Cfri011946.1
Basic Information
- Insect
- Coelopa frigida
- Gene Symbol
- prg
- Assembly
- GCA_017309665.1
- Location
- CM029565.1:32311088-32314615[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.59 53 4.8 2.9 1 23 222 244 222 244 0.84 2 9 0.00085 0.077 13.7 1.5 1 23 250 273 250 273 0.96 3 9 6.3e-06 0.00056 20.4 2.0 1 23 279 301 279 301 0.97 4 9 7.5e-09 6.8e-07 29.6 1.1 1 23 307 329 307 329 0.98 5 9 2.5e-06 0.00022 21.7 1.5 1 23 335 357 335 357 0.97 6 9 0.00014 0.012 16.2 2.0 1 23 363 385 363 385 0.98 7 9 7.3e-06 0.00066 20.2 0.6 2 23 492 513 491 513 0.95 8 9 0.0001 0.0094 16.6 2.5 1 23 518 541 518 541 0.91 9 9 1.6e-05 0.0015 19.1 3.0 1 23 546 568 546 568 0.98
Sequence Information
- Coding Sequence
- ATGGTCGAGTTGGACATGGAGTGTGAACCGGAGATAACAAAAACACAGCCGGAAAGCAATTTATGCAGACTGTGTCTCCAGCTGGACGACTTTGTGGTTGATATATTCGAGGATCAGTTGGATGAAAACTTAAAAAAGACACCTCTTGCCCAACGTCTCTTCGAGTTGTTTCAAATAAAGTATGAAAAGTCTTCACCTCTCCCGAGCCGTATTTGTCAGCGATGCCTTTACATGGTCGAGGCTTTCACTAGTTTCAGGGAGAATGTGCAGAAGTGTGAGTTGGAGTTGCAGAGGAGGTCGATGGTTGTGCAAAAGCCTCAAGGAAATAATTCTGCGCTTGAAGACAACTGTCGATCGGGTTTGAATGGATGTCCCGGACTATTTGAGCCTGAGAATGACTGCATCATTACAGTGGTGGATCCCAATCAGGAATACGAGAGTTCTGATGATGATTTCTCGATGGAATCGGAGTCCGAAGTGGAAGATCATTCACTGAACCCTCAGCCCTTCTCGTCGACTGCCATGAATGGTTCTGAGGGAACAGTCAAAAGAATAATTAATAACGATAAACCTTCAGAACGTGCAACTGAAAACAGCAACAAAGAAACTCCTTTCACGGCTCCAGCACTAGAAACGTTAGCCATGGAGTTCACCAAGAACACGTTCCTTTGCCAATATTGCGACATGGCATTTACCACTCATATGGATTGCGCGGAACACGAGTCTAGACACGACCCGTCCAACCCGTTTACATGTAATTTTTGTCCGTTTCGTACTTCTAATCGCCAGAATTTGATTTATCACATCAAAGAAATGCATGAAAATGAACGGCCATACATTTGTGCCCTATGTAACAAGGGATTCTGCCGCCGTTCAGATCTGAAAAAGCATACAATAGTCCACACCGGAGTGCGGCCCTTCACTTGTCCCGTGTGTGCAAAGAGTTTTTCGCGAAACACCAACCTTACAAAGCATATGCGAATCCACAGTGGCATTAAGCCCCATGTTTGTCAGAAATGTCCTCGTTCCTTCACTACGGCCGGCGAGTTGATGCGACATTCTCGGTCTCATTCGGAATTAAAGCCCTTCCAATGCGGAAAGTGTTCATCATCTTTCACGCGAAAGGATAAATTGCAACTGCATGAGCAATCGCATTTCAGAAAACAATCGGAATTTCTAATGAATCAAGCGAACACAGAGGTTCAAAACCAGCAAACTAAAAATATCGTGTCCTTGAATCCATACAAAGATGGAGAAACTAGCTCCTATGCATTACATTCCTTAGATATGGCACCTCCCGGTGTTAAAGCGCAAAAAATGTCCCAATTTAATAAGAGATCTTCTGAAGATACACACAAACACAGTATTTTGGCCACTCAGTTGCAACAAAGTCACCCATCGAGCGGAGAAACAACAAATCTGCAAAGCGAAAGCAAATTTAAAGCAATGCCCAAACAAAATTCCCGATGTATAACCTGTGATATATGTTCCAAAGTATTCACTCGTGAACGAGACTTTCAGCGTCATCAGGCACTTCACATGGATAAACTATTTACATGTAAACAATGTGGACGCGGTTTTAATCGACGTGAGAAACTGGTTCGCCATGAACACGAACAGCACCCACCACAAAGCTTCACGTGCGACAAATGTCATATGACATTCACCAAACGTGATGCTCTTAACATGCACCTTAAAGTTCATGAGCTCCAACAGAATATGTCTGTACAACATGCTGTAACACCTGGTTCATCGGTGGACTCTAGCACGGTCGGAGATCTTTTGCATAAACGCTTGTCTCAACAAACAGCAGCGACAACAGAAAGTTCTTTCTATGGTCAAATGGCGCCGACAATGAATCTGGGCTTCTACAGCGAAACTCGCCCTGAAGATAGAAATGGAGTTTAG
- Protein Sequence
- MVELDMECEPEITKTQPESNLCRLCLQLDDFVVDIFEDQLDENLKKTPLAQRLFELFQIKYEKSSPLPSRICQRCLYMVEAFTSFRENVQKCELELQRRSMVVQKPQGNNSALEDNCRSGLNGCPGLFEPENDCIITVVDPNQEYESSDDDFSMESESEVEDHSLNPQPFSSTAMNGSEGTVKRIINNDKPSERATENSNKETPFTAPALETLAMEFTKNTFLCQYCDMAFTTHMDCAEHESRHDPSNPFTCNFCPFRTSNRQNLIYHIKEMHENERPYICALCNKGFCRRSDLKKHTIVHTGVRPFTCPVCAKSFSRNTNLTKHMRIHSGIKPHVCQKCPRSFTTAGELMRHSRSHSELKPFQCGKCSSSFTRKDKLQLHEQSHFRKQSEFLMNQANTEVQNQQTKNIVSLNPYKDGETSSYALHSLDMAPPGVKAQKMSQFNKRSSEDTHKHSILATQLQQSHPSSGETTNLQSESKFKAMPKQNSRCITCDICSKVFTRERDFQRHQALHMDKLFTCKQCGRGFNRREKLVRHEHEQHPPQSFTCDKCHMTFTKRDALNMHLKVHELQQNMSVQHAVTPGSSVDSSTVGDLLHKRLSQQTAATTESSFYGQMAPTMNLGFYSETRPEDRNGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -