Basic Information

Insect: Coelopa frigida
Gene Symbol: -
Assembly: GCA_017309665.1
Location: CM029565.1:36960149-36963922[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0073 0.66 10.8 0.6 2 23 45 66 44 66 0.96

2 16 0.006 0.54 11.1 2.4 1 23 72 95 72 95 0.91

3 16 0.019 1.7 9.5 0.1 3 23 100 122 98 122 0.93

4 16 0.00019 0.017 15.8 0.4 1 20 130 149 130 151 0.96

5 16 8e-06 0.00072 20.1 1.8 1 23 159 181 159 181 0.98

6 16 0.0088 0.79 10.5 2.7 1 23 187 209 187 209 0.97

7 16 0.00035 0.032 14.9 2.6 1 23 215 237 215 237 0.95

8 16 4.5 4.1e+02 2.0 2.7 2 23 687 709 686 709 0.94

9 16 0.54 48 4.9 0.4 1 23 734 756 734 756 0.88

10 16 0.13 11 6.9 2.6 1 23 764 788 764 788 0.96

11 16 0.17 16 6.5 2.9 2 23 793 814 792 815 0.93

12 16 6.5e-05 0.0059 17.2 0.3 2 21 830 849 829 850 0.94

13 16 0.0014 0.13 13.0 0.1 1 23 858 880 858 880 0.97

14 16 8.9e-07 8e-05 23.1 2.6 1 23 886 909 886 909 0.98

15 16 6.9e-05 0.0062 17.2 1.4 1 23 915 937 915 937 0.98

16 16 0.00019 0.017 15.8 2.2 1 23 943 965 943 965 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0073	0.66	10.8	0.6	2	23	45	66	44	66	0.96
2	16	0.006	0.54	11.1	2.4	1	23	72	95	72	95	0.91
3	16	0.019	1.7	9.5	0.1	3	23	100	122	98	122	0.93
4	16	0.00019	0.017	15.8	0.4	1	20	130	149	130	151	0.96
5	16	8e-06	0.00072	20.1	1.8	1	23	159	181	159	181	0.98
6	16	0.0088	0.79	10.5	2.7	1	23	187	209	187	209	0.97
7	16	0.00035	0.032	14.9	2.6	1	23	215	237	215	237	0.95
8	16	4.5	4.1e+02	2.0	2.7	2	23	687	709	686	709	0.94
9	16	0.54	48	4.9	0.4	1	23	734	756	734	756	0.88
10	16	0.13	11	6.9	2.6	1	23	764	788	764	788	0.96
11	16	0.17	16	6.5	2.9	2	23	793	814	792	815	0.93
12	16	6.5e-05	0.0059	17.2	0.3	2	21	830	849	829	850	0.94
13	16	0.0014	0.13	13.0	0.1	1	23	858	880	858	880	0.97
14	16	8.9e-07	8e-05	23.1	2.6	1	23	886	909	886	909	0.98
15	16	6.9e-05	0.0062	17.2	1.4	1	23	915	937	915	937	0.98
16	16	0.00019	0.017	15.8	2.2	1	23	943	965	943	965	0.95

Sequence Information

Coding Sequence: ATGGAGAATTCAACAACCGCTTCCAATTCGGATTCTGGCAACGTTTCCGCATCCGATTCCGCTGCCGCTTCTGCTGCTGCCATGCAAGCAGCCATGATGGTCCAGATCACCACCGATGGTGTGCCCAAACTCCATTGTCCCGTCTGCAACAAGGCGCTCGTCTCACTCAACGGCTATGTGAAGCATTTGAAAAAGCACGAACCACCCGGTGGATTCTTCTGTCGCTATTGCGATGCTCGTTTCTGCACCGATGAAGAATTGAAAAAACATCGTGATGCCGTGCACACGACAATCGCATGTCGCATCTGCAAAGACACCACGTTCACCAACGAGGATGAATATCGCGAACACATTCGCGTCGTACACAATGGCATCGATCGTGAGCTGTACAAATGTGAGAAATGCGATGCTGAATACAAGACACCGGAATCATTCAAGCGACATCAGGCGAATCAATGCGGCACCATCAAACCCTTCAAGTGTGACGAATGCGAGATGGCATTCTACACGAAATACAATCTCAAACAGCACAAAATAACGCATTCCGGTGAGCGACGATTCTGCTGCAGCTACTGCGGGAAGAACTTCCTGCAGAAGGGACGTTTGGTGGAGCACGAACGATCGCACACCGGTGAAAAACCATACAAATGTGATGTATGTGGGAAATGTTTCGCCCATCGCGAGAGCATCGTTACACATTCCTCCATACACACCGGCATCAAATTGGTCGAATGCCGTTGCTGCCTCTCTCGTTTCTCCTGCCATTCCAATCTCATCAAGCATCGTCGTTCGCGTCCCGAAACCTGCGGCCTTCCCGAATATAATCCACCCAAAAATGGTGTGCGCACACGAAAACCAAGAATTCCTCCCACAATGAATCCAACATCTGAGATCAAGGTGAGCAACTTGAATAAGGTCATTAAGCCATCGGATAAAATGCACGAGAAGAAAGGACGTCGTTGGCAAGTGGACAGTGGAGAGGAGAAGGCGAAAGTTAAACGAGCACCACAGCGCAGGCGCAAACAACCGGCGACAGAGTCAGAGGCTGAAACAACAAGTGAAGATGAGGAAGAAAACTCCGAAGGTGATGGACAGCTTTCAAAAGAAGCACGTGTCCAAACTCGCAGACATAAGAATATTCCGCCCACCACAACTTCAACAACGGATGGCATTCAACCTATCGATGAAGTTGGAGTCAACAAACCCGAATCCGAGGCAAATGCCATTAACGAAGATGAAAGTTATTCTGCTAATTCCAATGTAGCAGGAAATAGTACAACAGAGAATATATCAAATCCAACTGGAGTCGCCTCGAAATCACTGAAAGCCGAACGAAAACCTATTTGGAGTGATGATTCTGATTCCGCAGACGATTATCCAGACTTCGATACATTCGACACGGAAACTGATTCAGAGCATAAGACGGAAGTGAAGCTACCTTTGCCGAAGGTACCGATAAAGAAGGAAAAAGTAGAGGATACTACGATTAATGATTTCGAATATACAAATGCTAATGAATTTGTTAATGCCGAATTGAGTGTAAAGTCTGAAGATGAGCAAAACCTGTTCAATGAAAAGGATAAACTCTTGGACTGCCTTCTCAACGATAACGATGGATCCACCGCCTTTCGTTCGACTGATAATAATTCCACAACCAATTTTCCCTCATTCGATATCGTCAAGGTGGAGAGTTTATTGGACGAAAGCGAGGTGGTCTACATAAAGGATGAGGAACAAGTTGAGGACATGTTGAATGTGAAAGATTTTCAAAGTGACCTCAATGACTGTAAAATCGTACTGGAGGACGTGACACATCGATATCCTGAACTCAAGGAAGATGCGACTGTGAAAATCGCACGAAAGGCAAATCGATCAATCGATCGTCTGGCACAAAAGCGGCGTCGTCAACAAACCGACAATGGGTCGAGTAAAAAAGGGCGAACGTATCGGAAACGTGGCGAAGCCAAGGATGAACCTTCAGCACCGAAACGAATAGCAAAATTATCACAATCCGAGGTGAAGGAACGACTGAAAATGCTAAAGAGAGAGAAGTCTTGGCAATGTCCGCATTGCATAAAATTCTATCACATACGAAAACCATTCGAAAAACACCTTCGTGAAGAGCACAAAGTCAGCGAGGACGAGATCAAAGAGATCTTCAAGGAGGATGAAGAGATCGGTGTACTCGATGAGGAGATTTTCAAGTGCCAAATTTGTTCGAAAATATATTTGGTGGAGAAACGTCTTTTGGCACACGTGAAATTACATGGACCTGATGGAAGCCTCACACACAAATGTCCCTGCTATTGTTCGATTTATTTCGCCACCAAGGAAGAAGCACAGGATCATGCACGACAAAACCACAAGGATCTTCTCTATTGCGATATCTGCGACAAATACATGACCGGTCATGATAGCCTTAAGAATCACAAAAGCATCCATCACAGCGATAAGAATCCATCACAACGGAATATGAAAAGGAATCTCGTGTGCGATAAATGTGGGAAAAAATATTCAAGTCGCACCTCACTCACGGATCATGTGCGCTCCGATTGCGGTCGAATTCCCCTTTATCCTTGTGAGATTTGCGGAAAACGTCTGACGACGGCGGGAATTTTGAAAACCCATCTGCTTCTGCACAAGGACGATACGCCATTCCAGTGTGACAAGTGTGGCAAGACGTTTAAAGTGAAAGCTCAGTACAAGTCGCACATAAAAACTCGTCACACCGATTACAAGCCATTCAAGTGTCATTTATGTCCCAAGGAGTATCCATACCGTGAAAGTCTTCTCACTCACATGACTGTCCACACTGGGATCAAGCGCTTCCTGTGCAATGGTTGCGGCAAACGATTCACATGCATCTCCAATCTGCAGGCACATCGCAAGGTGCACGCCGATACCTGTGGAGCTCTGCCACTCAATGCCAAGGCCACCCAATATATGGGAGTGCAGAAGGGCAACCTGTTGATGGGTGCCAAACCCGAAGCTGGTTTAGATTACAAAGAGACTAATACTCTAATAGCCAAGGAGGTGATCGATCGTGATTTGCCCATGGCTCAAGAATTGAACTATCCTTCCGAGCCGTCGGCACCAATGGTCACGCAGCCATTAAACTATGCAGCACAGCATCCGTCGCATTTATTGTTGCCACCGCTAATTATGCCGCACTTTATCGATGATTCCCATTCGTCTTACTGA
Protein Sequence: MENSTTASNSDSGNVSASDSAAASAAAMQAAMMVQITTDGVPKLHCPVCNKALVSLNGYVKHLKKHEPPGGFFCRYCDARFCTDEELKKHRDAVHTTIACRICKDTTFTNEDEYREHIRVVHNGIDRELYKCEKCDAEYKTPESFKRHQANQCGTIKPFKCDECEMAFYTKYNLKQHKITHSGERRFCCSYCGKNFLQKGRLVEHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGIKLVECRCCLSRFSCHSNLIKHRRSRPETCGLPEYNPPKNGVRTRKPRIPPTMNPTSEIKVSNLNKVIKPSDKMHEKKGRRWQVDSGEEKAKVKRAPQRRRKQPATESEAETTSEDEEENSEGDGQLSKEARVQTRRHKNIPPTTTSTTDGIQPIDEVGVNKPESEANAINEDESYSANSNVAGNSTTENISNPTGVASKSLKAERKPIWSDDSDSADDYPDFDTFDTETDSEHKTEVKLPLPKVPIKKEKVEDTTINDFEYTNANEFVNAELSVKSEDEQNLFNEKDKLLDCLLNDNDGSTAFRSTDNNSTTNFPSFDIVKVESLLDESEVVYIKDEEQVEDMLNVKDFQSDLNDCKIVLEDVTHRYPELKEDATVKIARKANRSIDRLAQKRRRQQTDNGSSKKGRTYRKRGEAKDEPSAPKRIAKLSQSEVKERLKMLKREKSWQCPHCIKFYHIRKPFEKHLREEHKVSEDEIKEIFKEDEEIGVLDEEIFKCQICSKIYLVEKRLLAHVKLHGPDGSLTHKCPCYCSIYFATKEEAQDHARQNHKDLLYCDICDKYMTGHDSLKNHKSIHHSDKNPSQRNMKRNLVCDKCGKKYSSRTSLTDHVRSDCGRIPLYPCEICGKRLTTAGILKTHLLLHKDDTPFQCDKCGKTFKVKAQYKSHIKTRHTDYKPFKCHLCPKEYPYRESLLTHMTVHTGIKRFLCNGCGKRFTCISNLQAHRKVHADTCGALPLNAKATQYMGVQKGNLLMGAKPEAGLDYKETNTLIAKEVIDRDLPMAQELNYPSEPSAPMVTQPLNYAAQHPSHLLLPPLIMPHFIDDSHSSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -