Csp002387.1
Basic Information
- Insect
- Coelinius sp
- Gene Symbol
- ZFX
- Assembly
- GCA_035578325.1
- Location
- JAOZGT010000001.1:14843986-14848241[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.2 1.3e+02 3.7 0.1 3 23 15 35 14 35 0.94 2 15 9.2 1e+03 1.0 1.9 1 23 866 889 866 889 0.78 3 15 0.009 0.98 10.4 2.1 3 23 974 995 972 995 0.94 4 15 0.0003 0.032 15.1 0.3 2 23 1008 1029 1007 1029 0.97 5 15 1.5e-05 0.0016 19.2 3.1 2 23 1032 1053 1031 1053 0.97 6 15 0.0017 0.18 12.7 0.3 1 23 1059 1081 1059 1081 0.97 7 15 2.4e-05 0.0026 18.5 4.5 2 23 1088 1109 1087 1110 0.95 8 15 0.11 12 7.1 3.7 5 23 1123 1141 1122 1141 0.97 9 15 2.1e-05 0.0023 18.7 1.5 3 23 1148 1169 1147 1169 0.97 10 15 0.012 1.3 10.0 0.5 2 23 1185 1205 1184 1205 0.97 11 15 6.4e-05 0.0071 17.2 0.7 1 20 1211 1230 1211 1233 0.92 12 15 5.5e-05 0.0061 17.4 2.6 1 23 1241 1263 1241 1263 0.99 13 15 0.0022 0.25 12.3 3.2 1 23 1269 1291 1269 1291 0.97 14 15 4.1e-06 0.00044 21.0 3.9 1 23 1297 1319 1297 1319 0.99 15 15 0.00029 0.032 15.1 7.2 1 23 1325 1347 1325 1348 0.96
Sequence Information
- Coding Sequence
- atggaTTTGAATTTAACATCAGACACTGGTGGTGCCCAGGCCTGCCCAGTCTGTACCCTCTATCTGCGCGAGGGTATAAGCCTCCAACGACACTTGGACACCCATCCAAAGGAACAGGTGATAGAGGCACTGATAAAAGCAAGCAGTACCACTCCATCCCccctaccaccaccaccaccaccaccaccactaccACCATCATCAacgtcatcatcatcgtcaccACAACTACCTCAGGGACAATCATCACCATCGACTCAGCCCCAAGTGACAACAAGCCAGTCTCACATATCACCACAATCAGTACAATCAGCACCAACTTATCCAATAGGTCCAGTATTTGAGTATCCACCATTGAATACCATGATGCCACCACAATTTGCCTCATTCAGTTATCAACAATTTGTTAACAATGGAACAATGATGATACCACAGTATTCAAtggcaccaccaccaccaccaccacaagcTAATCAAATGATGCAAATGTTGTATAATCCTTACAGCATGTATCAACAGCAACAGGTACCAACTGTACAAATGTTATCACCAGTAACAACAATACCAACAACAAGAATAAGACCAGTTGTCAATGTTGGTGATAGTAATCAGAGGAGTATTATTATTCCAAGGCATGAGGGTAATCAAGAGGGTAAACAAATATTACCTGaaattaatgatgataatgatgataatgagagaATATTGCCTGATATTGAAACACCAGATACTAATGGAGAACAGGGTAATGATGATAGAGTTGATAGTAGTGAGGATAGAGTTATGGAGGACAGAGGACAACAGACAATTGTTAATCGTAGAATTGAAACTGATGCTGAAATTGATAGAGAGACTGATGTTAATGAGGATGAGGGAGAGAGCATTGTTCCTGAGATTGAGGAGCCCAGGGATGAGCATGTAACTCAACGTTTCAATGATTATCAGAAGGAGAGTGATGGGAGTGAGAGAATTCATCAGGATAATGAGAAAATGGAGagtgataataatttaatccAGAGTGATAAAGATAATTTGGATGATGGAGgtagaaaaaatgatgaagaacaggGAGTAAGGGTGGAAATACCTCAGCATGCTGAGGTTGAACATCTTGAGACATTTTTAATGAACATTGTGGAGacgaatttagagagaaatgattTGTCTGATAAACCAGAGGATCCACAGTCTGGAGAAACccacgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatattacGATTTTAGAGGATTCTGGACACTCTGTTCACAGTGATCGTGATGATAATCCATCAGATGTTAATCATTCTAGTATGGAAGAACCTGTTGTCTCAATCAATATCAAATCTCCACTGCCTTACAGGTACAGAGGGAGTCAGAGTGCTCCAACATCACCAagaattcccaaaaaatcacATCGGTCTTTTACATCAAGATCAGAATACGGATCAAAGGATAATTTAAATATCTATTCAGTGGGTTTTGAAGCTTCAGCACTTCAAGAAGATATTGACgatgatgacgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgaaattgaggataaaaatgttcctgataattttgaagaggAGGACATGGATATTGAGGAGCTTGCAAGTCCTCATACACCTTTTGTCAAGAGAAGTGAGGATATCAAATCTCAGAGTCCTTTGTCAGTTATCAGTGGAGTATCTGGGCTCAGGGTGAAGAATGATTTGAGTAAACCAAGATCACCAGCATCAACGAGATCATTTAGGAGATTGAATGGAGAGAGCGATGAGGAGAATACTGAGGACAATCAGAAAATTCCACTCGATTGTTCACTGGTAGAAGAGACTAATGGTGAACGTgtatttgatgatgatgatgatgatcatcatcatcagtctGTTATTACTGAACATGTTAGTACATTTACTggtgttaataataataatggacaagttgagagaattgaaaaaattgataattattcaatgtcaAGTGATAAAACTCAAGTACCAGATTTAGGAATTGAGGAAATGGATCCAACAACAAGTGCTGAAACCAAGAGTTTTCAGTCAATGGCCAAGTCTATTAATCAAATACCAACAGCTGAATTGCTCAATATCAATGAGGATGCACACTCTGGCCCAATGAATGTATTTGAATTCGATGGACTCCAGATACTTGTGCCGAGTACTTTTATCAGTGAATCAAGCCAAAAGGCTATCAGTGCTACTAGTCAACAGTCAATGGCAAGTAGTGAGGGTGGTGGGGGTATTGATGAGGAAGTTAAGAGTGTTAATATGAGGGCTGATGAGACTATGCCACCTAGAGGAGAGCTGTCTGAGCAGGAGAGCAATGGATGCACTGAACACTCTGCTTGGCAGCTGTACGTAGGTCAGGAATCGTCTCGCATGTCAACATCCTATGACCTCATGGCCCGTGAATCCTGGGAAGAATCTGAGGGTTCAGACAATGAGTCTGGTGTACCTCTCCTCGACAGTCGTTCTCTCGCCACCCACTTCACCTCATCTCTCTTCTTGGACAGAGATCGTAAAACACCAACAAAACAACGTACCTTCAAATGCTCCCTCTGCACTGAAATATTTGACTGTCCAAAAGAACGTAGAGTGCACAGTACAACAGTGCACAAAGAAGCAGGACCTTCAAACAGCAGTAGCAACAGTGGTACCCTGATAAATCCAGAGGCAAAAGATATAAAACTCCTTGATGGCAGAATGAATGTCTTTGAAGAAATATTTGTACCAGGTATTCACGTAACACCAACCTATCATCAATTACCTCAAGCACCTCTATTACATCAATTACAACCACCCCAACAGCCCTCAGATCTCACAAAACCCGATGATAAAACAGATAATCCAACGGGCCTTGATATTTGTTGCGCCATGTGCTCCCAACGTTTCACCTCTGAACGCTCACTCCAAGTACACAATCGTCGTGTACACGGTACAGAAGTAGCTAAACGTCTTCATGATATATCAAAATGTCAAATATGCAACGAAGAATTTTCCTCAGTAGTACAATTTAATGcacatttaaaaattcatccattAGAATGCTCACAGTGTGGTAAATATTTCTacagaaaacaaaattttaaacttCACATGAAACGTCATCTTGGTATTAAACCATTTCCATGTACAGTATGTGATAAAGCATTtttgacaaaacaaaaattggatGAACATATGAATGGACACACTGGTAATGCACCAGTTAAATGTAATTTGTGTAATGAAACATTTAgaagatattcaaatttaacacaacacaaaaatcgtcatcatttgaatataaaaagaaaattaaaggATTATATTTGTCACTGTGGTGAAGTATTtcatactaaaaaaaaattagcatgGCACAAAGAGACACACGATGATAAACCAAAAGCTTGTACATATTGCAATGAGAGATTTATACATATGGCAAGTTTAACAAGACACATGAGAAGGGCACACAACAGACGATTTGTTCCTGATGCAcagagagagaatgaaaatgttGAGTGTCCAATATGTAAGTGTATTTATCTGAGATCATCATTATCTGTACATATGCGTGTACACAATGGTGAAAGACCCTATGAGTGTCAAGTTTGTTCAAAAGCATTCAGTACAAAATGGAATTTACAATTACATAAATGGACACACGCTGCTAGAAGTACTAAACCATACAAGTGTAATCAGTGTAGTGCTGCATTTTATAGACACAGTGATTATACTGCACATATGAATTCACACAGAAATGTTAGACCATATACTTGTAATTATTGTGGTGCACAGTTTATTAGAAAGTATAATTGTTTGAGACATGTTAAGGAACATGAGGAGAATAAACAGTATACGTGTGATGTTTGTAATAAGACATTTCACAGGTCTTATTATCTCAAAGAACATTTGAGGGTACACAGTGGAGCTAGACCTTATACTTGTCATATTTGTGGCAAGAGTAGTAGTACCAAGAGTAATCATAATAAACATGTGAGAATTCATCATGCTAGGGAACCGGTTAATACTGAAAATTGA
- Protein Sequence
- MDLNLTSDTGGAQACPVCTLYLREGISLQRHLDTHPKEQVIEALIKASSTTPSPLPPPPPPPPLPPSSTSSSSSPQLPQGQSSPSTQPQVTTSQSHISPQSVQSAPTYPIGPVFEYPPLNTMMPPQFASFSYQQFVNNGTMMIPQYSMAPPPPPPQANQMMQMLYNPYSMYQQQQVPTVQMLSPVTTIPTTRIRPVVNVGDSNQRSIIIPRHEGNQEGKQILPEINDDNDDNERILPDIETPDTNGEQGNDDRVDSSEDRVMEDRGQQTIVNRRIETDAEIDRETDVNEDEGESIVPEIEEPRDEHVTQRFNDYQKESDGSERIHQDNEKMESDNNLIQSDKDNLDDGGRKNDEEQGVRVEIPQHAEVEHLETFLMNIVETNLERNDLSDKPEDPQSGETHDDDDDDDDDDDDDDDITILEDSGHSVHSDRDDNPSDVNHSSMEEPVVSINIKSPLPYRYRGSQSAPTSPRIPKKSHRSFTSRSEYGSKDNLNIYSVGFEASALQEDIDDDDDDDDDDDDDDDDDDDEIEDKNVPDNFEEEDMDIEELASPHTPFVKRSEDIKSQSPLSVISGVSGLRVKNDLSKPRSPASTRSFRRLNGESDEENTEDNQKIPLDCSLVEETNGERVFDDDDDDHHHQSVITEHVSTFTGVNNNNGQVERIEKIDNYSMSSDKTQVPDLGIEEMDPTTSAETKSFQSMAKSINQIPTAELLNINEDAHSGPMNVFEFDGLQILVPSTFISESSQKAISATSQQSMASSEGGGGIDEEVKSVNMRADETMPPRGELSEQESNGCTEHSAWQLYVGQESSRMSTSYDLMARESWEESEGSDNESGVPLLDSRSLATHFTSSLFLDRDRKTPTKQRTFKCSLCTEIFDCPKERRVHSTTVHKEAGPSNSSSNSGTLINPEAKDIKLLDGRMNVFEEIFVPGIHVTPTYHQLPQAPLLHQLQPPQQPSDLTKPDDKTDNPTGLDICCAMCSQRFTSERSLQVHNRRVHGTEVAKRLHDISKCQICNEEFSSVVQFNAHLKIHPLECSQCGKYFYRKQNFKLHMKRHLGIKPFPCTVCDKAFLTKQKLDEHMNGHTGNAPVKCNLCNETFRRYSNLTQHKNRHHLNIKRKLKDYICHCGEVFHTKKKLAWHKETHDDKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAQRENENVECPICKCIYLRSSLSVHMRVHNGERPYECQVCSKAFSTKWNLQLHKWTHAARSTKPYKCNQCSAAFYRHSDYTAHMNSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKQYTCDVCNKTFHRSYYLKEHLRVHSGARPYTCHICGKSSSTKSNHNKHVRIHHAREPVNTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -