Csp004338.1
Basic Information
- Insect
- Coelinius sp
- Gene Symbol
- -
- Assembly
- GCA_035578325.1
- Location
- JAOZGT010000002.1:8725338-8727258[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.13 14 6.8 0.8 3 23 120 141 118 141 0.95 2 15 0.0016 0.17 12.8 1.3 2 23 146 168 145 168 0.93 3 15 0.55 61 4.8 0.1 3 23 233 253 231 253 0.95 4 15 0.0009 0.098 13.6 0.2 2 23 259 281 258 281 0.94 5 15 0.71 78 4.5 1.1 3 19 293 309 291 311 0.93 6 15 0.00091 0.1 13.6 1.5 2 23 318 340 317 340 0.96 7 15 2.1e-05 0.0022 18.7 1.3 1 23 353 375 353 375 0.98 8 15 0.003 0.33 11.9 0.8 1 23 383 406 383 406 0.85 9 15 1.8e-06 0.0002 22.0 2.8 1 23 412 434 412 434 0.99 10 15 0.09 9.9 7.3 0.5 2 23 438 460 437 460 0.90 11 15 6e-06 0.00066 20.4 3.0 1 23 470 492 470 492 0.99 12 15 0.0029 0.32 12.0 4.0 1 23 498 520 498 520 0.97 13 15 3.8e-05 0.0041 17.9 4.5 1 23 525 547 525 547 0.97 14 15 0.00027 0.029 15.2 2.6 1 23 555 577 555 577 0.98 15 15 0.0061 0.67 11.0 1.2 1 23 583 606 583 606 0.95
Sequence Information
- Coding Sequence
- atggattcaaatattgaagaaaatgtgtGCCGATTGTGTGCAAATCGTGGAAAAGATTTACATTTCATCTTCGATTCAGATTCTCCTTCAATATTCGTCAAAATTACCAATTGTTTACCAATAGAGATTAAAAAAGACGATCAACTACCATCTCACATATGTTCTGCATGTCTTGAAGCCCTAAATATAAGTGATAAACTACGAGCCCAATCCCTAGTAGCTGATGAAATATTGAgacaacaattgaaaattgtgctgattgatgaaataaagCAAGAGAAGGATGATACTACAGATGAAATTAAACAAGAGAAAGATGATGAATCAGAGGAGATTGACACTACTGAGCAATTATTTTGTGGCATATGTGAAGTTTATTTCGATGAGAGAAATGATTTTGATCATCACATGAACTCTTCCCACTCTTCTGAGTGGATATGTAATATTTGTAATGAGGATTGCAAGACATCGGAAGATTTACTCCGTCACAAATATAAAGAGcattatgaaattatcataCCCACTGATGAAACTGATAAACCTGaaaattctgatgattcaGCGAGTGAAGATGATTCAGATAATTATGTTAATGCAAATGAATCTATTGaaattaaagaagaaaatttaccAACTAATTCGGAAATCACTGGATCAATCATACAATCTATTGATgaaggaaaaagaaatataattTGTGATATTTGTAACGTGACAATTGCAACTGATAAATTAATGTCTCTTCACCTAAAAATGCACGAGCGCAGACAAATAACTTGTCCCACTTGTTTTCGTGAATTTCCCTCCCCCTACGATCTATTTCTTCATAAACAAAATGTACATAAAGTATTTGTTAACCAAAAGATGAAATGGTTCTGTGAAAAATGTGAGAGATTCACAACGAGTGttcaatttttgagaagacacaaattttgtacaaaaattaaattaaattgtaaatgGTGTACCATGGGATTCTTTAAGAGATCTGAATTGCAAATACATCAGAAGAAGAATCATTATGATGATGTGATGAAGGATCCAGAGTCTGAGAAATTTGAATGTAAAACTTGTGGAAAAAGTTATGTAGAAGAATCATATTACAATTCTCATGTACGTAAACATCAGGCTAAGGACGAAGGTAAATTTACATGTCCAACTTGTGAAAAAACATTCACAACAGCTGCAGTAATGAAGTGTCATATAGAAGTTATTCATGAGAAAAAGCCAAAATATGTGTGTGATATTTGTTCCAAGAGCTTCTGTGGCTCGAGAAATCTCCAGGTACATAGGAGAAGACATGCAAGTCAGACGTGTCAAGAGtgtggagaaaattttgaaaatacaaGAATTCTTGCTacacatttattcaaacagCATAACATATCTGTACCATCCACTGGTAAATATTCATGTAAATTGTGTGGTAAAAGATTCCGCAAGTTACGCCTTTTGAAGGATCACAGAAATACTCATACTGGCACAAGACCACATACGTGTGAAActtgtcataagacatttaGAACATATGCAGCACGATGGGCACACGAACAGAGACACAAGAATGGTGGTTTTATTTGTGATTTCTGCAAGcacaatttcactgataaaaacAATCTCAGGAGACATATATCTCGTCATTTGCCACCTGAATACTGGCGATATGAGTGTGACATATGCCAGAAGAAGATGCAGAGACTTTCCCACTTGCAGCGTCATTTGGAAAGACACGAAGAGACACATCCATATAGATGTAATATATGTGGATTTAGATTTTTGAGTAAGGGAGCTATGACATCGCATAAGAACCAGACGCATAACGAAATTCTGTCGAAAGGTGTTGATCAAATTACATTTTAA
- Protein Sequence
- MDSNIEENVCRLCANRGKDLHFIFDSDSPSIFVKITNCLPIEIKKDDQLPSHICSACLEALNISDKLRAQSLVADEILRQQLKIVLIDEIKQEKDDTTDEIKQEKDDESEEIDTTEQLFCGICEVYFDERNDFDHHMNSSHSSEWICNICNEDCKTSEDLLRHKYKEHYEIIIPTDETDKPENSDDSASEDDSDNYVNANESIEIKEENLPTNSEITGSIIQSIDEGKRNIICDICNVTIATDKLMSLHLKMHERRQITCPTCFREFPSPYDLFLHKQNVHKVFVNQKMKWFCEKCERFTTSVQFLRRHKFCTKIKLNCKWCTMGFFKRSELQIHQKKNHYDDVMKDPESEKFECKTCGKSYVEESYYNSHVRKHQAKDEGKFTCPTCEKTFTTAAVMKCHIEVIHEKKPKYVCDICSKSFCGSRNLQVHRRRHASQTCQECGENFENTRILATHLFKQHNISVPSTGKYSCKLCGKRFRKLRLLKDHRNTHTGTRPHTCETCHKTFRTYAARWAHEQRHKNGGFICDFCKHNFTDKNNLRRHISRHLPPEYWRYECDICQKKMQRLSHLQRHLERHEETHPYRCNICGFRFLSKGAMTSHKNQTHNEILSKGVDQITF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -