Cfri007451.1
Basic Information
- Insect
- Coelopa frigida
- Gene Symbol
- bab2
- Assembly
- GCA_017309665.1
- Location
- CM029563.1:17814630-17817008[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.3e-17 3.4e-14 52.5 0.0 1 43 57 100 57 102 0.95
Sequence Information
- Coding Sequence
- ATGATCGAGGGCGGACATCCGTGGATGGGAGGCGCCTCCACCTCATCCGTTGCTGCAGACAGTTACCAATACCAGCTGCAGTCGATGTGGCAGAAGTGCTGGAACACCAATCAGCAGAACCTCGTCCAGCAACTGCGGTTCCGCGAGCGCGGCCCCCTCAAGTCGTGGCGCCCCGAAGCCATGGCCGAGGCGATCTTCAGCGTCCTCAAGGAGGGCCTCTCGCTCTCGCAGGCCGCCCGCAAGTTCGACATCCCCTACCCGACGTTCGTGCTCTACGCCAATCGGGTGCACAACATGCTCGGCCCCTCCCTCGACGGCGGCGCCGATCCGCGACCGAAGGCGCGTGGCCGGCCGCAGCGCATTCTGCTCGGCATGTGGCCCGAGGAGCTGATCCGGTCGGTGATCAAGGCGGTCGTGTTCCGCGACTACCGCGAGATCAAGGAGGAGATCGGCCATCCCTACGCCAATGGAGCTGGACACCCGACCGGTTTCGGCGCCTCCGCCAATGGCTACCACAGCGCCTCCAAGTTGGCCGGCATGCAGGCGGCCCAGAACGCCGCCCTCGCCCCGCCCGACACCGCCAGCCCCCTCTCGACAATGACCGAAACCCTGCGCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGTCGATGAACATGTACAAGTCGCCCGCGTACCTGCAGCGCTCCGAGATCGAGCACCAGGTGTCGGCGGCCGCCGCCAAGCAGCAGCAGCAGCCCGGCCGCCCCGGCGCCCCCGACAACATTCCCGACCTGAGCGCCCTCGGCCTGATGGGGATCCCCGGCCTGAACGTCATCCCCTCGCAGGCGCAGCGCGGCGCCGGCCAACTGCATCCGAACGCCGTCGCTGCGGCCGCCTACTCGAGGGAGCGCGAGAGAGAGCGCGAACGAGAGCGGGAGCGCGAGCGGGAGCAGCGTGAGCGGGAGCGAGAGAGGGAGCGAGAGCGCGATCGTGAGCTGAAGGAGGCGATGCAGGCGCGACAATACGGCAACCAATCGCGAGGATCCTCCGCCGCCGCCGGCCAGAAACATCCGGGTCACGCGCCTCCGGCCGCGACCGCCGGCGGTTCGGCGTCCTCGTCGTCGTCGTCGCCGTTCGGCAACTACGGCAAGGGCAAGGATCTGCCGGGCTACGCGTACAACAAGCGCTTCCTCGACGGCCTGCCGCCCGGCATCGACTTCGAGGCGATCGCCAACGGTCTGCTCCAGAAGTCGGTGGCCAAGAGTCCGCGCTTCGAGGACTTCTTCCCCGGCCAGGACATGGGCGACCTCTTCGCGGGCGCCGACTCCGCAGCGGCCGCCGCCGGAGCCGCCTACCCGCCGGTCCGCGAGTCGCCGCTGATGAAGATCAAGCTGGAGCAGCAGAGCGCCGAGGTGCCGCACGAGGATTGA
- Protein Sequence
- MIEGGHPWMGGASTSSVAADSYQYQLQSMWQKCWNTNQQNLVQQLRFRERGPLKSWRPEAMAEAIFSVLKEGLSLSQAARKFDIPYPTFVLYANRVHNMLGPSLDGGADPRPKARGRPQRILLGMWPEELIRSVIKAVVFRDYREIKEEIGHPYANGAGHPTGFGASANGYHSASKLAGMQAAQNAALAPPDTASPLSTMTETLRRXXXXXXXXXXXXXXXXXXXXXXXXXQSMNMYKSPAYLQRSEIEHQVSAAAAKQQQQPGRPGAPDNIPDLSALGLMGIPGLNVIPSQAQRGAGQLHPNAVAAAAYSREREREREREREREREQRERERERERERDRELKEAMQARQYGNQSRGSSAAAGQKHPGHAPPAATAGGSASSSSSSPFGNYGKGKDLPGYAYNKRFLDGLPPGIDFEAIANGLLQKSVAKSPRFEDFFPGQDMGDLFAGADSAAAAAGAAYPPVRESPLMKIKLEQQSAEVPHED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00352457;
- 90% Identity
- -
- 80% Identity
- -