Cfri000705.1
Basic Information
- Insect
- Coelopa frigida
- Gene Symbol
- -
- Assembly
- GCA_017309665.1
- Location
- CM029561.1:13439157-13445268[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.016 1.4 9.7 1.5 1 23 923 946 923 946 0.97 2 11 0.28 25 5.8 1.1 1 23 1099 1121 1099 1121 0.94 3 11 7.8e-05 0.007 17.0 2.8 2 23 1124 1145 1124 1145 0.97 4 11 1.2e-05 0.0011 19.5 0.2 3 23 1153 1173 1151 1173 0.98 5 11 1.7e-06 0.00016 22.2 5.8 2 23 1180 1201 1179 1201 0.97 6 11 0.0096 0.86 10.4 0.1 2 23 1272 1292 1271 1292 0.96 7 11 1.3e-05 0.0012 19.4 0.8 1 19 1298 1316 1298 1320 0.94 8 11 3.8e-06 0.00035 21.1 1.2 1 23 1328 1350 1328 1350 0.98 9 11 6.9e-05 0.0063 17.2 7.6 1 23 1356 1378 1356 1379 0.96 10 11 0.00064 0.058 14.1 6.5 1 23 1384 1406 1384 1406 0.98 11 11 0.0011 0.1 13.3 6.0 1 23 1412 1434 1412 1435 0.96
Sequence Information
- Coding Sequence
- ATGGTGGAAAACGTACAGTGTCCTGTGTGCACATTGTTCCTGCACGCAGGCATGAATCTGTCCGATCACTTGGAAACACATCCAAAGGAACAGGTGATCAAAGCTCTTGTGCAGTTGACTATCACTGGTGGTAAAATTGGCGGAGCTCTCTCTCTGGATGTTGTTGACGAGAAAAAACCAGACACGGAATCAATTCCAAAAGTGACAAGAGATAGAGAACACGAATTGAGTACCAACTCCACAAGTAACTCCTCCTCTTCCTTGCCGTCAAATTCGTCATCTATCAACAGCTTAAACTCATCATTTGTCTCGACACCGAAACAATCAAATAGCACCACCACTGCACTGACGACGACTGGAAAGCACATTTTCAACCAACAAAATGTCACATCGTCGCCTGCTTACCAGAAGAGTGGTGGGGGATCTAATGCCACTAGTGGCATCAGTGATGTTTCGCATATGCCGACGGATTTCAGCTCTTTTGCAAATCGTCATCAGCAGCAACAACCACCATCAAGTCAATTACACAATCAGCAACATACACATGTTGCAGTTCCAAATCAGAACCCACCACCACCGTCACAACAAGTTCCACAACTCCCAAGTTCAACGGCGCATGGATTTCATTCAATTTCACAACCACAAACATCGCTTCTAGCGCATCAGCATCAAAATCACACTAGTGCTCATCAACAGCTGCAGAATAGGCCACAGCATCCATTGTCAGTGTCACAACAGCAAAATTTGAAAATCATATATTCCTCAACTTTACCACCACCACCTCCATTGCAGCTGTTCACTTATCAACCGTCATCGCAGCCCCAGCATCAAAAACCTCCTCCTGCTTATGGAACAGCAATTAGTCAAATTCGATCTCAACATAACCAAAACAAACAGTCTCTAAATCAGCAACAACTGCACCGTACAACAGCTGTTACCACAACCACCGCGCCAACTTTGAAAGCGACCACCGCAGTAGCTTTAACTTCAGTAGCATCAACATCAGTGGGGTTATCAGCAGTAGCTTCGTCTTCAAAGCAATTAATTTTGAAACCAAATGTGATCCCAGAAAATGCACCTACAATACATCAGAAGCAATATCAGCAACAACAACAACAACAAAATGAGACTTTGCATCAATCCCAGCCACAATTTTCCAAAACTGGTGCACCAAGCACTTCATCTGCTCTGCAAAAATCGGGAACATATCAACAGCGAACTCAACCGTCACCATCGCCTTCAAGTGCAGCAGCCAGCAATCGGCAGTCAAGTTCCCAATATCCAACTATTCTGTCAGCTGCTATGGCTTCACCATCATCATCCTCTTCCGTTTTACGTTATGCAGAGTCACCCGTGACTGCACACTATTTGGAACGTGATAATGGTGACTTCATTGTTCAGGAGACACCTAAACATATTGTAGAATGCGTTGAGAAAGACAACGGTGAATTTTCAGTGATAGAGCGGATTTATCAATCGCCTCCAAGTGTTTTGCACATACATGATGATGATGATGAAGAGGATGATGCTAAAGAAGAAGCTAATGAAGCAATTGAAGAAAAATTAAATATTGAGAAACAGAAGAGCATAGAAAATCCCGATGAAGAAGAATTTATGAGTGTCGATGGAGATAGCGATTTAGAAGAAACTATATCTGAAAAATCGTTGCCTGCTTCAGCTTCAGATGCTGCTTTGAATAACTGCAACGGCGTCTCGGAGTCTCATCAGCAGAACAATTTTTCTGATTATCCTTTTAGTTTTCTGTACGGTGGTGGTAGTGTTGCTCAACAAATTGAAACGAAGGGGAACTTTTCGCCAATTTATCAACAGCAGCCACACGATGCAACAACGGCTGCTACTCTAGCTTCGGGTAGTAACTCAACGACAATCGAGGAGTTTACTTCAGTTAATGCTCATCACAGCCAGCAAAGATTTCATGCCACGCCTGCAGGATCTGCTCAATGGTATCATGCTGTATCTACTTCTAATACAGATTTTGAAGCTGCATTAGCAGTAGACTGTAGTGGTGCTGAAGGCGATGTAGGAAAATATTTGGATTTAGATTCGTGTAAGCGAGCTAATATGGCCGGATCTCAAGCGGCGCCATCTTCCACCTCGTCATCGTTTACTGCAGCAACCGAAAGTAGTCTAGCTGGGTGTACTACAGACGCTTTAAATATTCGAACCGATGAGAAGATGCCAGCGAAGGGGGAAATATCGGAGCAGGAGAGCAATTGTGATATTGAAAATTCATGGAGTCAACCTATGTATGGAGATATCCCTGCGCGGTTCTTTAAAACATCATTCCCTGGATTATTTCCACAGGAGAATGGTTGGAACAACGAGGAATATTTTACTGTGCATGATTTGAGCGCTTCAGCTGGTACCGTTAGCGCTAGTAACAACAAAACTACAAAGAGTTTCGACTTCCGTCTTCCTTTGGAATCCTCTAGTATATCTACAGCGCCTACTGGCATCTTGCACCAAAATCAACAACATATTGATGCACTCCCATCCACTTCTAAGAAGAAGCGGAAACGTGATTTGAATAGTGATAAGAGTTCAACCACAACGAGAGCGATTGCTGCAACGGTCACATCTCAGGAGTTACTACAGCAACCGCAACAACAACAACTGCTGCATATATATCATCAGCAACCCACAACATCTGCAGCTGTATTGGCTGGTCCATCTACTGCGGCTGCTGCATCACAAGCTGCTGCTTCGTCTTTAAATATTTCCATACAAAAGCAGCGTAAGAAGGTTTATCAATGTGCTCATTGTCCAAACGAATTCTCCAAGCTTAAAGACCGTAATTCCCACATGATTGTGAAGCACAACTACGTGCGTCAAAATCGTCGCCTTATTTGTTTACAAAACGGAGCGACAACAGAAACGGCTTCAGTAGTTGACTTGGCAGCTCCTTCAGGTTCGAATATTCTCACAATGCAACAACAGAATGGTGAATCGGTAGAAGATTCGAAGCATGGAATTGTCAAAATAGAAGTAGATAGTACAGAACAACCCATATCGTCGATAACTGATGCATCGCCTGATGAAAATATCACTGCAAAATCTGAGCTTATGGATGAAAAGGAGAGTTTGGCACTTGTACCAACATCCAGCTCTTCCGCCGTTGTTGATTCCAAACCTCTAAATGTACGACCATTGTCTTTGACGCATGCCACAAAACTTGCAACGCTTTATCGCATGTTGGTTTCATTTAATATATCAACTTTAAAACAAAATCAAAATTTCTCCGAAACCGACGTAAAGCTTATGGAATCCTCGATTTTCTTCTGCTATATATGTCGACAAAACTTCAGCACCGTCAAATTGTATGATGCTCACTTGACAGAACATCCTGCTGAGTGCTTTACGTGTGGAAAGAAATTCAATCGGTGGAAAAATTTCTCGTTGCATCTAAAGCGTCATTTGGGATGGAAAGAATTTGGTTGTAATGTTTGCGATAAAAAGTTTGTGGTACGAAGTGCATTGGTGGAGCACATGAGAATGCATACTGGTCAAACTCCATTGAAATGCAAGATATGTGGTAAACACTTCAAGCGTTATTCAAATCTTACTCAACATCGAAAACGCCATGGCAAGCAAATTATACGTAAAAAGGAGTTTGTTTGTCACTGTGGCGAAGGTGTTGCCAGTCGAAAGCACGATTCTTGTGGCACAAAGAGACCCATGATGCTAAGCCGAAATGTTGTCCTTATTGTTGTGACCGCTTTGTGCATGCAAATTCTCTACGTCGTCACATACGTTTGGCACATTCATGATAAATTTGACTACACCGAACCAATGGAGTGTCCCATGTGCAAACAGGTCTTCGCGAAGTCCTCCATAAGAGCTCATATGGCCACGCATTCTGTGGATACGCAACATGATTGCCCGATTTGCAATAAATCATTTTCCACAAAGTGGAATCTAAAAATACATTCATGGGTGCATGCCAACCGCACATCCAAACCCTTCAAATGCGAACACTGCCCCAAGGCATTTGTGCGTGAAGTGGACTTCAAGAACCATATGAATGCACACAAACAAATTAAACCATACACATGCGAGTATTGCGGATGCAAGTTCATAAGAAAGTATAATTACATGCGCCATCGACGTGAGCATCATGGAAACAAGAAATTCACCTGTGACCTATGCAAGAAATCGTTCCATCGACACTACTATCTGATCGAGCACAGGCGTATACACACTGGTGAACGACCGTTCCAATGTACGATTTGCGGCAAGAGTTCAACAACAAAGACTAATCATAATAAACACCTAAAGATACATCACTCGCGTGATCCATTTACTGTTGAGGCATAA
- Protein Sequence
- MVENVQCPVCTLFLHAGMNLSDHLETHPKEQVIKALVQLTITGGKIGGALSLDVVDEKKPDTESIPKVTRDREHELSTNSTSNSSSSLPSNSSSINSLNSSFVSTPKQSNSTTTALTTTGKHIFNQQNVTSSPAYQKSGGGSNATSGISDVSHMPTDFSSFANRHQQQQPPSSQLHNQQHTHVAVPNQNPPPPSQQVPQLPSSTAHGFHSISQPQTSLLAHQHQNHTSAHQQLQNRPQHPLSVSQQQNLKIIYSSTLPPPPPLQLFTYQPSSQPQHQKPPPAYGTAISQIRSQHNQNKQSLNQQQLHRTTAVTTTTAPTLKATTAVALTSVASTSVGLSAVASSSKQLILKPNVIPENAPTIHQKQYQQQQQQQNETLHQSQPQFSKTGAPSTSSALQKSGTYQQRTQPSPSPSSAAASNRQSSSQYPTILSAAMASPSSSSSVLRYAESPVTAHYLERDNGDFIVQETPKHIVECVEKDNGEFSVIERIYQSPPSVLHIHDDDDEEDDAKEEANEAIEEKLNIEKQKSIENPDEEEFMSVDGDSDLEETISEKSLPASASDAALNNCNGVSESHQQNNFSDYPFSFLYGGGSVAQQIETKGNFSPIYQQQPHDATTAATLASGSNSTTIEEFTSVNAHHSQQRFHATPAGSAQWYHAVSTSNTDFEAALAVDCSGAEGDVGKYLDLDSCKRANMAGSQAAPSSTSSSFTAATESSLAGCTTDALNIRTDEKMPAKGEISEQESNCDIENSWSQPMYGDIPARFFKTSFPGLFPQENGWNNEEYFTVHDLSASAGTVSASNNKTTKSFDFRLPLESSSISTAPTGILHQNQQHIDALPSTSKKKRKRDLNSDKSSTTTRAIAATVTSQELLQQPQQQQLLHIYHQQPTTSAAVLAGPSTAAAASQAAASSLNISIQKQRKKVYQCAHCPNEFSKLKDRNSHMIVKHNYVRQNRRLICLQNGATTETASVVDLAAPSGSNILTMQQQNGESVEDSKHGIVKIEVDSTEQPISSITDASPDENITAKSELMDEKESLALVPTSSSSAVVDSKPLNVRPLSLTHATKLATLYRMLVSFNISTLKQNQNFSETDVKLMESSIFFCYICRQNFSTVKLYDAHLTEHPAECFTCGKKFNRWKNFSLHLKRHLGWKEFGCNVCDKKFVVRSALVEHMRMHTGQTPLKCKICGKHFKRYSNLTQHRKRHGKQIIRKKEFVCHCGEGVASRKHDSCGTKRPMMLSRNVVLIVVTALCMQILYVVTYVWHIHDKFDYTEPMECPMCKQVFAKSSIRAHMATHSVDTQHDCPICNKSFSTKWNLKIHSWVHANRTSKPFKCEHCPKAFVREVDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDLCKKSFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTVEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -