Basic Information

Insect: Coelopa frigida
Gene Symbol: -
Assembly: GCA_017309665.1
Location: CM029564.1:22564720-22566831[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.4e-07 8.5e-05 23.0 0.5 2 23 224 245 223 245 0.96

2 12 2.8e-05 0.0025 18.4 0.6 1 19 252 270 252 272 0.96

3 12 6.8e-07 6.1e-05 23.5 0.5 1 23 283 305 283 305 0.99

4 12 5.9e-05 0.0053 17.4 1.6 1 23 317 339 317 339 0.98

5 12 6.3e-06 0.00057 20.4 1.2 1 23 345 367 345 367 0.99

6 12 6.1e-06 0.00055 20.5 4.3 1 23 373 395 373 395 0.99

7 12 3.3e-07 2.9e-05 24.5 0.8 1 23 401 423 401 423 0.96

8 12 0.00018 0.016 15.9 0.3 1 23 429 451 429 451 0.98

9 12 0.00019 0.017 15.8 1.0 1 23 457 479 457 479 0.96

10 12 0.0029 0.26 12.1 7.4 1 23 485 507 485 507 0.98

11 12 1.2e-07 1.1e-05 25.8 0.9 1 23 513 535 513 535 0.99

12 12 0.00026 0.023 15.4 0.4 1 23 541 563 541 563 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.4e-07	8.5e-05	23.0	0.5	2	23	224	245	223	245	0.96
2	12	2.8e-05	0.0025	18.4	0.6	1	19	252	270	252	272	0.96
3	12	6.8e-07	6.1e-05	23.5	0.5	1	23	283	305	283	305	0.99
4	12	5.9e-05	0.0053	17.4	1.6	1	23	317	339	317	339	0.98
5	12	6.3e-06	0.00057	20.4	1.2	1	23	345	367	345	367	0.99
6	12	6.1e-06	0.00055	20.5	4.3	1	23	373	395	373	395	0.99
7	12	3.3e-07	2.9e-05	24.5	0.8	1	23	401	423	401	423	0.96
8	12	0.00018	0.016	15.9	0.3	1	23	429	451	429	451	0.98
9	12	0.00019	0.017	15.8	1.0	1	23	457	479	457	479	0.96
10	12	0.0029	0.26	12.1	7.4	1	23	485	507	485	507	0.98
11	12	1.2e-07	1.1e-05	25.8	0.9	1	23	513	535	513	535	0.99
12	12	0.00026	0.023	15.4	0.4	1	23	541	563	541	563	0.95

Sequence Information

Coding Sequence: ATGGAAATAGGAAATCCTGCCGCGGAAATGTTTCAAAAAACATGTCGTACTTGTACGTGCAAGGAGGCCGATGGTGAGGAGCTGCTTCAGTCCATTTTTGAATTTACCGAAGGGAACCCCGATATGTGCATTGTGGAGCTGTTGAGCAGCTCGACCCCGCAACTGAACATCCAGGCCTCCGACCACCTGCCGAAACAAATATGCTCCCAATGCCTCGGCAAGTTGGTGATTGTCCACCAATTCCAGCAAATGTGCATACGTTCAGATTTGCAATTGCGGCGCTTACTGGAATACGGGGCTGAGGAGAACAAATGCACCGAAATGTCAGAAATGTATGATAACCTTAGAAGAACACCAAGCGAAGATCCGCTCCAAGATGGAGTTGTAATCAATACAGCATCCATGGAATTCGGTCGGGAATTAAAGTCTTGTCTGAAACTAGAATTGCATGAGGACGAACAGGAAGAAACCATTGACAACGAGACCTATTTGGAAGCTGAAACTGTCTTAAATTCAAAGGAATGCAAAACTGAAGAAGTGGCAGACTGTGCTGAGAATGAATCAGATGAGGGTATTGATTACAATACTGTTGAAAATTATGAAGTAGAGGTTTATGAAGGAAAGGATAACAAGAGAATAAATTTAAAAATCAAATGTAACGACGATCTTTCGTGTCCTGAATGTGGGAAAATGTTCCAAAGGACATATAGTCTGAGTCGCCATATGAGTGTTCACAACGATATCGGAAAACCTTATGAATGTTCCAAATGTAAATATCGTTTCACAAGCGAGGCAAACCTCAAGCGTCATGAAATATGCCATGATAATTCCAACAATCCAGAGGGTTACAAGTGCAGTGAATGCCCCAGACGTTTCGCAACATCCGAATCACTATCAGCCCATCAACAATCTCACCAGAAGCCGCAGACTAAAAAGAGTACTGAACTATATTCGTGCGAGATATGCCTGAAAAAATTCAAAAAGTTAAGCATGTTAGCCCGACATTCCCGGAATCATCAAGAAAACAAGCAATTCAAGTGCAATTTATGTGATAAAACGTTTGCGATCAATGCACATCTAATCGATCACCTCAACAAACACAACGGTGTCAAACCGTACACTTGTGAATACTGCAATAAAGCATTTCAACAGTCGTGCACCCTAAAAGACCATCTTCGAACTCATACCGGCGAACAGCCGTATCTCTGTTCGGAATGTGGGAAGGCGTTTAGCAGTTCCAGCAATATGAAGCAACATCTACTCCGGCATACGGGTGAGAAAAGATACGAGTGCCAGGAATGCCCGAAAAAGTTTCCCTGTCTAAGCGATCTGGCTTCACATATGGCCGTGCATACAAAAATTAAACCTCATATTTGTGATATTTGTGGTTCGGCATTTGGAAAACCGTATCAACTGAAAAAACATAAAATGTATCATAACGGAGAAAAGCCGCATAAATGTGAATATTGCGAAATGAGATTTGTTTGCGCGGATCATATGCGACGCCATATGCGAACCCACACGGGAGAGAAACCGTATAAATGCACGTATTGCGACCGTGCCTTTGCGCAAAGCAATGATCTGGTGAAACACTTGCGATCCCATGTCGGCGATAATGTTTATACATGCGAATTGTGCCCAAAGGCTTTTCGTCTGGCAACTGAATTGCGTGAGCATTTTTCGCAACATAAAAACGACGACGAAGAGACACGTTTAGAAAATGCTAGAGCACTTGCGGACGAGACCATACGAAGGAGTATTGGACATAGGCATGCGGAGAAAGCAAACGTGAACACAACACTTAATTAA
Protein Sequence: MEIGNPAAEMFQKTCRTCTCKEADGEELLQSIFEFTEGNPDMCIVELLSSSTPQLNIQASDHLPKQICSQCLGKLVIVHQFQQMCIRSDLQLRRLLEYGAEENKCTEMSEMYDNLRRTPSEDPLQDGVVINTASMEFGRELKSCLKLELHEDEQEETIDNETYLEAETVLNSKECKTEEVADCAENESDEGIDYNTVENYEVEVYEGKDNKRINLKIKCNDDLSCPECGKMFQRTYSLSRHMSVHNDIGKPYECSKCKYRFTSEANLKRHEICHDNSNNPEGYKCSECPRRFATSESLSAHQQSHQKPQTKKSTELYSCEICLKKFKKLSMLARHSRNHQENKQFKCNLCDKTFAINAHLIDHLNKHNGVKPYTCEYCNKAFQQSCTLKDHLRTHTGEQPYLCSECGKAFSSSSNMKQHLLRHTGEKRYECQECPKKFPCLSDLASHMAVHTKIKPHICDICGSAFGKPYQLKKHKMYHNGEKPHKCEYCEMRFVCADHMRRHMRTHTGEKPYKCTYCDRAFAQSNDLVKHLRSHVGDNVYTCELCPKAFRLATELREHFSQHKNDDEETRLENARALADETIRRSIGHRHAEKANVNTTLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -