Basic Information

Insect: Coelopa frigida
Gene Symbol: -
Assembly: GCA_017309665.1
Location: CM029564.1:5157641-5159877[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0008 0.072 13.8 4.1 1 23 243 266 243 266 0.97

2 9 0.00013 0.012 16.3 2.7 1 23 273 296 273 296 0.94

3 9 1.4e-06 0.00012 22.5 0.7 1 23 303 326 303 326 0.94

4 9 0.01 0.9 10.4 0.5 2 23 334 356 333 356 0.88

5 9 0.0019 0.17 12.6 1.7 1 23 366 389 366 389 0.97

6 9 1e-05 0.00093 19.8 0.2 2 23 396 417 395 417 0.96

7 9 4.3e-05 0.0039 17.8 0.9 1 23 424 447 424 447 0.97

8 9 7.6e-06 0.00069 20.2 2.7 1 23 453 475 453 475 0.97

9 9 2.3e-06 0.00021 21.8 0.8 1 23 481 503 481 503 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0008	0.072	13.8	4.1	1	23	243	266	243	266	0.97
2	9	0.00013	0.012	16.3	2.7	1	23	273	296	273	296	0.94
3	9	1.4e-06	0.00012	22.5	0.7	1	23	303	326	303	326	0.94
4	9	0.01	0.9	10.4	0.5	2	23	334	356	333	356	0.88
5	9	0.0019	0.17	12.6	1.7	1	23	366	389	366	389	0.97
6	9	1e-05	0.00093	19.8	0.2	2	23	396	417	395	417	0.96
7	9	4.3e-05	0.0039	17.8	0.9	1	23	424	447	424	447	0.97
8	9	7.6e-06	0.00069	20.2	2.7	1	23	453	475	453	475	0.97
9	9	2.3e-06	0.00021	21.8	0.8	1	23	481	503	481	503	0.98

Sequence Information

Coding Sequence: ATGAGGTCGTTAACAGTGCAGAATGCAAAGTATCGCTGCCGGGCCTGCCTTGCACCTCTCGCCGCGAGAAGTGGTACAGAAAATGGTGCGGCGAATGCAATCAGGGCGCAGCTGGTCAACGACATCGCTTCACACGTTCGTGCGACGACCACCGCCAGCAGCTGTGACGACGATGGGAAGTGGCTGCAATTGATGCGGGAATTCGTCCACGACGTCTGCGACGACGAGCCGGAGTCCGATGATTATCCGCAGAAAATCTGCTCGAGGTGTGTCGCGGTACTGCAAGGATTCGACGAGTGGCGCCAGCAGGCGCTCCACAGTGCCGAAGCCCTACAAACGGTCTTCAACGAACTGGTGGCGGTGGAAGGAAAACTCTCCGAATCGGAGGTGAATGCAGAAGAAAGCAGCGATTGCCGGCCGGACGACGAGCCGTTGCTGGAAATAGAAACCGTGCTGCTGATCGATCCATTCCACACCCAGACTCCTCGGTCCACAGACGGCAGCGTGGACACAACCGAAGGCCAAGCCGGCGATGACAACGCCAGAGGGGAGGAAAGCCGGAGACACCGAATCTCGACAGACATTTCAATTGAAAGTGATTGCGATGCTTTCATTCGGAAGCCGCCCGCCGCTCGAAGGCCACCACTTAAATCTGATTGCCCACCGAGAACGGATGATCGTCGCAAGAGCCCGGATGCTGGGCGTCGACGCCGGAAGGCGGCCGCCTTCAAGTGCCAGCAGTGCAAGTGTCGCTTCGCCTACGAGCACAACTACGAGGCCCACATACGGGCCGTGCACGAGGGCTACGACCGGCCGTATCCGTGCGACCAATGCGATAAGAGCTACAAGAGGCTCCACACACTGCGCTATCACAAGTATGTGGCGCACGAGCTGGCCGTTCCATCGTACAGCTGCACCGACTGCGGCAAATCGTACAAGACCGAGGCCTCGTTGAAGCAGCATCGCCTGGAACTCCATCGCGGCCGGATGAAGGGCTGTGTGTGCGAGCAGTGCGGAGCCGCGTTCGCGGAGCCCTCGTCGCTGGCCCTCCACTGCAAGGTCGAGCACAGTGGCAACGACTTGAAGGTCAAGAGCTTCGAGTGCTCCGAGTGCATGCGCTCGTTCCAGAACCCCTACACGCTCAACTACCACCGACTGCGGTATCACTCGAACGAGCGGGAGTGCGAGTGTCCGATCTGCGGGGCGGGCTTCGCGAAGAGATTCATGCTGGTCGCACACATGCGCAGCCACACCAGGGACGAGGAGAAATATCCGTGCGACAAGTGCGGGCGCCTCTTCACGCAGAAGTGCGACGTGATCAAGCATGTGCGCGTCGTCCACCTGAAGATCAAGCCGTTCGCGTGTCCCCACTGCAGTGAATCCTTCGCCACGGCGAAGACCCTGCGGCATCACATCTACACGCACACGGGCGAGAAGCCCTACGTGTGCGATATCTGCAACAAGGCCTTCCGACAGCCCACCTCAATGAAGATGCATCGAATGAGACACGCGGCGGACGAGGCTCCAGATCGGCCATTGGAGGAGACGGAATATTTTACCGCCGACCTCATCTAG
Protein Sequence: MRSLTVQNAKYRCRACLAPLAARSGTENGAANAIRAQLVNDIASHVRATTTASSCDDDGKWLQLMREFVHDVCDDEPESDDYPQKICSRCVAVLQGFDEWRQQALHSAEALQTVFNELVAVEGKLSESEVNAEESSDCRPDDEPLLEIETVLLIDPFHTQTPRSTDGSVDTTEGQAGDDNARGEESRRHRISTDISIESDCDAFIRKPPAARRPPLKSDCPPRTDDRRKSPDAGRRRRKAAAFKCQQCKCRFAYEHNYEAHIRAVHEGYDRPYPCDQCDKSYKRLHTLRYHKYVAHELAVPSYSCTDCGKSYKTEASLKQHRLELHRGRMKGCVCEQCGAAFAEPSSLALHCKVEHSGNDLKVKSFECSECMRSFQNPYTLNYHRLRYHSNERECECPICGAGFAKRFMLVAHMRSHTRDEEKYPCDKCGRLFTQKCDVIKHVRVVHLKIKPFACPHCSESFATAKTLRHHIYTHTGEKPYVCDICNKAFRQPTSMKMHRMRHAADEAPDRPLEETEYFTADLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -