Csp010076.1
Basic Information
- Insect
- Coelinius sp
- Gene Symbol
- gtf3a
- Assembly
- GCA_035578325.1
- Location
- JAOZGT010000006.1:6876128-6880740[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.44 48 5.1 0.7 3 23 707 727 705 727 0.95 2 17 0.22 24 6.1 0.2 1 19 733 751 733 754 0.91 3 17 0.44 48 5.1 0.9 2 23 760 781 759 781 0.95 4 17 4.3e-05 0.0048 17.7 1.2 3 23 790 811 789 811 0.98 5 17 0.0081 0.89 10.6 1.4 1 23 818 841 818 841 0.92 6 17 8.8e-05 0.0096 16.8 0.7 1 23 847 870 847 870 0.94 7 17 0.33 36 5.5 1.7 2 23 878 898 878 898 0.96 8 17 1.3e-07 1.4e-05 25.7 2.1 2 23 904 925 903 925 0.97 9 17 2.1e-06 0.00023 21.9 0.2 1 23 931 953 931 953 0.99 10 17 0.004 0.44 11.5 2.8 2 23 965 987 964 987 0.95 11 17 0.29 32 5.7 1.4 1 23 993 1016 993 1016 0.92 12 17 0.027 2.9 8.9 2.9 2 23 1038 1060 1037 1060 0.95 13 17 0.0001 0.011 16.5 0.6 2 23 1067 1089 1066 1089 0.97 14 17 3.8e-05 0.0041 17.9 1.7 2 23 1097 1118 1096 1118 0.97 15 17 0.0016 0.18 12.8 2.4 1 23 1124 1147 1124 1147 0.96 16 17 0.3 33 5.6 3.2 2 23 1154 1175 1153 1175 0.96 17 17 0.01 1.1 10.3 2.1 1 23 1181 1203 1181 1203 0.98
Sequence Information
- Coding Sequence
- atgagtgaCCAAACTGCGATATCTCTTGATGACTGTCatgatgacaaaaataatgacaatttGAGTGAAGAGACTcgaaaaaatgtaatttataCCTTGGATGATAATGTAGAACTGTTGAGTGCTAGATGTGATGAAGAGGATGGTGGGAGTAATTTTACAGATGCCAACCCGAGCATAATGCACACCTACAAGCGGaccccaccaccaccagagTCATCTCCTCCATCAAAAAGAGACCACAATTACACCGGTAAATCCTCAACCCCGGAAAAGCCTTCCACCCAAGTAAAAACCATAAACGACTTGAAGAAGGTCCTCCCAAAGTTAAAACTCTTCTCCCCAGAAGTCAACACTCTAAAAGAGCTCACCAAGATCTCCAATCCCCTCAAGAAAACCTCTCCCCACACTCGAGAACAACTCAGAGACTACTGCAGGACATGTGCAGGCCTAAAAATTCCCTTAGTCGATATATTCGGTGAAAAAGGAATACAAATGCGTTTGAATCAGCAAATGAAGCACTTGGAAGAGATTGACGAGCACGATGGCCTATCCACTCAGATGTGTATGGACTGCATCTGtgatttaaaaatgagctACAAGTTCTTTATGCAGATAAAAAAGGCCCAAGTGAAGCTAAAATCCTTGATAAACATCCCAAGCACCGAAGAAAAGTCTCGAGTGATAACAATACCTGACAGTCCAATAAAAAAGTCCTCAATTGAGCCAATCAAGCCCCAATCAAGCCAAGATGATCCACCACGTTCATCAACTCCACCTGCTCCCACCCCAGCCCCTCCAGCCCTCAGTGACAACGAATCTCTCGAAGAATTCGATCCTGACGACTCCCCAATGGACAACGAGCCTCTCCACTCTCCAGAACCATACGAAGGCGCAAAAGAATCTGAAGAGCCTGAAGTACCTCCAAAAACTCCAGAATCAAACCCAGAGCCAGCAATCACTGAAGAATGCGTCAAAACGGAAGTAAAATCCAAATCGGCTTATGAATACAATAGTGAGTTGAATACATACGTAAAATTGGATCCTCATAATCTTCCACCAGCAGCTGATATTGAAGAGCTAGAGGATCAGCTAGATAATCATGATAAAGTTGTTGAAAGAGATGAACAAGTCGATACAGTCAATTCGCAAAAGCAGAATTCTTTAAAAAGAAAAGCTCCAAGTTTAGGGAAGGATTCTCTGGACTCTCAAAATCCCTCAGAATCTACTAATTCTCTTTTAAAATCTGTGAAAGATGCGAAGCTTCAGAAATTAATGGGAAATCCTTTGAGTGTATCTCCATCTAACGAGGAAGGAATCATGTACGTGACAGTCAAGGGAGCAAAACCAAATGAATTGCTTCTAGTAAAAGTCAAGAAGATGGATAAAAATGGGGATAAGAAGGATGAGAATAAATCTCTAGTGATGAAAAAACCGTTTGACATGCCTTTGAAGACAGTAGAAAAAGTCATAAAAGCTCTTCCTTCAAAACCTCCTGATTCTCCTAAGAAATCTGACAATTCTAGAGATGCTATAATCGAACAGCAGATAGAGCAGTATAAGAAAAAACGAGAGAAGATTCTTGGGGCAGATTTTCGGGCAAGTTTCCCAAATGCTCTTAAATACGAAGATGGAGCTGTCAGATTTGTAAATCCAGCCCAGAGTATATCAGAAACATCGGACGATGGTGGGAGAGGAGAATTGAGTGATGGAGAATCCAAGAAATATCCAAAGATAAAATTCAGAACATACAGTTCAAGGGAAACTGATGAAAATCGTCCATTATCCACTAAAGAATATCTAGCAAAATTTGCGAGACTCAAACGAAAATGGGAGGAGGCAAAAGCCAAAAAAGCTGCTTTACAACAGGAATTGAGTGCTTCGTATACTGAAgggaatttagaaaaattgactAGAATTCTtggtgagagagagaagaatCTTCAAGATTTTCAGGAATATCTCAGACAGCGTAAGATTGTTATAACAAAATTGAAGGATGAAGATATAATATCGTTGTATGAGGGAAGAACTCCctcagaatttaaaaaaaaatttccagattTGATTGACGAAAATATACCAATTGATGGTTCCATAGATTATGATTTCTTAGACTGTGACTACTGTATTCAAACTTTCTCCCATCGAGAAATACTCGAGGAGCATTTAAAGTTACATGATTACAGAATTTTATACTTCTGTGAAGACTGCGGTGgtgaatttccaacaaataaaACCAAAAGAGCGCACAATGCAacttgtataaaaaaattagtctgCAAATATTGTGACTTAATGCTAGAGTCAAGAGGAAAAAAGCGTCAGCACGAGCAGAAACACTGCGATCAAATTTATGGACAATTGTGTGACATATGCGGTGAGAAATTTAAACACCAAGGTACCCTAGATCAACACATAAAAACTCAACACATGAGCTGGGAAAAAGTTTTTGAGTGTCCAAAGTGTCCTAAAAAATTTGCCTTCAAACAAAAATTAAGTTTTCACGTAAAATCTGTTCATACAACTATGAGAGCTTATTTGTGTGAAGATTGTGGTGCTGATTTTAAAAATCCAGCTTCTTTGCGTCATCATAGAATCAGAAAACATCAGCCAACTGGTAATAAAAGGGAGTGTCAAGTATGTCATAAAATGGTACCTTTCTACAGTCTTTCAAAACACATGTATACCCACAAAGATTATACCATACAATGTCCACACTGTGACAAAATGTTCAAGAACTCTTCAACCCTCAAGCAGCATGTTCGAATTCATGAGGATCAGCGTCAATATCGTTGTGACACGTGTGGTGTTGGTTTTAATAGAAGAGATGGATTAAGATTGCACATGAGGGTGCATGAGAAAACTGACAGTAGAGCATTGAAAGAGTGTTCCTGTCAAATTTGTTCTGAAAAATTTCCCAACCACTCGATGCTAGTAATCCACAGAAACAGAGTACATAAAGATGGAAAACAGTATACATGTAAGATTTGCAATAGGTCAATGTTATCTACAAGATCGTTAGAATGGCACATGTCACATATCCATAACGAAACATCTCGAAGTCTTTCTAATGAAAGAGCTGACTCACCAGTGGAGAAGACACGAGTGACCTGTAATCATTGCTTGAAGACCTTCAAAACCGAAATGATTCTCCGTACTCATATTAAGAACACTCACATGGAGAAAAATCCAGTTAAATGTCCAGATTGTGAAGTGACTTTTACGTCAGAAGTAAGATTACGGCATCACATGATGGTGACACATAACAGACTTGAGGGCACACTGACCTGTCCCCACTGTCCTAAACGTTTTGTCAATCAACTCAGACTCAAAACACACATGATTTCACATTCTGAAGATAGGCCATTTACATGTGAAATATGTGGCTTCAATCTGAAGACCAAGATACAATTGATAAAACATCATCAGAATAGACATAGTGATGAACGACCTCTGCAATGTAGATACTGTCCTTGGAGATGTAAACAAGTTTCTGCTCTTGTTTGTCATGAGAGAACTCATACCAATGAAAGACCATATTCCTGCGTTGTTTGTAAGCAAAGATTCAAGTATTTGGGTGATAAGAATAAGCATGAGAGGAGGCATGAGAGTTTGGGTGGTTCTGGATTTAAGAGAATTGTTACTGGAAGAAATGCTAAGAAGGTTAAGGGCGAGGCTGAGGGAGATACTTCAGAGGATCCGGATCAGGAGATTGAGGATCAGGAGATGATTGAGATGGAAGAGGAGTATGAGATTGAGGGACAATTGGCGGAGGAGTatgaggagggggaggagTTTGATGCAGAGGAGCAGATTGTCAAGTATGAGGAACAGGAGGACATTGAGGGAGAGTATGAGGAGGAGTATGAGCAGGAGTATGAGGAGACTTCTAGGGAGGCTTCAGAGGCTGCTGAAGTGATTATGAATATGGAGGATGGAACTGTTTATACAGAGGAGGTGACTGCTGATAATATTGAAGGGGCGGAGATGATAACGGGTGAAATTATGACCAGTCAGATCCTTCAGACGGGAACTGTAGTGCATATTCAGCAGCAGGATGATGATGGCAAGATTCAGGTCATTCCTGTTATGTTATCGATACCCGATTTGACGGATGGAGGGGGCGAGGTCAATCTTGCTACTGCTTCGATTATGTATAATAGTGGGTGA
- Protein Sequence
- MSDQTAISLDDCHDDKNNDNLSEETRKNVIYTLDDNVELLSARCDEEDGGSNFTDANPSIMHTYKRTPPPPESSPPSKRDHNYTGKSSTPEKPSTQVKTINDLKKVLPKLKLFSPEVNTLKELTKISNPLKKTSPHTREQLRDYCRTCAGLKIPLVDIFGEKGIQMRLNQQMKHLEEIDEHDGLSTQMCMDCICDLKMSYKFFMQIKKAQVKLKSLINIPSTEEKSRVITIPDSPIKKSSIEPIKPQSSQDDPPRSSTPPAPTPAPPALSDNESLEEFDPDDSPMDNEPLHSPEPYEGAKESEEPEVPPKTPESNPEPAITEECVKTEVKSKSAYEYNSELNTYVKLDPHNLPPAADIEELEDQLDNHDKVVERDEQVDTVNSQKQNSLKRKAPSLGKDSLDSQNPSESTNSLLKSVKDAKLQKLMGNPLSVSPSNEEGIMYVTVKGAKPNELLLVKVKKMDKNGDKKDENKSLVMKKPFDMPLKTVEKVIKALPSKPPDSPKKSDNSRDAIIEQQIEQYKKKREKILGADFRASFPNALKYEDGAVRFVNPAQSISETSDDGGRGELSDGESKKYPKIKFRTYSSRETDENRPLSTKEYLAKFARLKRKWEEAKAKKAALQQELSASYTEGNLEKLTRILGEREKNLQDFQEYLRQRKIVITKLKDEDIISLYEGRTPSEFKKKFPDLIDENIPIDGSIDYDFLDCDYCIQTFSHREILEEHLKLHDYRILYFCEDCGGEFPTNKTKRAHNATCIKKLVCKYCDLMLESRGKKRQHEQKHCDQIYGQLCDICGEKFKHQGTLDQHIKTQHMSWEKVFECPKCPKKFAFKQKLSFHVKSVHTTMRAYLCEDCGADFKNPASLRHHRIRKHQPTGNKRECQVCHKMVPFYSLSKHMYTHKDYTIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHEKTDSRALKECSCQICSEKFPNHSMLVIHRNRVHKDGKQYTCKICNRSMLSTRSLEWHMSHIHNETSRSLSNERADSPVEKTRVTCNHCLKTFKTEMILRTHIKNTHMEKNPVKCPDCEVTFTSEVRLRHHMMVTHNRLEGTLTCPHCPKRFVNQLRLKTHMISHSEDRPFTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCVVCKQRFKYLGDKNKHERRHESLGGSGFKRIVTGRNAKKVKGEAEGDTSEDPDQEIEDQEMIEMEEEYEIEGQLAEEYEEGEEFDAEEQIVKYEEQEDIEGEYEEEYEQEYEETSREASEAAEVIMNMEDGTVYTEEVTADNIEGAEMITGEIMTSQILQTGTVVHIQQQDDDGKIQVIPVMLSIPDLTDGGGEVNLATASIMYNSG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -