Csp013415.2
Basic Information
- Insect
- Coelinius sp
- Gene Symbol
- -
- Assembly
- GCA_035578325.1
- Location
- JAOZGT010000009.1:5797448-5801822[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.011 1.2 10.2 6.2 1 21 23 43 23 44 0.94 2 15 1.8 1.9e+02 3.2 0.2 1 7 52 58 52 62 0.89 3 15 0.0015 0.17 12.8 7.9 1 21 77 97 77 98 0.94 4 15 0.01 1.1 10.3 4.6 1 23 106 128 106 129 0.96 5 15 7e-05 0.0077 17.1 1.1 1 20 161 180 161 182 0.94 6 15 0.00022 0.024 15.5 2.5 1 23 190 213 190 213 0.96 7 15 1.7e-05 0.0019 19.0 3.7 1 21 239 259 239 260 0.94 8 15 0.0054 0.59 11.1 1.6 1 23 268 293 268 293 0.97 9 15 0.0099 1.1 10.3 0.5 1 19 334 352 334 354 0.96 10 15 5.9e-05 0.0064 17.3 4.4 1 23 363 386 363 386 0.98 11 15 0.0007 0.076 13.9 2.3 1 19 408 426 408 429 0.96 12 15 3.6e-06 0.00039 21.1 3.1 1 23 437 460 437 460 0.98 13 15 0.00029 0.031 15.1 3.3 1 21 490 510 490 511 0.94 14 15 0.058 6.4 7.9 7.7 1 19 533 551 533 557 0.96 15 15 0.00063 0.069 14.1 8.3 1 23 562 585 562 585 0.98
Sequence Information
- Coding Sequence
- ATGGAGGTACACTGGACAGGCAGTAGAAATTGGAGGCcaagaaatattggagatagggaaaaacaatttttttgtccaaATTGTCATCGTGGATATAAACATCGATCACATATGTACAGACATCGTCAGTATGAGTGTGGTAAACCACCGAGATTTCAGTGTCCTCACTGTAATGCCAGAAGAATACAAGGAagaatgatttttaatgaatttggGGGTGATAAACGTCACTACTGTCCCAATTGTGGAAAGAGCTATAAACACAGATGTCATATGCAACGGCATTATAAACTCGAGTGTCAAACACTAGGAATTTATCAATGTCCCTACTGCTGTGTGCGATTCAAGAGGAAGGCATATGTGTGGACTCATATTAATCAACATCATCCCAATAGCGAGCTTTATTGTATTGATAgAGATTCCTGGGAACACTGGGATGTCATAGAGGATAATGATACCACAGGTATCAATAATACACGTTTCTATTGTCCAAATTGTGGAAAAGATTATGGCTATCGTCACAATTTACGACGTCATGTATCACGAGAGTGTGGAAAAATACCTAGATACCAGTGTCCATACTGCACATCTAGAAGTAAACGTCAGGATAATTTGTATGCACATATCAAAGGATGTCATCCTGAAGATATGTGGGATAATTGGAAGCCAGTGCCAATAAGTTATACATCTATGAATGAACAAACACCGCATCGTCATTATTGTCCAAAATGTGGAAGGAGTTATAAAAGACGAACACACTTGTCTCGTCATTATAAATGGGAATGTGGTGTACCAAGATGCTTCAGGTGTCCCTATTGCTCTCCCCATCAAGATTTTCGTCAAAGATCACAAGTTTGGACGCATATTAGAAATTTACATAAACGCGCTACTCTTTATTGTCTCGATATTGTGGCTAATGAGAAATTGTATCATCCTGGAGTGCGAGAAATATCGGTCAACTGGGAATTTGTTGCAGTGGATGCGGAAAATTCAAATCGTCACTATTGTGCAGTATGTGGAAGAAATTACAAAAGGCGACCTGATTATTTAAGACATTGCAAGTACGAATGTGGAAGGGAACATAGATTTCGTTGTCCATATTGCCAACAGGATTTTACTCAACGCTGCAACGCATGGAAGCACATGAGAAAATATCATGGACGAGATAAATCGATGAATTGGAATATCGTTGCAGTCGATCCACTAAATCCAAGTCATCGTCATCAGTGTACAGCATGTGGAAAGTCTTATAAACGTCGACCTCACTTGTATCGTCATTGCAAGTACGAATGTGGAAGGATACCTAGATTTCGTTGCCCATATTGCCAACAGGATTTTACTCGACGCTTCAACGTATGGAAGcacatgagaaaatttcatggacGCGCTGTGCTCTATTGTATGGACCGAGATAAATCGATGAATTGGAATTTCGTTGCAGTTGATCCACTAAATCCAAGTCATCGTCATCAGTGTACAGCATGTGGAAAGTCTTATAAACGTCGACCTCACTTGTATCGTCATTACAACTATGAGTGCGGAGGATCACCGGGAAACTGGGAATTTGTTGAAGTGCCATTGGAAACAGTAAATCGTCATAATTGTACAAGATGCGGAAAAACATATAAAAGAAGACCTCACTTTCTACGCCATTGCAAATATGAGTGCGGTGTGCCAAAGAGATTCAAATGTCCTCTGTGTCATCGAAGTTTCAGACAACGTTGCACTGTATATGCACACATTAGAACCTGTCATAAACGTGCTGCACATTATTGTATTGATACTCAGACTAATGAGAAGTTGTATTATTACAAGAAGACTGCTAGAGATGGATAA
- Protein Sequence
- MEVHWTGSRNWRPRNIGDREKQFFCPNCHRGYKHRSHMYRHRQYECGKPPRFQCPHCNARRIQGRMIFNEFGGDKRHYCPNCGKSYKHRCHMQRHYKLECQTLGIYQCPYCCVRFKRKAYVWTHINQHHPNSELYCIDRDSWEHWDVIEDNDTTGINNTRFYCPNCGKDYGYRHNLRRHVSRECGKIPRYQCPYCTSRSKRQDNLYAHIKGCHPEDMWDNWKPVPISYTSMNEQTPHRHYCPKCGRSYKRRTHLSRHYKWECGVPRCFRCPYCSPHQDFRQRSQVWTHIRNLHKRATLYCLDIVANEKLYHPGVREISVNWEFVAVDAENSNRHYCAVCGRNYKRRPDYLRHCKYECGREHRFRCPYCQQDFTQRCNAWKHMRKYHGRDKSMNWNIVAVDPLNPSHRHQCTACGKSYKRRPHLYRHCKYECGRIPRFRCPYCQQDFTRRFNVWKHMRKFHGRAVLYCMDRDKSMNWNFVAVDPLNPSHRHQCTACGKSYKRRPHLYRHYNYECGGSPGNWEFVEVPLETVNRHNCTRCGKTYKRRPHFLRHCKYECGVPKRFKCPLCHRSFRQRCTVYAHIRTCHKRAAHYCIDTQTNEKLYYYKKTARDG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -