Csp008087.1
Basic Information
- Insect
- Coelinius sp
- Gene Symbol
- -
- Assembly
- GCA_035578325.1
- Location
- JAOZGT010000005.1:3848736-3852200[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0098 1.1 10.3 4.6 2 23 226 248 226 248 0.91 2 12 0.00019 0.021 15.7 4.5 2 23 310 332 309 332 0.95 3 12 5.5 6e+02 1.7 7.6 3 23 424 445 423 445 0.95 4 12 0.00086 0.094 13.6 2.7 1 23 494 517 494 517 0.98 5 12 0.0014 0.16 12.9 0.9 2 23 562 584 561 584 0.94 6 12 0.00073 0.08 13.9 0.1 2 23 613 635 612 635 0.94 7 12 0.0072 0.79 10.7 3.6 2 23 693 715 692 715 0.96 8 12 0.097 11 7.2 4.2 3 23 730 751 728 751 0.92 9 12 0.00014 0.015 16.1 0.1 2 23 798 820 798 820 0.93 10 12 0.088 9.6 7.3 0.9 1 23 899 921 899 921 0.98 11 12 0.00019 0.021 15.7 0.7 2 23 935 957 934 957 0.93 12 12 0.1 11 7.1 1.3 1 23 1032 1055 1032 1055 0.97
Sequence Information
- Coding Sequence
- atggcATCGACAGTGGCCCATGAGGGAGTACTAGGATCGAGTGAGTTGGACAGTGAGGGTTCGAGTGTTGGTGATGAACGAGATGCCCAAAAACGAACGCGAGAGGACATTGACTCCAGTAGTCCAAAGAAGCGAAGAAAACAGACAACACCTGTCCGAGTGCCAACATCACTACCAATCACTGATGAAAGACCTGAATCCGAGGAGGactttgatgatgatgatgatgatgaggacaTGAATGGTATCAGAAGACTAGAGGATACAACTGATGATAGAGGTGATGAGAATCTCAACGCTGAATTTGATAATGACCAGTGCATCAATAGTCCAACATCGTCGATCGGGCCTAGTACTCCTTTTCAAAGCAATGTACGTATTAAACTGGAAGGGCCACAAAATCAAGAGGAATCAGAAAATCCCATGAATCTATCTAGTCTcagtataaaaaatttcgCCACCTCATGGCTCACTAGTCATTCCCAGCTACAAGAGCCAACAGATTGGACAGGACAAATTCCTGTCACATCAGTCGCTAATCATCTGTCTGGCTTACCTTTTCCTGGAGCCCTTGCTCACTACCTACCGCTCCCTGGATTCTCATTGGGTGATCCTGGCCAACTTCCACGAATTCCAATGGGTCCAGCTCCTATACGAATTTTCAATCCTGACGCCTACTGTGATCTCTGCAATAAAGAGTTTTGCAATAAGTACTTCCTCAAAACGCACAAAGCCAACAAGCATGGAATTTATGTCGACACACCGCAACAGAATTCAAGTGACAATAATGGaatgcatttttcaattttaccattctcaatgggtaataataaaattgactcTTCGCTACCGCCACCAccagcaccaccaccaccaccactaccACCGGCTAcattaaaaatggaaatgcCTCTGACACAAATGATGTCTTGTGAAATTTGTCAGAAACGTTTCAAGAATGAGGAATCACTCAGGAAGCATAAGCAAAGGTGTCACATTGAAGGAAATTTGAGTGAATCGCAGTCAGATTCACAGGGAGCTAAAGAATACAATTCAACTTCATTTGGGAGTGATGAAAAAGACATTTCGGGAAGTAGTCCAAGTGCAATGGAGTCACTGTTTAAGCAGGAATATGGTGTAGAGCAGGAAGATACGAAATTCATGCCAGCTCCAAGACACTTGTCTCCTCAATCTAGCCAACAAGCGCGTGACTCTGGTTTCAGTATTGATAGACTTCGACGATTAGGTGTTTTAAATATCGAAGCATTTTGTGAAATATGTTGTAAAGAGTAttgcaataaatattttctccgAACGCATAAAATGAAGAGACACGGCATACTCATTCAAGACAGTGAAAAATCACCGAGTAATCCTGGTGCCGCTGCCACTTGGCATCAAATTCAAACAAGTCCACTCAATCTCATTGTCACAGAGAGCACTCCAGGTGGCTCAGAATCCAATGACAAGTCTGAGGAGTATGAATGTAAATCTtgtggaataaaatttcaaacacaTGGACTATATCGTATACATATGAAGAAAATGCACGAAACCAGTGATGATGAGAAATCACTGAAACAGGATATTGAAGAGGAACGTACTGATTCAATTTCTGAAGATCTTCAAAAGCTACAGACCATGATATTACAACTCAATGGTTTAGAATCTAGTAAAATATCAACATGTGAAATTTGTGGACGTGAATGTGAAAACAAATTAGCACTCAAAACCCACATGACATTGGAGCATTCGAGTAATTTACCTGAAGAACAGCCATTGTCACCTAGTCAATTGGTTGAAACTTCATTGAGCAATTCTGGTGGAAATTTGCTATCCTGTACACTCTGTGAGAAAGATTTCATCAGTAATGAAGCATTGAGGCTGCACATAATGGAGGAACACAATCAACAATCATCTCCCATAATGAATCTAGGTTCAAATAGTGCATCGCAAAATCATCCTGTACAGTCAGCCTCGATTCCACCAACATCATCAGTCCCACAAGCCCCTCCTATTCCACCAATTCCTCCACCACCTGACAAAAAACTCTCATCACTGACACCAACCTCAAGTTACTGCGAAATTTGTAATAAAGAACTTTGCAACAAGTACTTTATGAAGACCCATATGCAGAGGATGCACGGTATTGAGATTGAAAATGGTTCGCAAATCGGTGGTGTCATCTGCAACATATGTAACAAGGAATTGTGCAGTAAATACTTTCTTCGTGTTCATAAACATAATACGCATGGAATAGTTGATGACGGTACACCGGTGAATAGTAATAAACAAGAAAACTTTGAAACACTGCCTAGCATCGATGACGCAGCACTGAAACCCGATCAACTTGGCGATCTCAGCCATCGATATTTCACTCATTTCAACGAAGTATGTCCCATCTGTAATCGACGATTTAGAAGTATCAAGTGGCTGAAGGCACATCTTTTGGGTGATCACGGTAAGCCTGGTATTGAAAAATGGCGTGAGTTGGAGCAACAGTATCAGAATACAGCGAGAAGTAGATCAGGAGCTATTGGTTCCTCCAGCAAATTGACCCAACAAAATCCAAATATTAAAATCCCCAATGGCTTGGACATTGGTCAAAACTTGAAGACCAATGAATATGGTGGATTAGGAAATCAGGTTCTCTCTACACTATTCGGTGGTAATGAGGAGCAgcagaataaaaattacagaTGCTCCTACTGTAACTTCACAACACCTGTCCTTCCATTCTTATTTCTACATGAGAGATCACATATGAGCAGTCAGGAGAGCATAACTACTGAAAATAGTTTACAGTGTCCAATTTGCTCTCAAACATTTCCACAACCAGAATTACTGCATCATCACCTAGTGGTACgtcatcaattttctaatttacTGTCTCAATATCAACAATTGGTGGTTGGTGATTCACGTAGTGAAGGGGTTCACGAGCGTCGGGATGAGTCTGATCAAAAAGAAGTGGAATTGAAGGATGAGAGGTCTGTTGATAGTCAGGTGAATTCACCCATTCAATCATCAGtggaatcatcaaaaaatcaaaaagaagAACCTGGTGTTGTTCACGTGACTGCACAGGGTGCGTACAAGTGTGCTGAGTGTGGTTTTGCAACGGCCAATCTTCACAGAATAAAAACACACGTGAAGAAGAATCATAAAGCGAGGGGCGATCCGACGGAGAGCGTTATTTCAGAGCTCAGTAAGACTCTTCGTGATGTTGCTAATAAGCACAAAGTACCAGCCAGTTATGCAATACCACAGGATATGAATTCAAATCCAGATGCAACGATAATGCAGCCATTTATTATTGAAGAGCGGAATTTTACATTTGGCGATGAATCATCCAGCAATGATCAGAGATTCGCACCAGCCCTGGTTTATCTACCGGTACGTACACGTATCAACAGTGTCCTGACTGCTTCCTTTACCCTTAGTCCAGCCTCAATAATTTCATAG
- Protein Sequence
- MASTVAHEGVLGSSELDSEGSSVGDERDAQKRTREDIDSSSPKKRRKQTTPVRVPTSLPITDERPESEEDFDDDDDDEDMNGIRRLEDTTDDRGDENLNAEFDNDQCINSPTSSIGPSTPFQSNVRIKLEGPQNQEESENPMNLSSLSIKNFATSWLTSHSQLQEPTDWTGQIPVTSVANHLSGLPFPGALAHYLPLPGFSLGDPGQLPRIPMGPAPIRIFNPDAYCDLCNKEFCNKYFLKTHKANKHGIYVDTPQQNSSDNNGMHFSILPFSMGNNKIDSSLPPPPAPPPPPLPPATLKMEMPLTQMMSCEICQKRFKNEESLRKHKQRCHIEGNLSESQSDSQGAKEYNSTSFGSDEKDISGSSPSAMESLFKQEYGVEQEDTKFMPAPRHLSPQSSQQARDSGFSIDRLRRLGVLNIEAFCEICCKEYCNKYFLRTHKMKRHGILIQDSEKSPSNPGAAATWHQIQTSPLNLIVTESTPGGSESNDKSEEYECKSCGIKFQTHGLYRIHMKKMHETSDDEKSLKQDIEEERTDSISEDLQKLQTMILQLNGLESSKISTCEICGRECENKLALKTHMTLEHSSNLPEEQPLSPSQLVETSLSNSGGNLLSCTLCEKDFISNEALRLHIMEEHNQQSSPIMNLGSNSASQNHPVQSASIPPTSSVPQAPPIPPIPPPPDKKLSSLTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGSQIGGVICNICNKELCSKYFLRVHKHNTHGIVDDGTPVNSNKQENFETLPSIDDAALKPDQLGDLSHRYFTHFNEVCPICNRRFRSIKWLKAHLLGDHGKPGIEKWRELEQQYQNTARSRSGAIGSSSKLTQQNPNIKIPNGLDIGQNLKTNEYGGLGNQVLSTLFGGNEEQQNKNYRCSYCNFTTPVLPFLFLHERSHMSSQESITTENSLQCPICSQTFPQPELLHHHLVVRHQFSNLLSQYQQLVVGDSRSEGVHERRDESDQKEVELKDERSVDSQVNSPIQSSVESSKNQKEEPGVVHVTAQGAYKCAECGFATANLHRIKTHVKKNHKARGDPTESVISELSKTLRDVANKHKVPASYAIPQDMNSNPDATIMQPFIIEERNFTFGDESSSNDQRFAPALVYLPVRTRINSVLTASFTLSPASIIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00439034;
- 90% Identity
- -
- 80% Identity
- -