Csp004326.1
Basic Information
- Insect
- Coelinius sp
- Gene Symbol
- -
- Assembly
- GCA_035578325.1
- Location
- JAOZGT010000002.1:8681906-8684258[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.68 74 4.5 0.1 3 23 111 132 110 133 0.94 2 14 0.0063 0.68 10.9 2.0 2 23 137 159 136 159 0.94 3 14 0.0007 0.076 13.9 0.2 2 23 270 292 269 292 0.95 4 14 4.6 5e+02 1.9 0.2 1 19 302 320 302 322 0.80 5 14 0.12 13 6.9 6.6 1 23 328 351 328 351 0.97 6 14 0.68 74 4.5 0.3 2 20 365 383 364 386 0.78 7 14 0.00035 0.039 14.9 2.0 1 23 394 417 394 417 0.96 8 14 1.2e-05 0.0013 19.5 3.9 1 23 423 445 423 445 0.98 9 14 0.0013 0.15 13.0 2.4 2 23 449 471 448 471 0.95 10 14 1.2e-05 0.0014 19.4 6.5 1 23 481 503 481 503 0.98 11 14 0.0002 0.022 15.6 0.7 2 23 510 531 509 531 0.97 12 14 6e-06 0.00066 20.4 4.3 1 23 536 558 536 558 0.97 13 14 6.5e-05 0.0071 17.2 0.7 1 23 566 588 566 588 0.99 14 14 0.00015 0.016 16.0 1.3 1 23 594 617 594 617 0.95
Sequence Information
- Coding Sequence
- atgGAATCAACTAAACCCTCGAGAGTATGCAGATTGTGTTTAAAAACTGGTCCAGGCTATAGATCACTTTTTGAAGAGAAAGATAAGATTGCTGACAAAGTCAGCAAGTGTTTACCAATTTTGGTGAATCCAAATGACAAATTACCAGGTCACATATGTCCCCAGTGTCTTCGTTCATTGAACATAAGTTATAAACTATTGATTCAAGCAATTGAAACCGATGGAAAATTGCGACAACAATTGTCCGAATCCCAAGACCAACAAAATCGTGCAAATGCCTCGAGATCTCAAGCATCCCCGAGGGAAATGGATGCGAGTAATCCAGGAATTTGTGGTATTTGTGTGATTCGTTTTGAGGATGGAGGAGCATTCGACAGTCACATGGAGATGTTCCATCATTCCAAATGGGTCTGTAATCTCTGTCAGAGTAATTTTACAACGTCAGATGAATTACTTCAACATAAACACAAGAGTCATTATGATAATATCGATAATGCTGGTGTGTCAGATAATTTCATGGATTCAGGGACAATTGACATAAAAGAAGAGAAGATTGCTTCAGCTTCTGAGCAATCTgatggtgaaaaaattgataataaaagtTCGGAGAAGAGTCGAAAATCGGCCAGAATAGAGAGAAAACAAAAAGCTCCGGATGATGGAAAAGTCAAGGAGAAATCTGTGAGGAAAGAGACAAAAGAGAAAACTaaaagatttgaaaaattcaattgtaaaatttgtaatttattgattgaaaatgataCTACTAGGACTGAACACAGCAAACTTCATGAACCTTATGAAGTTAAATGTGGTGAATGTGGAGATGAATTTAGAACAGCTTATGGCCTGTGTGTTCACCAACGAGATGCCCATAATAGTAATCCAGAGAGgccaattaaatttttttgtaaacttTGTAATAGAATGCTGTGGGATATGAGGTCCTTGAGGGTACATGAGAACTGTAAAAAACCTAGGCATACTTGCAAATATtgtctcaataatttttgtgttAAAAAACTCCTCAGGCTACatcaaaataaagaACATCGTGAAGCCATGATGAACGATTTgactgtaaaaaaaatgagttgtgAATTCTGTGAGAAGATATTTGTTGATAAGAAAATCTATTATGATCATGTATACCTCCACAGTCGTTCACTCGTTTATCGATACCACTGTAAATTCTGTGAGAAAGACTTTGGCAGTTCATCGTCCATGAAAAATCACATTGAATCTGCGCACGATAAAATTGCTAAATACGAGTGTCAAACTtgcaagaaaaaattttacaacaaGAAAAATCTGCAAACTCATGAGAAAATTCACTTGAAACTTCACTGCAAacgttgtaaaaaaaaattcaggactGTGGAAGAAGTTGAAGAACACATGAAGAGCATTCACGATGTTCCATTGAAGATAAAACGAATGTATTGTTGTCCACAttgtgacaaaaaatttaGCAGACGAAGTAGTATGGAGGACCATAAGAATACTCACAGTGGAAAGACTCCACAGACTTGTccaatttgtaaaaaaaaatttagAACCTATGCAGCACGTTGGGCACACTATCAGAGACACGAATCTGATGGATTTTACTGTGattattgtcaaaaaaaatttatcaataAGAGACACCTGAAGACACACATAATGGCTCATCTTCCCCCTGAAGAGTGGAAATACACATGTGAAATATGCGGTGCTCGTTTCCCCCAGATATTTCGTCTTACGAATCACAGAAGGAAACATactggagagaaaaaataccTCTGTGATGCTTGTGGCTCAAAATTCGGCCAGAAATCTCATCTCGATAAACACATTAGAACTCTACATTTTGCGATCCCAGAGAATGATCAACAAAACAGTAACGATAATCAAccgattttttga
- Protein Sequence
- MESTKPSRVCRLCLKTGPGYRSLFEEKDKIADKVSKCLPILVNPNDKLPGHICPQCLRSLNISYKLLIQAIETDGKLRQQLSESQDQQNRANASRSQASPREMDASNPGICGICVIRFEDGGAFDSHMEMFHHSKWVCNLCQSNFTTSDELLQHKHKSHYDNIDNAGVSDNFMDSGTIDIKEEKIASASEQSDGEKIDNKSSEKSRKSARIERKQKAPDDGKVKEKSVRKETKEKTKRFEKFNCKICNLLIENDTTRTEHSKLHEPYEVKCGECGDEFRTAYGLCVHQRDAHNSNPERPIKFFCKLCNRMLWDMRSLRVHENCKKPRHTCKYCLNNFCVKKLLRLHQNKEHREAMMNDLTVKKMSCEFCEKIFVDKKIYYDHVYLHSRSLVYRYHCKFCEKDFGSSSSMKNHIESAHDKIAKYECQTCKKKFYNKKNLQTHEKIHLKLHCKRCKKKFRTVEEVEEHMKSIHDVPLKIKRMYCCPHCDKKFSRRSSMEDHKNTHSGKTPQTCPICKKKFRTYAARWAHYQRHESDGFYCDYCQKKFINKRHLKTHIMAHLPPEEWKYTCEICGARFPQIFRLTNHRRKHTGEKKYLCDACGSKFGQKSHLDKHIRTLHFAIPENDQQNSNDNQPIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -