKLDDSSSATISCDNCGTEFSSVHKLRNHQQKARDENGKCILMPQKKTTHSRVGVYPCPFCPKRFNVKAQLAKHINSHDVTKRPYKCDKCHIMCRSPAELRQHQDAAHKHIKPFVCEQCGKKFAYKKDLRDHMIHHEELNIPCPEIGCEYICKNDKVLNEHIRQRHRLVPCEYCNETFTRHRLILHLRNVHKTDIEMDVESMTPSSQDKVVVEFVSNRLPHDIALNKPSHQYPAAGGTNNSHPEDYGIDQVIEHDHEIVVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -