Cfri006886.1
Basic Information
- Insect
- Coelopa frigida
- Gene Symbol
- bab1
- Assembly
- GCA_017309665.1
- Location
- CM029563.1:17985989-17987821[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-17 4e-14 52.3 0.0 1 43 55 98 55 100 0.95 2 2 0.99 2.6e+03 -1.6 0.3 3 13 216 226 214 236 0.80
Sequence Information
- Coding Sequence
- ATGCTGGAGAACTCGCACTCATGGATGGGCGCCTCGACCTCCTCGATCGCAGCAGACAGCTACCAGTACCAGTTGCAGTCGATGTGGCAGAAGTGCTGGAACACCAACCAGAACCTCATGCACCACCTGCGCTTCCGCGAGCGCGGCCCCCTCAAGTCGTGGCGCCCCGAAACGATGGCCGAGGCCATTTTCAGCGTCCTCAAGGAGGGCCTCTCGCTCTCGCAGGCCGCCCGCAAATTCGACATCCCCTACCCGACGTTCGTGCTCTACGCGAATCGGGTGCACAACATGCTCGGCCCCTCGATCGATGGCGGGCCCGATCTGCGGCCGAAGGGACGCGGCCGACCGCAGCGCATCCTGCTCGGCATCTGGCCCGACGAGCACATCAAGGGCGTGATCAAGACGGTCGTCTTCCGCGACGCGAAGGAGATCAAGGAGGAGGCGATCGGGCCGCTCGGGCCGCACGCCGCCCTGCCCCCCTACGGGCGGCATTCGCCCGTGTTCCCCTTCCAAGAGGGCCACCTCGGCTACCCGGGCGCAGGGGCGGCGGGTGTGGGCGCGGCCGCGGGGGGCGCCGGCTGTTCGAATGGGGGCGTGCCGATGCCGGGACCCGCGCCCACGCCCACCGGCGACCAGATGTCGCAGGAGGCCACGGCCGCCGCTGTCGCCGCCGTGGCGCACAACTTGCGCCAGCAGATGCAGCTGGCGGCCGCACAGCACCAGCACCACCACCAACAACAACAACAACATCAACTCCAACAACAACAACAACACCAGCATCAGCATCAGCACCCACACCAGCACCAGCACCCCGAGGGCCCGCCCGGCCCCGGCCTCTTCAACCTGCCGCCCCACCTGGCCGCAGCCGCCGCCCGGAAGCCTTCGTCGCCCACCCACCGAGATCGGGATCCGCACGAGCAGCGCCGCAGCAGCCCCGGCGACCGCGCGCTCCACTCGCCGCTGACCGAGTTGGGGCTGGGGCTGGACTCAGGGGCGGGGATGGGTTACAAGCCGTCGTCGTCGTCCCGTGGCTACGCCTCACCTCGTCCCGATCACCTCTTCCAGGAGGATCTCGCCGATCTGGTGGCCGGACCCACGAGTCGAGAATGA
- Protein Sequence
- MLENSHSWMGASTSSIAADSYQYQLQSMWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKFDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDAKEIKEEAIGPLGPHAALPPYGRHSPVFPFQEGHLGYPGAGAAGVGAAAGGAGCSNGGVPMPGPAPTPTGDQMSQEATAAAVAAVAHNLRQQMQLAAAQHQHHHQQQQQHQLQQQQQHQHQHQHPHQHQHPEGPPGPGLFNLPPHLAAAAARKPSSPTHRDRDPHEQRRSSPGDRALHSPLTELGLGLDSGAGMGYKPSSSSRGYASPRPDHLFQEDLADLVAGPTSRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -