Csp013413.1
Basic Information
- Insect
- Coelinius sp
- Gene Symbol
- -
- Assembly
- GCA_035578325.1
- Location
- JAOZGT010000009.1:5792290-5796123[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.3e-05 0.0026 18.6 2.7 1 21 17 37 17 38 0.95 2 12 0.00012 0.014 16.3 4.4 1 21 61 81 61 82 0.94 3 12 0.0043 0.47 11.4 1.2 1 14 90 103 90 106 0.92 4 12 0.00053 0.058 14.3 5.5 1 23 123 146 123 146 0.96 5 12 0.001 0.11 13.4 6.3 1 21 165 185 165 186 0.94 6 12 3.5e-07 3.8e-05 24.3 3.3 1 23 194 217 194 217 0.97 7 12 3e-05 0.0033 18.2 2.7 1 21 255 275 255 276 0.94 8 12 0.00067 0.073 14.0 1.4 1 23 284 307 284 307 0.97 9 12 3.2e-05 0.0035 18.1 2.1 1 21 366 386 366 387 0.94 10 12 0.3 33 5.6 0.6 1 13 395 407 395 412 0.84 11 12 0.048 5.3 8.1 1.2 1 21 425 445 425 446 0.87 12 12 0.91 99 4.1 4.7 1 23 454 476 454 477 0.90
Sequence Information
- Coding Sequence
- ATGACAAAATGGGAATTTGTTGCAGTTAATCAACAAGCCTCGAATCGTCATCAGTGTGCAACATGTGGAAAATCTTACAAACGTCGACCACACTTGTATCGCCATATCAAATACGAATGTGGAGTATCATCAATCAAGTGGCAATTTGTTGCAGTAAATCCTCAAGTTTCTGAAGATCGTCATCATTGTTCAATATGCAGAAAGAGCTACAAACATCGAGGTGATTTGACTCGTCACATCAAGTACGAGTGTGGAAAAACAAAACGATTTAAATGTCCACACTGTCATCGTAATTTTAGTGATAATCATCGTATTACAACATTCGAAAAGAGTTATGAACAAGGAATTACTCAGTATAGATTCAGATACATGTGCCCAACGTGTCACCATAGTTTCTCCGAACGCTGCAATATATGGAGACACATGAGGGGCATGCATGGAAGCACAGTAATCTGGGAATTCTATACCACGAATAATGATCATcaaaatcgtcatcattgttTCACCTGTGATAAAAGTTATAAACATAGAAATCATTTGATTTCTCATATGAAGAACGAATGCGGAATGGAAAAGAGATTTCGGTGTCCTCAGTGTAATCACAATTTTAGCAAACGCTCTAATTTATGGAAACACATGAGAAATGCTCATAAACATTCTGAATTGTATTGTATTGATACTGTCACTAATCAGACCTTGTATTATGAAAAAAAGCCAATGGAGTTGGAGTTTGTTGCAGTTAATCCAGGTGTAACGAATCGTCATTATTGTGCAGAATGtggtaaaaattataaacgCCGAACTCACTTGATTCGTCATCTTAAATATACATGTGGTGAGACTAAGGGATTTCGCTGTGGCCACTGCAGTCAGGACTTTAGGCAACGGGCACAAACATGGATACATATAAGAAATGTTCATCCTCATTCTGTGCTTTATTGTATCGACACTAAAACCAAGGAGAAGTACTATTATCCCCTGGCGAATAAAGCAATTAGACATAATCAGACATGTTTAATTGGAGAATATTTCGAGAATTGGGAATTTGTACCAGTGCAATGTCCACCAGTGAGTGGTAATGAGACTAATAATCGTTACCACTGTCTACGGTGCGGAAGAAGCTATAAGcgtcgagataatttgaatcGTCATGCCAAATACGAATGTAACATGCCCAATCGCTTTCGCTGTCCTCACTGCCGACAGGATTATCgTCGTTATTTATCATTGGATAAGGCCTCCCTGTACACGGATGACGATAGAATTGGTGCATTCAAGTGTCCAAGCTGTGATAAAGTATACAAATGGCGTAAATCCATGCTGGCACATTTTAGACATCAGTGTAAAAAACCACCGAGATTTGAGTGTACACATTGTgaagttaaaaattatcaaaaaggACATATTATGAGACATCTTATTGTTCATCATCCAGCATTGCCACAAGTTTATTATGACGCTAAAGCCAAGACCCGAGTGAATCTTCGACCCATTGGACATCCTTGCTAa
- Protein Sequence
- MTKWEFVAVNQQASNRHQCATCGKSYKRRPHLYRHIKYECGVSSIKWQFVAVNPQVSEDRHHCSICRKSYKHRGDLTRHIKYECGKTKRFKCPHCHRNFSDNHRITTFEKSYEQGITQYRFRYMCPTCHHSFSERCNIWRHMRGMHGSTVIWEFYTTNNDHQNRHHCFTCDKSYKHRNHLISHMKNECGMEKRFRCPQCNHNFSKRSNLWKHMRNAHKHSELYCIDTVTNQTLYYEKKPMELEFVAVNPGVTNRHYCAECGKNYKRRTHLIRHLKYTCGETKGFRCGHCSQDFRQRAQTWIHIRNVHPHSVLYCIDTKTKEKYYYPLANKAIRHNQTCLIGEYFENWEFVPVQCPPVSGNETNNRYHCLRCGRSYKRRDNLNRHAKYECNMPNRFRCPHCRQDYRRYLSLDKASLYTDDDRIGAFKCPSCDKVYKWRKSMLAHFRHQCKKPPRFECTHCEVKNYQKGHIMRHLIVHHPALPQVYYDAKAKTRVNLRPIGHPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -