Cfri009128.1
Basic Information
- Insect
- Coelopa frigida
- Gene Symbol
- br
- Assembly
- GCA_017309665.1
- Location
- CM029563.1:32861438-32863116[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.4e-14 1.4e-10 40.9 0.0 2 43 322 363 321 365 0.93 2 3 0.0047 12 5.9 0.0 27 37 394 404 373 410 0.85 3 3 9.8e-19 2.6e-15 56.1 0.0 3 42 432 471 430 474 0.93
Sequence Information
- Coding Sequence
- ATGAATCACTTGAAATGGATGGGACATCAGTCAACAATATATGACATACAGAAAAACCTACGCAACGATCCGCAGAGTTGTGAGGTGACTCTAGCGGGCAAAGGCAAGTCGGTCCAAGCCCATCGGTTCGTCCTGTCGTCCTGCAGCGATCTGCTGCGGACGCTGCTCGCCGACATACCCATAGGCCATGAAGCCACCATAATAGTGCCGGACATAAAAGGGTCGCTTTTGGATAGTGTGCTAGCGTTTATTTACATGGGCGAAACATGTTTGAACTCCAACAACTTATCGGAATTTTTGGAAGCCATAAACCATCTTGGCATCAAGTCTGCCATAAGTTTCGAGTGCAATACGGGCATGCTGGCTAGCAATGGCAGTGGAGGTAATTCACCGATGAAAACAATAGCGACAATGCAAATGAGTCAAGATGAGATAATTGAAGAGGAACCATTGACATCACCAAAAATTGAGGAGCAAACTGTAATGGACACAGGCGACCAACAAGCTGCCCGTGAATTGGAGTTTCTCGATGTCTACAATGAACCTCAACAAAAGATTACCTATTCCATAGAGCACATGGCCGCTTCAACTTCCAATGAATTTATTCTTACCGAGAATTCAGGCACCTTCACCCTCACGCAGAATACAAAGCTAGAAAACGGAAGTGGAACGGAAAAAGTAGAAGTAGAAGAACAGGAAGATGATGTAGATGATAGTCAAATGATAGAAGAATATGGTAATACTTCAGAGCCTATGATAGAAATTGGGACTTCCAATAACAACTCACCAAATGCAAATTCGACGCTCATTCATATAAAACCAAAGATAAAAATCGAGAAACGGGCCACTCATCATCTCCAACCACTCAATACTACCCCCGACCCGACTTCAAACGCCCAAATGTCCATGTTGAACAGTTCCGCCGATAGTTATTCATCAAACTTCAATGACAGTCAAATCCGGGATGAAAACTTAGAAATGGCTGTGCAGGGTGTTCTGAACGCAGGCATGAGCTTGCAGAAAGCTGCCCAAAAATATCACATATCAAAAACAGTCTTGTGGCGGCGAGTACGTAAACATCCATTATATATGAAAACAAGTCGAGAAAACCCCTTGTTGGAGGCCGCCTGCAACAGACTGCGAAGTGGAGAATCCCTTAAAGTAATTAGCCAAGCTCTGGACATACCAATGTCCACGTTGCATCGACACAAAGTACGACTTGCTCAGCAAGGACGCCTTCCCGATTATATTTCATTTAAGAAACGGGGCTCATTCTCCAAGGAACAACTCAAAGAAAAACTTACAAAGGCTGTCCAGGCTTGTTTACATGAGGGAATGTCCCAAAATCATGCCGCAAACTTGTACGATATTCCCAAGAGCACGCTATGGCGTCACCTCCAAAAACGCATGACGGAAGCACAAATGCAATGCTTAGATGAGGAGGAGGCCATCAAGGAAGAAATAATTTTGTCCTAA
- Protein Sequence
- MNHLKWMGHQSTIYDIQKNLRNDPQSCEVTLAGKGKSVQAHRFVLSSCSDLLRTLLADIPIGHEATIIVPDIKGSLLDSVLAFIYMGETCLNSNNLSEFLEAINHLGIKSAISFECNTGMLASNGSGGNSPMKTIATMQMSQDEIIEEEPLTSPKIEEQTVMDTGDQQAARELEFLDVYNEPQQKITYSIEHMAASTSNEFILTENSGTFTLTQNTKLENGSGTEKVEVEEQEDDVDDSQMIEEYGNTSEPMIEIGTSNNNSPNANSTLIHIKPKIKIEKRATHHLQPLNTTPDPTSNAQMSMLNSSADSYSSNFNDSQIRDENLEMAVQGVLNAGMSLQKAAQKYHISKTVLWRRVRKHPLYMKTSRENPLLEAACNRLRSGESLKVISQALDIPMSTLHRHKVRLAQQGRLPDYISFKKRGSFSKEQLKEKLTKAVQACLHEGMSQNHAANLYDIPKSTLWRHLQKRMTEAQMQCLDEEEAIKEEIILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00351970;
- 90% Identity
- iTF_00351970;
- 80% Identity
- iTF_00351970;